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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955871
Clone id TST39A01NGRL0024_E02
Library
Length 603
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_E02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
ATCGGTGTTGGACGTTCAAGGACCATCATTGGCTTCTGGTATTCCATTCGAGCGCAGGTG
AGATGCTCTCTTTCCTGCAGCACATTGTTAGTGAAGACTTGAAGTTTCTGCATTTGAGAG
GTTTCTGAGGCGCCATACAACAGCCTGCTCTGGCGGAGAAGTCAAGAAAAATTGGGCTCT
ACGAATTAGGGTTAATGTCTTCTAGCAGACATGGAGACTTCTGATTCAAAGCATCCAGGA
ACCCCTACTTCCAGTGTTAGTGGTAATGGGCACTCTTCCAGCTTTAGCATGAATGGGCCT
TCCTCTAGCCCAAGCATGCATGGGGTTTCTTCTAAATTTACCAGCATACGTGGTCCCCTA
GAGCACAGTTTACCTTTTCACCCCTTACCTCTTCACGCCACACATGCGCAAGAGAACTCT
CATTATGGAACCTACTCTGCAATGCAGCCAAATTCACACCACCACCCCAATCCTGCAGCT
ATTGTCAGAGAAAACCTGGCCTATGCGTCAGAGCACGTACGGGTTCTGAAGAAGAGCAAA
AAGGATTTTCAACCATATCACACATTCTTACCCCAGCATAGCTCTCATGAGCGGAATATG
GAA
■■Homology search results ■■ -
sp_hit_id P55316
Definition sp|P55316|FOXG1_HUMAN Forkhead box protein G1 OS=Homo sapiens
Align length 29
Score (bit) 32.3
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955871|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_E02, 5'
         (603 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P55316|FOXG1_HUMAN Forkhead box protein G1 OS=Homo sapiens GN...    32   1.9  
sp|Q1A1A2|FOXG1_EQUBU Forkhead box protein G1 OS=Equus burchelli...    32   1.9  
sp|Q1A1A1|FOXG1_CERSI Forkhead box protein G1 OS=Ceratotherium s...    32   1.9  
sp|Q1A1A5|FOXG1_CERPY Forkhead box protein G1 OS=Cercopithecus p...    32   1.9  
sp|Q1A1A6|FOXG1_CEBCA Forkhead box protein G1 OS=Cebus capucinus...    32   1.9  
sp|Q04892|SOX14_MOUSE Transcription factor SOX-14 OS=Mus musculu...    32   3.3  
sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus...    32   3.3  
sp|Q8MP30|Y7791_DICDI Uncharacterized histidine-rich protein DDB...    31   4.3  
sp|P61259|SOX14_MACFA Transcription factor SOX-14 OS=Macaca fasc...    31   4.3  
sp|O95416|SOX14_HUMAN Transcription factor SOX-14 OS=Homo sapien...    31   4.3  
sp|P22544|BARH1_DROAN Homeobox protein B-H1 OS=Drosophila ananas...    31   5.6  
sp|O74412|YJ0D_SCHPO Uncharacterized protein C1223.13 OS=Schizos...    30   7.3  
sp|Q4JK59|TET2_MOUSE Protein TET2 OS=Mus musculus GN=Tet2 PE=2 SV=2    30   9.4  
sp|P13860|GUX1_PHACH Exoglucanase 1 OS=Phanerochaete chrysospori...    30   9.4  
sp|P75404|DPO3A_MYCPN DNA polymerase III subunit alpha OS=Mycopl...    30   9.4  
sp|O54949|NLK_MOUSE Serine/threonine kinase NLK OS=Mus musculus ...    30   9.5  
sp|Q80YR3|DLN1_MOUSE Protein DLN-1 OS=Mus musculus PE=2 SV=1           30   9.5  

>sp|P55316|FOXG1_HUMAN Forkhead box protein G1 OS=Homo sapiens
           GN=FOXG1 PE=1 SV=2
          Length = 489

