DK955874
Clone id TST39A01NGRL0024_E06
Library
Length 602
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_E06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
CGACCAATTGATTACACAGCTTCAATGGCGAGCTTGCGTCGCATGGCATCTCTAGACTCC
TTATGCATCCCAAGTTCGAATCCCGCTAGTCCTAGCAACAGCCATCTCATCAGGCATTCT
AGCTTGCCGAACATCTTTCTGTGTCAACCGGAGCTCACCATTGGCGCTCTGAAAAGATAC
CCTCCCCTCAAGAAAGCGGTTAACTTCATGAACAAATGCGGAAGAGTCCCTGCCACCTCG
AAGCTAGCACTTGTGTGCAGAGCTCTGTCCAGTAGCCAGTTTATTGATGAGTTTCCCGAC
TTCGAGAGGTTACCTCAAGGTCGGTTTTCCGGACCACCGGGCAATGTGCGCAGGCCAGGC
GCCCCTTTCGCAAGCAACAAGAAGGAAGCCATTGTGACTAAAGGCTTGGATCTTGAGAAG
AGTATTGTTTATTCCGAGCTAAGGGAGTCTGCATGTAGCTGGGAAGTGCCTCCAAGATTT
TTCATGCCTTATCACAATGATACAATGGGGGAGAAAGTGCTTGTGGAAGGAGGTGTGCGC
AGACATACCCATGAGACCGACTCAGATCTTTGCATGCAAAACAGCGGCGGGCAAAAATGA
TT
■■Homology search results ■■ -
sp_hit_id Q93ZH0
Definition sp|Q93ZH0|LYM1_ARATH LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana
Align length 43
Score (bit) 33.1
E-value 1.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955874|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_E06, 5'
(602 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q93ZH0|LYM1_ARATH LysM domain-containing GPI-anchored protein... 33 1.1
sp|P29145|NECB_HYDAT PC3-like endoprotease variant B OS=Hydra at... 30 7.2
sp|B1VKF5|NDHK_CRYJA NAD(P)H-quinone oxidoreductase subunit K, c... 30 7.2

>sp|Q93ZH0|LYM1_ARATH LysM domain-containing GPI-anchored protein 1
OS=Arabidopsis thaliana GN=At1g21880 PE=1 SV=1
Length = 416

Score = 33.1 bits (74), Expect = 1.1
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -1

Query: 359 PGLRTLPGGPENRP*GNLSKSGNSSINWLLDRALHTSASFEVA 231
PG LPG P N P G++S + SS+++ L + ASF +A
Sbjct: 371 PGGGILPGNPANGPAGSISTASASSVSYFFITFLISIASFSLA 413


>sp|P29145|NECB_HYDAT PC3-like endoprotease variant B OS=Hydra
attenuata PE=2 SV=1
Length = 710

Score = 30.4 bits (67), Expect = 7.2
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +1

Query: 412 LEKSIVYSELRESACSWEVP----PRFFMPYHNDTMGEKVLVEGGVRRH 546
LE+ ++ ++ +++ WE P F +PY N KV +EG + H
Sbjct: 628 LEERVIDTQTKQNKAEWEKMRKENPYFDVPYPNGVRKNKVTIEGSTQDH 676


>sp|B1VKF5|NDHK_CRYJA NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic OS=Cryptomeria japonica GN=ndhK PE=3 SV=2
Length = 238

Score = 30.4 bits (67), Expect = 7.2
Identities = 20/74 (27%), Positives = 33/74 (44%)
Frame = +1

Query: 337 PGNVRRPGAPFASNKKEAIVTKGLDLEKSIVYSELRESACSWEVPPRFFMPYHNDTMGEK 516
P ++ PG P K EAI+ + L + I E+ E ++ R+F H G
Sbjct: 131 PVDIYLPGCP---PKPEAIIDAIIKLREKIA-QEISEDRNEFQQGKRYFTRKHRFHFGSS 186

