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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955883
Clone id TST39A01NGRL0024_E15
Library
Length 472
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_E15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTAAAGGTCTGTGTTGTGGCTATGGCGCAACCCAGCATGGTGCAGAAGTTGAAGCAACTA
GTAGCGACCGAGTTTGGAAACGACGAAAAATTTGCCGCCAACATGAGGCTGCTGAAGGCT
CTTGCAATGTTTGGGGGAGGAATCATTCTCATGCGGAACTATGGTGATCTCATGTCTAAT
TGAACAACTTCATGGTGAACTCTTTCACAGGAATAGATGCCATGTAATTTTGCCCTTGGA
AACATTTGGACTTGAAGTCTTGGTTCAGTTATACCAATGAACATTCCTTTTCTCGTCGTC
GTCGACTGTGGATCTAGCGGATGCGGTAGTATGGATGGTCTACAGAATATTTGTATGACA
CGGTCAAGACTGCGGACCAAGACCAGTATTTGTGTTTTGACTCCTTCCAAGTACAGTAGT
TGGTTTTAATGTAGTTTTTGTGTCTTGCTCCAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9SD80
Definition sp|Q9SD80|TOM5_ARATH Mitochondrial import receptor subunit TOM5 homolog OS=Arabidopsis thaliana
Align length 45
Score (bit) 57.0
E-value 4.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955883|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_E15, 5'
         (451 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SD80|TOM5_ARATH Mitochondrial import receptor subunit TOM5 ...    57   4e-08
sp|Q86UQ4|ABCAD_HUMAN ATP-binding cassette sub-family A member 1...    31   2.8  
sp|P06300|PDYN_RAT Beta-neoendorphin-dynorphin OS=Rattus norvegi...    30   3.6  
sp|P18146|EGR1_HUMAN Early growth response protein 1 OS=Homo sap...    30   4.7  

>sp|Q9SD80|TOM5_ARATH Mitochondrial import receptor subunit TOM5
           homolog OS=Arabidopsis thaliana GN=TOM5 PE=1 SV=3
          Length = 54

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 24/45 (53%), Positives = 37/45 (82%)
 Frame = +1

Query: 40  VQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLM 174
           ++K+K L  +E  +++K+A NM+LL+AL MF GG++LMR+YGDLM
Sbjct: 8   IEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSYGDLM 52


>sp|Q86UQ4|ABCAD_HUMAN ATP-binding cassette sub-family A member 13
            OS=Homo sapiens GN=ABCA13 PE=2 SV=2
          Length = 5058

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
 Frame = +2

Query: 176  LIEQLHGELFHRNRCHVILPLETFGLEVLVQLYQ*TFLFSSSSTVDLADAVVWMV----- 340
            ++ +  G   H N   V L L  FG+ V++  Y  +  FS ++T  L  ++V+M+     
Sbjct: 3634 IVLKTSGIFAHSNTFIVFLFLLDFGMSVVMLSYLLSAFFSQANTAALCTSLVYMISFLPY 3693

Query: 341  YRIFV*HGQDCGPRPVFVF*LLPSTVVGFNVVFVS 445
              + V H Q       F+  LL +T  G  V F++
Sbjct: 3694 IVLLVLHNQLSFVNQTFLC-LLSTTAFGQGVFFIT 3727


>sp|P06300|PDYN_RAT Beta-neoendorphin-dynorphin OS=Rattus norvegicus
           GN=Pdyn PE=1 SV=2
          Length = 248

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 119 AFSSLMLAANFSSFPNSVATSCFNFCTMLGCAIAT 15
           A+S LMLAA     P+ VA  C + C++  CA+ T
Sbjct: 2   AWSRLMLAACLLVIPSEVAADCLSLCSL--CAVRT 34


>sp|P18146|EGR1_HUMAN Early growth response protein 1 OS=Homo
           sapiens GN=EGR1 PE=2 SV=1
          Length = 543

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 140 PPPNIARAFSSLMLA--ANFSSFPNSVATSCFNFCTMLGCAIAT 15
           P P++A  +SS+  A  A  SSFP+S  T+ F+  T L    AT
Sbjct: 491 PSPSVATTYSSVPPAFPAQVSSFPSSAVTNSFSASTGLSDMTAT 534
tr_hit_id Q6IDR6
Definition tr|Q6IDR6|Q6IDR6_ARATH At5g08040 OS=Arabidopsis thaliana
Align length 45
Score (bit) 57.0
E-value 5.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955883|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_E15, 5'
         (451 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6IDR6|Q6IDR6_ARATH At5g08040 OS=Arabidopsis thaliana PE=4 SV=1     57   5e-07
tr|B6SPH3|B6SPH3_MAIZE Putative uncharacterized protein OS=Zea m...    54   4e-06
tr|A9NJT9|A9NJT9_PICSI Putative uncharacterized protein OS=Picea...    54   4e-06
tr|A8HV84|A8HV84_CHLRE Translocase of mitochondrial membrane OS=...    47   5e-04
tr|A7QI05|A7QI05_VITVI Chromosome chr17 scaffold_101, whole geno...    43   0.009
tr|Q2QN85|Q2QN85_ORYSJ cDNA clone:001-021-F10, full insert seque...    42   0.012
tr|A2ZLY7|A2ZLY7_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.012
tr|Q60HI1|Q60HI1_EPTBU Novel ITAM-containing IgSF receptor OS=Ep...    39   0.17 
tr|A9TRT7|A9TRT7_PHYPA Predicted protein (Fragment) OS=Physcomit...    35   1.4  
tr|B6TQS4|B6TQS4_MAIZE Putative uncharacterized protein OS=Zea m...    35   2.5  
tr|Q4Q1S4|Q4Q1S4_LEIMA Putative uncharacterized protein OS=Leish...    34   4.2  
tr|A4IDC1|A4IDC1_LEIIN Putative uncharacterized protein OS=Leish...    34   4.2  
tr|A4HP12|A4HP12_LEIBR Putative uncharacterized protein OS=Leish...    34   4.2  
tr|A8NLJ2|A8NLJ2_COPC7 Predicted protein OS=Coprinopsis cinerea ...    33   7.1  

