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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955879
Clone id TST39A01NGRL0024_E11
Library
Length 608
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_E11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CACACCCGCACACTCATCCCTCAACACGCACACCGGCTCACACACATTGACCCACAGTGT
AAGCTGCCATGGCTTCCTCTGCCGTGGCTGTGGGCGCTTTCGAGCTAAGAGACATTGATG
AAGCATGTCAACGAAGACAACCCATTGCATGTGCAGCTCCTGCTATGCAGCCATGGAACC
ATAAGCTGAAGAGGGAGACGTTTTTACAGAGAAGCTCTCAACCCACCCTCCGTGAGTCTC
AAAGGAGAGGTTCTTTGAAATGCTGTGCTGCCATTCTCGAGGGGGACTTGAGAACTTCCC
ATCATTACCGCTCGTCGGAGCAGAGAGTCTACGATGTTGTTCTTAAGCAGGCGGCCCTCA
TGGCAAAGAAAGCTGCACAAACACCAGCAGAAACCCCTGTTCTTGTCCCAGGAGGAGAAG
GGGATCTAGGTGGTCTCACTCTGGATTTCACCCTGCAAGTCTCACCGGAGCTTCTAAGAG
AAGCATACACAAGATGTGGTGAAGTGTGTGCGGAATATGCCAAAACCTTTTACCTAGGTA
CAAAGCTGATGACTCCTGAGAGACAGCGAGCCATTTGGGCCATCTATGGTATGGTGCAGG
CGGACTGA
■■Homology search results ■■ -
sp_hit_id Q9SSU8
Definition sp|Q9SSU8|PSY_DAUCA Phytoene synthase, chloroplastic OS=Daucus carota
Align length 93
Score (bit) 77.8
E-value 4.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955879|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_E11, 5'
         (608 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SSU8|PSY_DAUCA Phytoene synthase, chloroplastic OS=Daucus c...    78   4e-14
sp|P49293|PSY_CUCME Phytoene synthase, chloroplastic OS=Cucumis ...    78   4e-14
sp|P53797|PSY_NARPS Phytoene synthase, chloroplastic OS=Narcissu...    77   9e-14
sp|P37273|PSY2_SOLLC Phytoene synthase 2, chloroplastic (Fragmen...    76   2e-13
sp|P37271|PSY_ARATH Phytoene synthase, chloroplastic OS=Arabidop...    75   2e-13
sp|P37272|PSY_CAPAN Phytoene synthase, chloroplastic OS=Capsicum...    74   8e-13
sp|P08196|PSY1_SOLLC Phytoene synthase 1, chloroplastic OS=Solan...    74   8e-13
sp|P49085|PSY_MAIZE Phytoene synthase, chloroplastic OS=Zea mays...    71   4e-12
sp|P37294|CRTB_SYNY3 Phytoene synthase OS=Synechocystis sp. (str...    56   1e-07
sp|P37269|CRTB_SYNE7 Phytoene synthase OS=Synechococcus elongatu...    52   2e-06
sp|O07333|CRTY_SPIPL Phytoene synthase OS=Spirulina platensis GN...    50   7e-06
sp|P54977|CRTB_STRGR Phytoene synthase OS=Streptomyces griseus G...    43   0.001
sp|Q4L976|CRTM_STAHJ Dehydrosqualene synthase OS=Staphylococcus ...    37   0.10 
sp|P29673|APTE_DROME Protein apterous OS=Drosophila melanogaster...    31   4.3  
sp|P38898|YH17_YEAST Putative uncharacterized protein YHR217C OS...    31   5.6  
sp|Q8CII0|ZBTB8_MOUSE Zinc finger and BTB domain-containing prot...    30   7.4  
sp|Q05516|ZBT16_HUMAN Zinc finger and BTB domain-containing prot...    30   9.6  
sp|A7G9V5|Y267_CLOBL UPF0313 protein CLI_0267 OS=Clostridium bot...    30   9.6  
sp|A7FQL2|Y243_CLOB1 UPF0313 protein CLB_0243 OS=Clostridium bot...    30   9.6  
sp|Q7TQM3|FGRL1_RAT Fibroblast growth factor receptor-like 1 OS=...    30   9.6  
sp|Q91V87|FGRL1_MOUSE Fibroblast growth factor receptor-like 1 O...    30   9.6  