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 394 HATHAQENSHYGTYSAMQPNSHHHPNPAA 480
           HA+H   NSH+  +     + HHHP P A
Sbjct: 34  HASHGHHNSHHPQHHHHHHHHHHHPPPPA 62


>sp|Q1A1A2|FOXG1_EQUBU Forkhead box protein G1 OS=Equus burchelli
           GN=FOXG1 PE=3 SV=1
          Length = 488

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 394 HATHAQENSHYGTYSAMQPNSHHHPNPAA 480
           HA+H   NSH+  +     + HHHP P A
Sbjct: 34  HASHGHHNSHHPQHHHHHHHHHHHPPPPA 62


>sp|Q1A1A1|FOXG1_CERSI Forkhead box protein G1 OS=Ceratotherium
           simum GN=FOXG1 PE=3 SV=1
          Length = 486

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 394 HATHAQENSHYGTYSAMQPNSHHHPNPAA 480
           HA+H   NSH+  +     + HHHP P A
Sbjct: 34  HASHGHHNSHHPQHHHHHHHHHHHPPPPA 62


>sp|Q1A1A5|FOXG1_CERPY Forkhead box protein G1 OS=Cercopithecus
           pygerythrus GN=FOXG1 PE=3 SV=1
          Length = 489

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 394 HATHAQENSHYGTYSAMQPNSHHHPNPAA 480
           HA+H   NSH+  +     + HHHP P A
Sbjct: 34  HASHGHHNSHHPQHHHHHHHHHHHPPPPA 62


>sp|Q1A1A6|FOXG1_CEBCA Forkhead box protein G1 OS=Cebus capucinus
           GN=FOXG1 PE=3 SV=1
          Length = 489

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 394 HATHAQENSHYGTYSAMQPNSHHHPNPAA 480
           HA+H   NSH+  +     + HHHP P A
Sbjct: 34  HASHGHHNSHHPQHHHHHHHHHHHPPPPA 62


>sp|Q04892|SOX14_MOUSE Transcription factor SOX-14 OS=Mus musculus
           GN=Sox14 PE=2 SV=2
          Length = 240

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 352 GPLEHSLPFHPLPLHATHAQENSHYGTYSAMQPNSHHHPNP 474
           G + H+L    LP  +T   +N  +G+ S    ++H HP+P
Sbjct: 153 GEVPHTLATSALPYASTLGYQNGAFGSLSCPSQHTHTHPSP 193


>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus
           musculus GN=Rnf111 PE=1 SV=1
          Length = 989

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
 Frame = +1

Query: 382 PLPLHATHAQENSHYGTYSAMQPNSHHHPNPAAIVRENLAYA----SEHVRVLKKSKKDF 549
           P P+HA H+Q +SH  ++    P   H  + AA + ++L  A    S H+     S +  
Sbjct: 681 PHPVHAFHSQISSHAASHPVAPPPPTHLGSTAAPIPQHLPPAHQPISHHIPAPAPSAQRL 740

Query: 550 QPYHTFLPQHSSHERNME 603
            P+           R M+
Sbjct: 741 HPHEVMQRMEVQRRRMMQ 758


>sp|Q8MP30|Y7791_DICDI Uncharacterized histidine-rich protein
           DDB0167791 OS=Dictyostelium discoideum GN=DDB_G0274557
           PE=4 SV=1
          Length = 233

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +1

Query: 355 PLEHSLPF-HPLPLHATHAQENSHYGTYSAMQPNSHHHPNP 474
           P  H  P  HP P    H   + H   +    P+ HHHPNP
Sbjct: 155 PHHHPHPHPHPHPHPHLHPNPHPHPHPHPHPHPHPHHHPNP 195


>sp|P61259|SOX14_MACFA Transcription factor SOX-14 OS=Macaca
           fascicularis GN=SOX14 PE=2 SV=1
          Length = 240