>tr|Q6IDR6|Q6IDR6_ARATH At5g08040 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 54

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 24/45 (53%), Positives = 37/45 (82%)
 Frame = +1

Query: 40  VQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLM 174
           ++K+K L  +E  +++K+A NM+LL+AL MF GG++LMR+YGDLM
Sbjct: 8   IEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSYGDLM 52


>tr|B6SPH3|B6SPH3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 53

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 26/52 (50%), Positives = 37/52 (71%)
 Frame = +1

Query: 22  MAQPSMVQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLMS 177
           MA  S V+KLK L  ++  ++E++A N +LLKA  +F G I LMRN+GDLM+
Sbjct: 1   MAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMA 52


>tr|A9NJT9|A9NJT9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 54

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 24/47 (51%), Positives = 36/47 (76%)
 Frame = +1

Query: 37  MVQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLMS 177
           +++KLKQ    +  ++EK+AANMRLL+A  +F G I LMRN+G+LM+
Sbjct: 7   VIEKLKQTWNAQVQDEEKWAANMRLLRAAGLFAGSIFLMRNFGELMA 53


>tr|A8HV84|A8HV84_CHLRE Translocase of mitochondrial membrane
           OS=Chlamydomonas reinhardtii GN=TOM5 PE=4 SV=1
          Length = 54

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 18/51 (35%), Positives = 34/51 (66%)
 Frame = +1

Query: 22  MAQPSMVQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLM 174
           MA   ++   ++ +  E+ N+ KF AN+RLL+ +A+FGG + + RN+G+ +
Sbjct: 1   MASNDLLTSAQKWLREEYTNEAKFGANLRLLRGIAIFGGAVFVFRNFGEAL 51


>tr|A7QI05|A7QI05_VITVI Chromosome chr17 scaffold_101, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00000043001
           PE=4 SV=1
          Length = 54

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 18/46 (39%), Positives = 30/46 (65%)
 Frame = +1

Query: 40  VQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLMS 177
           +  +K     +  ++EK+A NM+LL+A  +F G I LMRN+G+ M+
Sbjct: 8   LDNIKAFWNAQIHDEEKWALNMKLLRAAGLFAGSIFLMRNFGEYMA 53


>tr|Q2QN85|Q2QN85_ORYSJ cDNA clone:001-021-F10, full insert sequence
           OS=Oryza sativa subsp. japonica GN=LOC_Os12g38650 PE=4
           SV=1
          Length = 54

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 20/51 (39%), Positives = 34/51 (66%)
 Frame = +1

Query: 25  AQPSMVQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLMS 177
           A  + V+K+K L  ++  ++E +A N +L+KA  +F   I +MRN+GDLM+
Sbjct: 3   AAAAAVEKVKALWDSQVNDEEAWAFNYKLMKAGGLFVASIFVMRNFGDLMA 53


>tr|A2ZLY7|A2ZLY7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38840 PE=4 SV=1
          Length = 54

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 20/51 (39%), Positives = 34/51 (66%)
 Frame = +1

Query: 25  AQPSMVQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLMS 177
           A  + V+K+K L  ++  ++E +A N +L+KA  +F   I +MRN+GDLM+
Sbjct: 3   AAAAAVEKVKALWDSQVNDEEAWAFNYKLMKAGGLFVASIFVMRNFGDLMA 53


>tr|Q60HI1|Q60HI1_EPTBU Novel ITAM-containing IgSF receptor
           OS=Eptatretus burgeri GN=NICIR PE=2 SV=1
          Length = 347

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
 Frame = -3

Query: 404 GVKTQILVLVRSLDRVIQIFCRPSILPHP----LDPQSTTTRKGMFIGITEPRLQVQMFP 237
           GV+ +++ L +S++  I++ C+ +  P P    LDP ST  +  M    TE +LQ+++ P
Sbjct: 167 GVQPKLIFLKQSINGTIELTCKATGFPLPNLDLLDPNSTKLKGMMKNNSTEVQLQIKL-P 225

Query: 236 RAKLHGIYSC--ERVHHE 189
              + G Y+C    +H E
Sbjct: 226 ELAIDGKYTCLGRNIHGE 243


>tr|A9TRT7|A9TRT7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_96308 PE=4 SV=1
          Length = 169

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 293 RKGMFIGITEPRLQVQMFPRAKLHGIYSCER 201
           + GMF  + EPR++    P  K+HG  SCER
Sbjct: 80  KNGMFAQLLEPRVETNRDPENKIHGTMSCER 110


>tr|B6TQS4|B6TQS4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 58

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 46  KLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLMS 177
           KL   + ++  ++  +A N +L KAL +F G I+ MR  GD+++
Sbjct: 14  KLTVFLYSQLYDERNWAKNKKLAKALGVFAGSILFMRTCGDMVA 57