>sp|Q9SSU8|PSY_DAUCA Phytoene synthase, chloroplastic OS=Daucus
           carota GN=PSY PE=2 SV=1
          Length = 398

 Score = 77.8 bits (190), Expect = 4e-14
 Identities = 43/93 (46%), Positives = 49/93 (52%)
 Frame = +3

Query: 309 RSSEQRVYDVVXXXXXXXXXXXXXTPAETXXXXXXXXXXXXXXXXXXXXQVSPELLREAY 488
           R+SE+RVY+VV             +                          S  LL EAY
Sbjct: 52  RTSEERVYEVVLKQAALVREEKRSSRGLCLDTKRTGSKSFDKSENDDAGMKSWNLLNEAY 111

Query: 489 TRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 587
            RCGEVCAEYAKTFYLGT LMTPER+RA+WAIY
Sbjct: 112 DRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIY 144


>sp|P49293|PSY_CUCME Phytoene synthase, chloroplastic OS=Cucumis
           melo GN=PSY PE=2 SV=1
          Length = 422

 Score = 77.8 bits (190), Expect = 4e-14
 Identities = 35/39 (89%), Positives = 36/39 (92%)
 Frame = +3

Query: 471 LLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 587
           LL EAY RCGEVCAEYAKTFYLGT LMTPERQ+AIWAIY
Sbjct: 132 LLNEAYDRCGEVCAEYAKTFYLGTMLMTPERQKAIWAIY 170


>sp|P53797|PSY_NARPS Phytoene synthase, chloroplastic OS=Narcissus
           pseudonarcissus GN=PSY PE=2 SV=1
          Length = 423

 Score = 76.6 bits (187), Expect = 9e-14
 Identities = 34/39 (87%), Positives = 37/39 (94%)
 Frame = +3

Query: 471 LLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 587
           LL++AY RCGEVCAEYAKTFYLGT LMTPER+RAIWAIY
Sbjct: 124 LLKDAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIY 162


>sp|P37273|PSY2_SOLLC Phytoene synthase 2, chloroplastic (Fragment)
           OS=Solanum lycopersicum GN=PSY2 PE=2 SV=1
          Length = 310

 Score = 75.9 bits (185), Expect = 2e-13
 Identities = 34/39 (87%), Positives = 36/39 (92%)
 Frame = +3

Query: 471 LLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 587
           LL EAY RCGEVCAEYAKTFYLGT LMTP+R+RAIWAIY
Sbjct: 12  LLSEAYDRCGEVCAEYAKTFYLGTMLMTPDRRRAIWAIY 50


>sp|P37271|PSY_ARATH Phytoene synthase, chloroplastic OS=Arabidopsis
           thaliana GN=PSY1 PE=2 SV=2
          Length = 422

 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 35/42 (83%), Positives = 37/42 (88%)
 Frame = +3

Query: 462 SPELLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 587
           S  LL EAY RCGEVCAEYAKTFYLGT LMTPER++AIWAIY
Sbjct: 124 SLSLLGEAYDRCGEVCAEYAKTFYLGTLLMTPERRKAIWAIY 165


>sp|P37272|PSY_CAPAN Phytoene synthase, chloroplastic OS=Capsicum
           annuum GN=PSY1 PE=2 SV=1
          Length = 419

 Score = 73.6 bits (179), Expect = 8e-13
 Identities = 33/39 (84%), Positives = 35/39 (89%)
 Frame = +3

Query: 471 LLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 587
           LL EAY RC EVCAEYAKTFYLGT LMTPER++AIWAIY
Sbjct: 128 LLSEAYDRCSEVCAEYAKTFYLGTMLMTPERRKAIWAIY 166


>sp|P08196|PSY1_SOLLC Phytoene synthase 1, chloroplastic OS=Solanum
           lycopersicum GN=PSY1 PE=1 SV=2
          Length = 412

