| DK955894 |
| Clone id |
TST39A01NGRL0024_F02 |
| Library |
TST39 |
| Length |
609 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_F02. 5' end sequence. |
| Accession |
DK955894 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
- |
| Sequence |
GGTTTGAGAAATCTGAGTAACCGACGAGCCTGCTGTTAAACCCTAACCTCGCAGCCACGC CATAGCCTGCCTGCTCTTGATGGATTCCAAGAAGGAGAGCGCGGATGCCGCGGCGGCTGC TGCAGATCGCATCAAAGCCGCGACTTTGAATGCTGCAAAGGGGTTGAGCCGTGCTCAGGC CGAGCGAGCTGCGGCTGCTGCTGCCCGCAACGTCAACGCCTATGGCCAGAAGGAGGAAGG CCCTAGCAAATGGCAGGAACGCAAGGAGGCCAAGCGCCAGATGTACCTCATGAGCACAGA GAAGGCTGTCAAGCTCGGCGTACGCAAGGATGACTCCAAACCAGGTACGCTTGCTGGTGG CCTTCAACAATGTCAAAAATGTTTGCAGTCTGGCCATTGGACCTATGAATGTAAGAACGA GAAGGTCTATGTCTCCCGGCCCTCCCGCACCCAACAGCTCAAAAACCCAAAATTGCGCTC CCCCTTCATGGATGCATCGGAGCTTGACCACAGGGTTCTTGATCGCAACGCTCTCCGTGA TCAGGCTGTGCTGAAAGCTAAGACAAAGAAGGGGATGAAAAGCTCCTCGAGAAAGAAGAA GAAAAGCAG |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q5EB97 |
| Definition |
sp|Q5EB97|ZCH10_RAT Zinc finger CCHC domain-containing protein 10 OS=Rattus norvegicus |
| Align length |
32 |
| Score (bit) |
55.8 |
| E-value |
2.0e-07 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9RYR7 |
| Definition |
tr|A9RYR7|A9RYR7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
| Align length |
164 |
| Score (bit) |
181.0 |
| E-value |
4.0e-44 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955894|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_F02, 5' (609 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RYR7|A9RYR7_PHYPA Predicted protein OS=Physcomitrella paten... 181 4e-44 tr|A9NQC6|A9NQC6_PICSI Putative uncharacterized protein OS=Picea... 172 1e-41 tr|A9S4T2|A9S4T2_PHYPA Predicted protein OS=Physcomitrella paten... 162 1e-38 tr|A7Q8N6|A7Q8N6_VITVI Chromosome chr5 scaffold_64, whole genome... 162 1e-38 tr|Q9FGX7|Q9FGX7_ARATH Similarity to unknown protein OS=Arabidop... 160 5e-38 tr|Q6NMK2|Q6NMK2_ARATH At5g49400 (Putative uncharacterized prote... 160 5e-38 tr|B4FLV7|B4FLV7_MAIZE Putative uncharacterized protein OS=Zea m... 159 9e-38 tr|Q53LQ3|Q53LQ3_ORYSJ Os11g0199600 protein OS=Oryza sativa subs... 157 3e-37 tr|B6TKA1|B6TKA1_MAIZE Zinc finger CCHC domain-containing protei... 157 5e-37 tr|A2ZCE7|A2ZCE7_ORYSI Putative uncharacterized protein OS=Oryza... 156 8e-37 tr|B6KHB5|B6KHB5_TOXGO Zinc knuckle domain-containing protein OS... 77 1e-12 tr|A8J585|A8J585_CHLRE Predicted protein OS=Chlamydomonas reinha... 68 4e-10 tr|B0CVM7|B0CVM7_LACBS Predicted protein OS=Laccaria bicolor (st... 60 1e-07 tr|Q0US55|Q0US55_PHANO Putative uncharacterized protein OS=Phaeo... 