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 352 GPLEHSLPFHPLPLHATHAQENSHYGTYSAMQPNSHHHPNP 474
           G + H+L    LP  +T   +N  +G+ S    ++H HP+P
Sbjct: 153 GEVPHTLATGALPYASTLGYQNGAFGSLSCPSQHTHTHPSP 193


>sp|O95416|SOX14_HUMAN Transcription factor SOX-14 OS=Homo sapiens
           GN=SOX14 PE=2 SV=1
          Length = 240

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 352 GPLEHSLPFHPLPLHATHAQENSHYGTYSAMQPNSHHHPNP 474
           G + H+L    LP  +T   +N  +G+ S    ++H HP+P
Sbjct: 153 GEVPHTLATGALPYASTLGYQNGAFGSLSCPSQHTHTHPSP 193
tr_hit_id A5AWM1
Definition tr|A5AWM1|A5AWM1_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 52
Score (bit) 37.0
E-value 0.89
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955871|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_E02, 5'
         (603 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5AWM1|A5AWM1_VITVI Putative uncharacterized protein OS=Vitis...    37   0.89 
tr|A5B166|A5B166_VITVI Putative uncharacterized protein OS=Vitis...    36   2.0  
tr|A7CC33|A7CC33_BURPI Conserved hypothetical membrane anchored ...    35   4.4  
tr|A5C3S9|A5C3S9_VITVI Putative uncharacterized protein OS=Vitis...    35   4.4  
tr|B5K871|B5K871_9RHOB UDP-N-acetylmuramoylalanyl-D-glutamate-2,...    34   5.8  
tr|A7QL26|A7QL26_VITVI Chromosome undetermined scaffold_116, who...    34   7.6  
tr|A5AEX2|A5AEX2_VITVI Putative uncharacterized protein OS=Vitis...    34   7.6  
tr|B4NIQ9|B4NIQ9_DROWI GK13498 OS=Drosophila willistoni GN=GK134...    34   7.6  
tr|A5BX29|A5BX29_VITVI Putative uncharacterized protein OS=Vitis...    33   9.9  
tr|A5ALN3|A5ALN3_VITVI Putative uncharacterized protein OS=Vitis...    33   9.9  
tr|B4ML51|B4ML51_DROWI GK17368 OS=Drosophila willistoni GN=GK173...    33   9.9  

>tr|A5AWM1|A5AWM1_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_028396 PE=4 SV=1
          Length = 1460

 Score = 37.0 bits (84), Expect = 0.89
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +1

Query: 346  IRGPLEHSLPFHPLP------LHATHAQENSHYGTYSAMQPNSHHHPNPAAI 483
            I  PLEHS+P  P P      +H T   E    G   A +P+S HHP PA I
Sbjct: 1410 IISPLEHSIPIPPEPSQAPPIVHQTMPSEEPTTGEAEAAEPSSPHHP-PATI 1460


>tr|A5B166|A5B166_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_029510 PE=4 SV=1
          Length = 295

 Score = 35.8 bits (81), Expect = 2.0
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = +1

Query: 346 IRGPLEHSLPFHPLPLHA------THAQENSHYGTYSAMQPNSHHHP 468
           I  P+EHS+P  P P HA      T   E    G   A +P+S HHP
Sbjct: 245 IISPVEHSIPIPPEPSHAPPFVHQTMPPEEPTIGEAEAAEPSSSHHP 291


>tr|A7CC33|A7CC33_BURPI Conserved hypothetical membrane anchored
           protein OS=Ralstonia pickettii 12D GN=Rpic12DDRAFT_4313
           PE=4 SV=1
          Length = 862

 Score = 34.7 bits (78), Expect = 4.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 429 NLLCNAAKFTPPPQSCSYCQRKPGLCV 509
           N+     +FTPP   CS+C R PGL V
Sbjct: 3   NIQSTVDRFTPPVHGCSFCDRPPGLAV 29


>tr|A5C3S9|A5C3S9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_038794 PE=4 SV=1
          Length = 436