 Score = 73.6 bits (179), Expect = 8e-13
 Identities = 34/39 (87%), Positives = 35/39 (89%)
 Frame = +3

Query: 471 LLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 587
           LL EAY RCGEVCAEYAKTF LGT LMTPER+RAIWAIY
Sbjct: 116 LLSEAYDRCGEVCAEYAKTFNLGTMLMTPERRRAIWAIY 154


>sp|P49085|PSY_MAIZE Phytoene synthase, chloroplastic OS=Zea mays
           GN=Y1 PE=3 SV=1
          Length = 410

 Score = 71.2 bits (173), Expect = 4e-12
 Identities = 31/38 (81%), Positives = 34/38 (89%)
 Frame = +3

Query: 474 LREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 587
           L+EAY RCGE+C EYAKTFYLGT LMT ER+RAIWAIY
Sbjct: 115 LKEAYDRCGEICEEYAKTFYLGTMLMTEERRRAIWAIY 152


>sp|P37294|CRTB_SYNY3 Phytoene synthase OS=Synechocystis sp. (strain
           PCC 6803) GN=crtB PE=3 SV=1
          Length = 337

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 25/38 (65%), Positives = 30/38 (78%)
 Frame = +3

Query: 474 LREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 587
           + EAY  C +V A+YAKTFYLGT LM P ++RAIWAIY
Sbjct: 45  VEEAYEICRQVTAQYAKTFYLGTLLMPPAKRRAIWAIY 82


>sp|P37269|CRTB_SYNE7 Phytoene synthase OS=Synechococcus elongatus
           (strain PCC 7942) GN=crtB PE=3 SV=2
          Length = 308

 Score = 52.4 bits (124), Expect = 2e-06
 Identities = 23/38 (60%), Positives = 28/38 (73%)
 Frame = +3

Query: 474 LREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 587
           L EAY  C ++ A YAKTFYLGT LM   +++AIWAIY
Sbjct: 16  LSEAYEECRQITARYAKTFYLGTLLMPEAKRQAIWAIY 53
tr_hit_id A9TUA5
Definition tr|A9TUA5|A9TUA5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 39
Score (bit) 82.8
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955879|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_E11, 5'
         (608 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TUA5|A9TUA5_PHYPA Predicted protein OS=Physcomitrella paten...    83   1e-14
tr|A9TAZ6|A9TAZ6_PHYPA Predicted protein OS=Physcomitrella paten...    83   1e-14
tr|Q078Y5|Q078Y5_NICLS Phytoene synthase OS=Nicotiana langsdorff...    79   2e-13
tr|A5BDN7|A5BDN7_VITVI Putative uncharacterized protein OS=Vitis...    79   2e-13
tr|A9SXT1|A9SXT1_PHYPA Predicted protein OS=Physcomitrella paten...    79   3e-13
tr|B6V1Z8|B6V1Z8_BRARP Chromoplast phytoene synthase OS=Brassica...    78   3e-13
tr|Q9FV44|Q9FV44_TARER Phytoene synthase (Fragment) OS=Tagetes e...    78   5e-13
tr|Q6RSI0|Q6RSI0_MOMCH Phytoene synthase OS=Momordica charantia ...    78   5e-13
tr|Q2VEY1|Q2VEY1_DAUCA Putative phytoene synthase OS=Daucus caro...    78   5e-13
tr|Q1HE89|Q1HE89_CITLA Phytoene synthase (Fragment) OS=Citrullus...    78   5e-13
tr|B8LKL8|B8LKL8_PICSI Putative uncharacterized protein OS=Picea...    77   8e-13
tr|A7PTR9|A7PTR9_VITVI Chromosome undetermined scaffold_30, whol...    77   8e-13
tr|Q2VEY0|Q2VEY0_DAUCA Putative phytoene synthase OS=Daucus caro...    77   1e-12
tr|Q001E4|Q001E4_NARTA Phytoene synthase OS=Narcissus tazetta GN...    77   1e-12
tr|B8LKV0|B8LKV0_PICSI Putative uncharacterized protein OS=Picea...    77   1e-12
tr|B1PBV7|B1PBV7_CITMA Phytoene synthase OS=Citrus maxima PE=2 SV=1    77   1e-12
tr|B1PBV6|B1PBV6_9ROSI Phytoene synthase OS=x Citrofortunella mi...    77   1e-12
tr|A5HNU2|A5HNU2_CAMSI Phytoene synthase (Fragment) OS=Camellia ...    77   1e-12
tr|Q9FEY7|Q9FEY7_HELAN Phytoene synthase OS=Helianthus annuus GN...    76   2e-12
tr|Q9AVV8|Q9AVV8_HELAN Phytoene synthase OS=Helianthus annuus GN...    76   2e-12
tr|Q8L8H7|Q8L8H7_TARER Phytoene synthase OS=Tagetes erecta GN=ps...    76   2e-12
tr|A9Q2P8|A9Q2P8_SOLLC Phytoene synthase 2 OS=Solanum lycopersic...    76   2e-12
tr|Q6RIC0|Q6RIC0_ONCHC Phytoene synthase OS=Oncidium Gower Ramse...    75   2e-12
tr|B2CNE7|B2CNE7_ARATH Phytoene synthase OS=Arabidopsis thaliana...    75   2e-12
tr|A7PJS6|A7PJS6_VITVI Chromosome chr12 scaffold_18, whole genom...    75   3e-12
tr|A5C443|A5C443_VITVI Putative uncharacterized protein OS=Vitis...    75   3e-12
tr|Q6EI12|Q6EI12_MAIZE Putative uncharacterized protein OS=Zea m...    75   4e-12
tr|Q6ED37|Q6ED37_MAIZE Phytoene synthase 2 (Fragment) OS=Zea may...    75   4e-12
tr|Q0PZK5|Q0PZK5_CARPA Phytoene synthase protein OS=Carica papay...    75   4e-12
tr|Q0H903|Q0H903_COFCA Phytoene synthase OS=Coffea canephora GN=...    75   4e-12