59 2e-07 tr|A2QQ15|A2QQ15_ASPNC Similarity: the predicted ORF may be N-te... 57 6e-07 tr|A0E2U0|A0E2U0_PARTE Chromosome undetermined scaffold_75, whol... 57 1e-06 tr|Q6TUH7|Q6TUH7_RAT LRRGT00067 OS=Rattus norvegicus GN=Zcchc10 ... 56 2e-06 tr|B0BN45|B0BN45_RAT Zcchc10 protein (Fragment) OS=Rattus norveg... 56 2e-06 tr|B0W692|B0W692_CULQU Putative uncharacterized protein OS=Culex... 55 2e-06 tr|B3SBS2|B3SBS2_TRIAD Putative uncharacterized protein OS=Trich... 55 3e-06 tr|Q9VF05|Q9VF05_DROME CG5516 OS=Drosophila melanogaster GN=CG55... 55 4e-06 tr|A0BKN9|A0BKN9_PARTE Chromosome undetermined scaffold_112, who... 55 4e-06 tr|A8NS02|A8NS02_COPC7 Predicted protein OS=Coprinopsis cinerea ... 55 4e-06 tr|B2W159|B2W159_PYRTR Predicted protein OS=Pyrenophora tritici-... 54 7e-06 tr|Q4R5Z6|Q4R5Z6_MACFA Testis cDNA, clone: QtsA-19674, similar t... 54 9e-06 tr|Q2TBL3|Q2TBL3_BOVIN Zinc finger, CCHC domain containing 10 OS... 54 9e-06 tr|B2KIF3|B2KIF3_RHIFE Zinc finger, CCHC domain containing 10 (P... 54 9e-06 tr|A7E3S6|A7E3S6_BOVIN Zinc finger, CCHC domain containing 10 (F... 54 9e-06 tr|B4DU89|B4DU89_HUMAN cDNA FLJ57436, highly similar to Homo sap... 54 9e-06 tr|B3KVL5|B3KVL5_HUMAN cDNA FLJ16714 fis, clone UTERU2035231, hi... 54 9e-06
>tr|A9RYR7|A9RYR7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_161790 PE=4 SV=1 Length = 352
Score = 181 bits (458), Expect = 4e-44 Identities = 96/164 (58%), Positives = 108/164 (65%), Gaps = 3/164 (1%) Frame = +2
Query: 77 LMDSKKESXXXXXXXXXXXXXXTLNAAKGLSXXXXXXXXXXXXXNVNAYGQKEEGPSKWQ 256 + SKKE L+AAKGLS NVNAYGQKEEGPS+WQ Sbjct: 1 MSSSKKEKADAAAAAADRIKAAALSAAKGLSRTQAERAAAAAARNVNAYGQKEEGPSRWQ 60
Query: 257 ERKEAKRQMYLMSTEKAVKLGVRKDDSKPGT-LAGGLQQCQKCLQSGHWTYECKNEKVYV 433 ERKEAKRQMYLMSTEKAVKLGVRKD G + GG QQCQKC Q GHWTYECKN++VY+ Sbjct: 61 ERKEAKRQMYLMSTEKAVKLGVRKDAKSGGAGVFGGSQQCQKCFQMGHWTYECKNDRVYI 120
Query: 434 SRPSRTQQLKNPKLRSPFMDASE--LDHRVLDRNALRDQAVLKA 559 SRP+RTQQL NPKLR M+ E +D R L R+ LR+ A KA Sbjct: 121 SRPTRTQQLANPKLRPKLMEPEEVLVDPRALQRDVLRETASRKA 164
>tr|A9NQC6|A9NQC6_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 294
Score = 172 bits (436), Expect = 1e-41 Identities = 88/130 (67%), Positives = 95/130 (73%) Frame = +2
Query: 146 LNAAKGLSXXXXXXXXXXXXXNVNAYGQKEEGPSKWQERKEAKRQMYLMSTEKAVKLGVR 325 L AAKGLS NVNAYGQKEEGPS+WQERKEAKRQMYLMSTEKAVKLGVR Sbjct: 21 LGAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQERKEAKRQMYLMSTEKAVKLGVR 80
Query: 326 KDDSKPGTLAGGLQQCQKCLQSGHWTYECKNEKVYVSRPSRTQQLKNPKLRSPFMDASEL 505 KD + G QQCQKC QSGHWTYECKNE+VY+SRPSRTQQLKNPKL+ EL Sbjct: 81 KDLKPTPSSRGSAQQCQKCFQSGHWTYECKNERVYMSRPSRTQQLKNPKLKMRISVPYEL 140
Query: 506 DHRVLDRNAL 535 D+ +NAL Sbjct: 141 DNPDNPQNAL 150
>tr|A9S4T2|A9S4T2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_74590 PE=4 SV=1 Length = 254