 Score = 34.7 bits (78), Expect = 4.4
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +1

Query: 346 IRGPLEHSLPFHPLP------LHATHAQENSHYGTYSAMQPNSHHHPNPAAI 483
           I  P EHS+P  P P      +H T + E    G   A +P+S HHP PA I
Sbjct: 386 IISPPEHSIPIPPEPSQAPPFVHQTMSPEEPTTGEAEAAEPSSPHHP-PATI 436


>tr|B5K871|B5K871_9RHOB UDP-N-acetylmuramoylalanyl-D-glutamate-2,
           6-diaminopimelate ligase OS=Octadecabacter antarcticus
           238 GN=murE PE=4 SV=1
          Length = 503

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +1

Query: 355 PLEHSLPFHPLPLHATHAQENSHYGTYSAMQPNSH 459
           PL+H+ P  P+ LH T AQ  SH  T+ AM+ +SH
Sbjct: 156 PLKHTTP-EPITLHRTLAQAKSHGITHVAMEASSH 189


>tr|A7QL26|A7QL26_VITVI Chromosome undetermined scaffold_116, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00001415001 PE=4 SV=1
          Length = 106

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +1

Query: 346 IRGPLEHSLPFHPLP------LHATHAQENSHYGTYSAMQPNSHHHPNPAAI 483
           I  P EHS+P  P P      +H T   E    G   A++P+S HHP PA I
Sbjct: 56  IISPPEHSIPIPPEPSQAPPIVHQTMPFEEPTTGEAEAVEPSSPHHP-PATI 106


>tr|A5AEX2|A5AEX2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_014607 PE=4 SV=1
          Length = 569

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = +1

Query: 346 IRGPLEHSLPFHPLP------LHATHAQENSHYGTYSAMQPNSHHHPNPAAI 483
           I  P EHS+P  P P      +H T   E    G   A +P+S HHP PA I
Sbjct: 519 IISPPEHSIPIPPEPSQAPPFVHQTMPPEEPTTGEAKAAEPSSPHHP-PATI 569


>tr|B4NIQ9|B4NIQ9_DROWI GK13498 OS=Drosophila willistoni GN=GK13498
            PE=4 SV=1
          Length = 2103

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = +1

Query: 355  PLEHSLPFHPLPLHATHAQENSHYGTYSAMQPNSHHHPNPAAIVRENLAY--ASEHVRVL 528
            P +H LP H L LH    Q+  H+         +HHHPN      ENL    +S   +++
Sbjct: 1374 PQQHRLPQHHL-LHHQQQQQQQHHSH------PAHHHPNEFKTPAENLQLQRSSSREQLM 1426

Query: 529  KKSKKDFQPYHTFLPQHSSHERNME 603
               ++   P H  L   SS   +++
Sbjct: 1427 LVEQQQAPPSHIELLPRSSSANSLD 1451


>tr|A5BX29|A5BX29_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_003683 PE=4 SV=1
          Length = 492

 Score = 33.5 bits (75), Expect = 9.9
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +1

Query: 346 IRGPLEHSLPFHPLP------LHATHAQENSHYGTYSAMQPNSHHHPNPAAI 483
           I  P +HS+P  P P      +H T   E    G   A++P+S HHP PA I
Sbjct: 442 IISPPKHSIPIPPKPSQAPPFVHQTMPPEEPTTGEAEAVEPSSPHHP-PATI 492


>tr|A5ALN3|A5ALN3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_006462 PE=4 SV=1
          Length = 482

 Score = 33.5 bits (75), Expect = 9.9
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +1

Query: 346 IRGPLEHSLPFHPLP------LHATHAQENSHYGTYSAMQPNSHHHPNPAAI 483
           I  P +HS+P  P P      +H T + E    G   A +P+S HHP PA I
Sbjct: 432 IISPPKHSIPIPPEPSQAPPIVHQTMSSEEPTTGEAEAAEPSSPHHP-PATI 482