>tr|A9TUA5|A9TUA5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_97370 PE=4 SV=1
          Length = 301

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 37/39 (94%), Positives = 38/39 (97%)
 Frame = +3

Query: 471 LLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 587
           +L EAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY
Sbjct: 1   MLEEAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 39


>tr|A9TAZ6|A9TAZ6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_193252 PE=4 SV=1
          Length = 432

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 38/40 (95%), Positives = 38/40 (95%)
 Frame = +3

Query: 468 ELLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 587
           ELL EAY RCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY
Sbjct: 134 ELLDEAYVRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 173


>tr|Q078Y5|Q078Y5_NICLS Phytoene synthase OS=Nicotiana langsdorffii
           x Nicotiana sanderae GN=pys-1 PE=2 SV=1
          Length = 440

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 36/39 (92%), Positives = 37/39 (94%)
 Frame = +3

Query: 471 LLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 587
           LL EAY RCGEVCAEYAKTFYLGTKLMTPER+RAIWAIY
Sbjct: 142 LLSEAYDRCGEVCAEYAKTFYLGTKLMTPERRRAIWAIY 180


>tr|A5BDN7|A5BDN7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007539 PE=4 SV=1
          Length = 187

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 36/40 (90%), Positives = 37/40 (92%)
 Frame = +3

Query: 471 LLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIYG 590
           LL EAY RCGEVCAEYAKTFYLGT LMTPER+RAIWAIYG
Sbjct: 140 LLSEAYDRCGEVCAEYAKTFYLGTMLMTPERRRAIWAIYG 179


>tr|A9SXT1|A9SXT1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_232776 PE=4 SV=1
          Length = 341

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 35/39 (89%), Positives = 37/39 (94%)
 Frame = +3

Query: 471 LLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 587
           +L EAY RCGEVCAEY+KTFYLGTKLMTPERQRAIWAIY
Sbjct: 44  VLDEAYVRCGEVCAEYSKTFYLGTKLMTPERQRAIWAIY 82