Score = 162 bits (411), Expect = 1e-38 Identities = 90/165 (54%), Positives = 103/165 (62%), Gaps = 5/165 (3%) Frame = +2
Query: 80 MDSKKESXXXXXXXXXXXXXXTLNAAKGLSXXXXXXXXXXXXXNVNAYGQKEEGPSKWQE 259 M+ KKE L AKGLS NVN +GQKEEGPS+WQE Sbjct: 1 MNFKKEKSDAATAAADRVKAAALCVAKGLSRTQAERAASAVAPNVNEFGQKEEGPSRWQE 60
Query: 260 RKEAKRQMYLMSTEKAVKLGVRKDDSK--PGTLAGGLQQCQKCLQSGHWTYECKNEKVYV 433 RKEAKRQMYL+STE+AV LGVRKD +K GG Q CQKC Q GHWTYEC+NE+VYV Sbjct: 61 RKEAKRQMYLLSTERAVTLGVRKDPTKLAGAGAVGGSQHCQKCFQMGHWTYECQNERVYV 120
Query: 434 SRPSRTQQLKNPKLRSPFMDASEL---DHRVLDRNALRDQAVLKA 559 SRP+RTQQL NPKLR MD E+ HR L R+ L+ A +KA Sbjct: 121 SRPTRTQQLMNPKLRPELMDPEEILAGLHR-LQRDTLQGAAFMKA 164
>tr|A7Q8N6|A7Q8N6_VITVI Chromosome chr5 scaffold_64, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00033122001 PE=4 SV=1 Length = 261
Score = 162 bits (411), Expect = 1e-38 Identities = 82/139 (58%), Positives = 98/139 (70%), Gaps = 1/139 (0%) Frame = +2
Query: 146 LNAAKGLSXXXXXXXXXXXXXNVNAYGQKEEGPSKWQERKEAKRQMYLMSTEKAVKLGVR 325 L AAKGLS NVNAYGQKEEGPS+WQE++EAKRQMYLMSTEKAV LG R Sbjct: 21 LTAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKREAKRQMYLMSTEKAVILGER 80
Query: 326 KD-DSKPGTLAGGLQQCQKCLQSGHWTYECKNEKVYVSRPSRTQQLKNPKLRSPFMDASE 502 KD + T+ G QCQKC Q+GHWTYECKNE+VY+SRPSRTQQLKNPKLR + + Sbjct: 81 KDLKTTMSTIGGTSSQCQKCFQTGHWTYECKNERVYISRPSRTQQLKNPKLRMKLSISYD 140
Query: 503 LDHRVLDRNALRDQAVLKA 559 LD+ + +N ++ K+ Sbjct: 141 LDNPDIKKNEAAEKVDKKS 159
>tr|Q9FGX7|Q9FGX7_ARATH Similarity to unknown protein OS=Arabidopsis thaliana PE=4 SV=1 Length = 280
Score = 160 bits (405), Expect = 5e-38 Identities = 79/117 (67%), Positives = 88/117 (75%), Gaps = 4/117 (3%) Frame = +2
Query: 143 TLNAAKGLSXXXXXXXXXXXXXNVNAYGQKEEGPSKWQERKEAKRQMYLMSTEKAVKLGV 322 TL AAKGLS NVNAYGQKEEGPS+WQE++E KRQMYLMSTEKAV+LG Sbjct: 25 TLTAAKGLSRTQAERAAAAAARNVNAYGQKEEGPSRWQEKRELKRQMYLMSTEKAVRLGE 84
Query: 323 RKDD----SKPGTLAGGLQQCQKCLQSGHWTYECKNEKVYVSRPSRTQQLKNPKLRS 481 RKD S G+ A QCQKC Q+GHWTYECKNE+VY+SRPSRTQQLKNPKLR+ Sbjct: 85 RKDKTMSASAVGSSASAASQCQKCFQAGHWTYECKNERVYISRPSRTQQLKNPKLRT 141
>tr|Q6NMK2|Q6NMK2_ARATH At5g49400 (Putative uncharacterized protein At5g49400) OS=Arabidopsis thaliana GN=At5g49400 PE=2 SV=1 Length = 275
Score = 160 bits (405), Expect = 5e-38 Identities = 79/117 (67%), Positives = 88/117 (75%), Gaps = 4/117 (3%) Frame = +2
Query: 143 TLNAAKGLSXXXXXXXXXXXXXNVNAYGQKEEGPSKWQERKEAKRQMYLMSTEKAVKLGV 322 TL AAKGLS NVNAYGQKEEGPS+WQE++E KRQMYLMSTEKAV+LG Sbjct: 20 TLTAAKGLSRTQAERAAAAAARNVNAYGQKEEGPSRWQEKRELKRQMYLMSTEKAVRLGE 79
Query: 323 RKDD----SKPGTLAGGLQQCQKCLQSGHWTYECKNEKVYVSRPSRTQQLKNPKLRS 481 RKD S G+ A QCQKC Q+GHWTYECKNE+VY+SRPSRTQQLKNPKLR+ Sbjct: 80 RKDKTMSASAVGSSASAASQCQKCFQAGHWTYECKNERVYISRPSRTQQLKNPKLRT 136