Query: 517 VLVEGGVRRHTHET 558
+L+E R H++
Sbjct: 187 ILIENKEERFFHQS 200


tr_hit_id Q6MPR3
Definition tr|Q6MPR3|Q6MPR3_BDEBA Putative uncharacterized protein OS=Bdellovibrio bacteriovorus
Align length 45
Score (bit) 35.8
E-value 2.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955874|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_E06, 5'
(602 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6MPR3|Q6MPR3_BDEBA Putative uncharacterized protein OS=Bdell... 36 2.0
tr|Q2HAK2|Q2HAK2_CHAGB Putative uncharacterized protein OS=Chaet... 34 7.5
tr|A5DEZ1|A5DEZ1_PICGU Putative uncharacterized protein OS=Pichi... 34 7.5
tr|Q9G0X6|Q9G0X6_ASPNG Cytochrome c oxidase subunit 1 (Fragment)... 33 9.8

>tr|Q6MPR3|Q6MPR3_BDEBA Putative uncharacterized protein
OS=Bdellovibrio bacteriovorus GN=Bd0782 PE=3 SV=1
Length = 254

Score = 35.8 bits (81), Expect = 2.0
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -1

Query: 419 FSRSKPLVTMASFLLLAKGAPGLRTLPGGPENRP*GNLSKSGNSS 285
F R K L +++ LLLA PG+ LP P N P GNS+
Sbjct: 4 FLRIKTLAVLSTTLLLAACGPGIPVLPDDPNNEPAAQQPSDGNSA 48


>tr|Q2HAK2|Q2HAK2_CHAGB Putative uncharacterized protein
OS=Chaetomium globosum GN=CHGG_02752 PE=4 SV=1
Length = 469

Score = 33.9 bits (76), Expect = 7.5
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Frame = +1

Query: 238 SKLALVCRALSSSQFIDE-----FPDFERLPQGRFSGPPG---NVRRPGAPFASNKKEAI 393
SK A+ L+ + F D FP RLP + SGP + R PGAP S A+
Sbjct: 249 SKFAITIPFLAPAGFADASAFTAFPSRTRLPSIKVSGPDTYELSNRGPGAPTPSTLDSAL 308

Query: 394 VTKGLDLEKSIVYSELRESACSWEVPPRFFM 486
KG+ V + R++A PP + +
Sbjct: 309 GNKGITRHNQTVSAVRRQAA----APPIYLL 335


>tr|A5DEZ1|A5DEZ1_PICGU Putative uncharacterized protein OS=Pichia
guilliermondii GN=PGUG_01842 PE=4 SV=2
Length = 872

Score = 33.9 bits (76), Expect = 7.5
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1

Query: 169 LKRYPPLKKAVNFMNKCGRVPATSKLALVCRALSSSQFIDEFPD 300
+K+ L K +NF+ K VP TSK+ A++S+ I +FPD
Sbjct: 346 VKQKVELAKQMNFLAKVETVPTTSKITNDIEAITSTALIRKFPD 389


>tr|Q9G0X6|Q9G0X6_ASPNG Cytochrome c oxidase subunit 1 (Fragment)
OS=Aspergillus niger GN=cox1 PE=3 SV=1
Length = 359

Score = 33.5 bits (75), Expect = 9.8
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = -1

Query: 275 LLDRALHTSASFEVAGTL-PHLFMKLTAFLRGGYLFRAPMVSSG*HRKMFGKLECLMRWL 99
L DR +TS FEVAG P LF L + G + R ++++G + +FG L + +
Sbjct: 95 LTDRNFNTSF-FEVAGGGDPILFQHLYLIIPGFGIIRT-VIAAGFGKNVFGNLGMVYAMM 152

Query: 98 LLGLAGFELGMH 63
+G+ GF +G H
Sbjct: 153 SIGVLGFLVGSH 164