>tr|B6V1Z8|B6V1Z8_BRARP Chromoplast phytoene synthase OS=Brassica
           rapa subsp. pekinensis GN=PSY PE=2 SV=2
          Length = 425

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 54/146 (36%), Positives = 66/146 (45%)
 Frame = +3

Query: 150 CAAPAMQPWNHKLKRETFLQRSSQPTLRESQRRGSLKCCAAILEGDLRTSHHYRSSEQRV 329
           C +  M     K   +T+   SS  +L   +R        A   G++  S     SE++V
Sbjct: 37  CQSQRMDNGRRKQTTKTWTSSSSSSSLMSYRRSVVSSSVVASHAGEIALS-----SEEKV 91

Query: 330 YDVVXXXXXXXXXXXXXTPAETXXXXXXXXXXXXXXXXXXXXQVSPELLREAYTRCGEVC 509
           Y+VV             T  E                       S  LL EAY RCGEVC
Sbjct: 92  YNVVLRQAALVNKQLRSTSPELDDVKKPQDIVLPG---------SLSLLGEAYDRCGEVC 142

Query: 510 AEYAKTFYLGTKLMTPERQRAIWAIY 587
           AEYAKTFYLGT LMTPER++AIWAIY
Sbjct: 143 AEYAKTFYLGTLLMTPERRKAIWAIY 168


>tr|Q9FV44|Q9FV44_TARER Phytoene synthase (Fragment) OS=Tagetes
           erecta PE=2 SV=1
          Length = 422

 Score = 77.8 bits (190), Expect = 5e-13
 Identities = 35/39 (89%), Positives = 36/39 (92%)
 Frame = +3

Query: 471 LLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 587
           LL EAY RCGEVCAEYAKTFYLGT LMTPERQ+AIWAIY
Sbjct: 122 LLSEAYNRCGEVCAEYAKTFYLGTMLMTPERQKAIWAIY 160


>tr|Q6RSI0|Q6RSI0_MOMCH Phytoene synthase OS=Momordica charantia
           var. abbreviata GN=PSY PE=2 SV=1
          Length = 412

 Score = 77.8 bits (190), Expect = 5e-13
 Identities = 35/39 (89%), Positives = 36/39 (92%)
 Frame = +3

Query: 471 LLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 587
           LL EAY RCGEVCAEYAKTFYLGT LMTPERQ+AIWAIY
Sbjct: 123 LLNEAYDRCGEVCAEYAKTFYLGTMLMTPERQKAIWAIY 161


>tr|Q2VEY1|Q2VEY1_DAUCA Putative phytoene synthase OS=Daucus carota
           subsp. sativus GN=PSY1 PE=2 SV=1
          Length = 398

 Score = 77.8 bits (190), Expect = 5e-13
 Identities = 43/93 (46%), Positives = 49/93 (52%)
 Frame = +3

Query: 309 RSSEQRVYDVVXXXXXXXXXXXXXTPAETXXXXXXXXXXXXXXXXXXXXQVSPELLREAY 488
           R+SE+RVY+VV             +                          S  LL EAY
Sbjct: 52  RTSEERVYEVVLKQAALVREEKRSSRGLCLDTKRTGSKSFDKSENDDAGMKSWNLLNEAY 111

Query: 489 TRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 587
            RCGEVCAEYAKTFYLGT LMTPER+RA+WAIY
Sbjct: 112 DRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIY 144


>tr|Q1HE89|Q1HE89_CITLA Phytoene synthase (Fragment) OS=Citrullus
           lanatus GN=psy PE=2 SV=1
          Length = 249

 Score = 77.8 bits (190), Expect = 5e-13
 Identities = 35/39 (89%), Positives = 36/39 (92%)
 Frame = +3

Query: 471 LLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIY 587
           LL EAY RCGEVCAEYAKTFYLGT LMTPERQ+AIWAIY
Sbjct: 8   LLNEAYDRCGEVCAEYAKTFYLGTMLMTPERQKAIWAIY 46