>tr|B4FLV7|B4FLV7_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 267
Score = 159 bits (403), Expect = 9e-38 Identities = 78/138 (56%), Positives = 94/138 (68%) Frame = +2
Query: 143 TLNAAKGLSXXXXXXXXXXXXXNVNAYGQKEEGPSKWQERKEAKRQMYLMSTEKAVKLGV 322 TL+ AKGLS NVNAYGQKEEGPS+WQERKEAKRQMYLMSTEKA KLG Sbjct: 19 TLSVAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQERKEAKRQMYLMSTEKAAKLGT 78
Query: 323 RKDDSKPGTLAGGLQQCQKCLQSGHWTYECKNEKVYVSRPSRTQQLKNPKLRSPFMDASE 502 K + + G QCQKC Q GHWTYECKNE+VY+SRPSRTQQLKNPKL+ + + Sbjct: 79 VKPKASETSSVGAYTQCQKCFQHGHWTYECKNERVYISRPSRTQQLKNPKLKKSVPVSYQ 138
Query: 503 LDHRVLDRNALRDQAVLK 556 ++ + + +Q ++K Sbjct: 139 FENPDIIKEKEEEQKMMK 156
>tr|Q53LQ3|Q53LQ3_ORYSJ Os11g0199600 protein OS=Oryza sativa subsp. japonica GN=Os11g0199600 PE=2 SV=1 Length = 273
Score = 157 bits (398), Expect = 3e-37 Identities = 81/140 (57%), Positives = 99/140 (70%), Gaps = 2/140 (1%) Frame = +2
Query: 146 LNAAKGLSXXXXXXXXXXXXXNVNAYGQKEEGPSKWQERKEAKRQMYLMSTEKAVKLGVR 325 L+AAKGLS NVNAYGQKEEGPS+WQERKEAKRQMYLMSTEKAV LGV+ Sbjct: 20 LSAAKGLSRTQAERAAAAAARNVNAYGQKEEGPSRWQERKEAKRQMYLMSTEKAVILGVK 79
Query: 326 KDDSKPGTLAGG-LQQCQKCLQSGHWTYECKNEKVYVSRPSRTQQLKNPKLRSPFMDAS- 499 ++ + +GG QCQKC Q GHWTYECKNE+VY+SRPSRTQQLKNPKL+ S Sbjct: 80 PKAAQTSSSSGGAYTQCQKCFQPGHWTYECKNERVYISRPSRTQQLKNPKLKKTAAPVSY 139
Query: 500 ELDHRVLDRNALRDQAVLKA 559 + + L++ ++ ++KA Sbjct: 140 QFQNPDLEKEKEEERKLMKA 159
>tr|B6TKA1|B6TKA1_MAIZE Zinc finger CCHC domain-containing protein 10 OS=Zea mays PE=2 SV=1 Length = 271
Score = 157 bits (397), Expect = 5e-37 Identities = 76/112 (67%), Positives = 83/112 (74%) Frame = +2
Query: 143 TLNAAKGLSXXXXXXXXXXXXXNVNAYGQKEEGPSKWQERKEAKRQMYLMSTEKAVKLGV 322 TL+ AKGLS NVNAYGQKEEGPS+WQERKEAKRQMYLMSTEKA KLG Sbjct: 19 TLSVAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQERKEAKRQMYLMSTEKAAKLGT 78
Query: 323 RKDDSKPGTLAGGLQQCQKCLQSGHWTYECKNEKVYVSRPSRTQQLKNPKLR 478 K + + G QCQKC Q GHWTYECKNE+VY+SRPSRTQQLKNPKL+ Sbjct: 79 VKLKASETSSVGAYTQCQKCFQHGHWTYECKNERVYISRPSRTQQLKNPKLK 130
>tr|A2ZCE7|A2ZCE7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_35453 PE=4 SV=1 Length = 272
Score = 156 bits (395), Expect = 8e-37 Identities = 77/112 (68%), Positives = 87/112 (77%), Gaps = 1/112 (0%) Frame = +2
Query: 146 LNAAKGLSXXXXXXXXXXXXXNVNAYGQKEEGPSKWQERKEAKRQMYLMSTEKAVKLGVR 325 L+AAKGLS NVNAYGQKEEGPS+WQERKEAKRQMYLMSTEKAV LGV+ Sbjct: 20 LSAAKGLSRTQAERAAAAAARNVNAYGQKEEGPSRWQERKEAKRQMYLMSTEKAVILGVK 79
Query: 326 KDDSKPGTLAGG-LQQCQKCLQSGHWTYECKNEKVYVSRPSRTQQLKNPKLR 478 ++ + +GG QCQKC Q GHWTYECKNE+VY+SRPSRTQQLKNPKL+ Sbjct: 80 PKAAQTSSSSGGAYTQCQKCFQPGHWTYECKNERVYISRPSRTQQLKNPKLK 131
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