DK955897
Clone id TST39A01NGRL0024_F05
Library
Length 488
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_F05. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CTTTGTACAACAAAGTTGGGTAATTTCATTTCTTGATCTATTGTGTTGGAGTAATAACTG
GCCTCCTTTTTCCACCTCCAAGAATGTTCTGATTTGTTAAAGATCCACTTTTTCAAATTT
CTGCAGGCACACCGAGGGTATCCAGAAATGCACAACAGGCAGCATTTCCTCTGATAGCGA
TGAGGAGAATGCATCAGAAAAATGTACAGCGAGCATCCTGAATCATATTCCAGCTCCTGA
GTTGGCTGGTAGGGTTTCTCGACATCATTTTTCAGAGTGGCTACTGGTTGCCAAGAACGA
GGATGATGAAGAGGAGGATGACGACGAGGATGAGGATGACGATGATGATGAGGAAGGAGA
TGACGATGATGAAGGGGATGATGAAGAAGGTGATGATGATGAAGAAGGTGCAGAAGGCGA
GGGGGAAGAGGGAGAAGGTGATGACGATGAAAGATGAGGCAGATGACGATGAAGATGAAG
AGGATGAT
■■Homology search results ■■ -
sp_hit_id Q6P4T0
Definition sp|Q6P4T0|ATG2A_MOUSE Autophagy-related protein 2 homolog A OS=Mus musculus
Align length 56
Score (bit) 33.1
E-value 0.69
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955897|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_F05, 5'
(488 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6P4T0|ATG2A_MOUSE Autophagy-related protein 2 homolog A OS=M... 33 0.69
sp|Q3B6K8|FABH_PELLD 3-oxoacyl-[acyl-carrier-protein] synthase 3... 31 3.4
sp|Q8CIQ7|DOCK3_MOUSE Dedicator of cytokinesis protein 3 OS=Mus ... 31 3.4
sp|P45128|MFD_HAEIN Transcription-repair-coupling factor OS=Haem... 30 5.8
sp|Q8IZD9|DOCK3_HUMAN Dedicator of cytokinesis protein 3 OS=Homo... 30 7.6

>sp|Q6P4T0|ATG2A_MOUSE Autophagy-related protein 2 homolog A OS=Mus
musculus GN=Atg2a PE=1 SV=2
Length = 1914

Score = 33.1 bits (74), Expect = 0.69
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2

Query: 131 TEGIQKCTTG-SISSDSDEENASEKCTASILNHIPAPELAGRVSRHHFSEWLLVAK 295
+ G + C + + SDSDEE+A AS + PAPE + R S+ FS + V K
Sbjct: 861 SSGFKMCKSAFKLDSDSDEEDAQFFSMASGVPQTPAPEPSRRQSQSTFSTLVTVLK 916


>sp|Q3B6K8|FABH_PELLD 3-oxoacyl-[acyl-carrier-protein] synthase 3
OS=Pelodictyon luteolum (strain DSM 273) GN=fabH PE=3
SV=1
Length = 329

Score = 30.8 bits (68), Expect = 3.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2

Query: 166 NAACCAFLDTLGVPAEI*KSGSLTNQNILGGGKRRPVITPT 44
NAAC FL L ++ K+G+ N ++GG K +I T
Sbjct: 110 NAACSGFLYALNTASQFIKAGTHKNVMVIGGDKMSSIIDYT 150


>sp|Q8CIQ7|DOCK3_MOUSE Dedicator of cytokinesis protein 3 OS=Mus
musculus GN=Dock3 PE=1 SV=1
Length = 2027

Score = 30.8 bits (68), Expect = 3.4
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -1

Query: 143 GYPRC---ACRNLKKWIFNKSEHSWRWKKEASYYSNTIDQEMKLPNF 12
G P C AC+ + +++ SW K EASYY N I+Q+ P F
Sbjct: 1307 GIPLCRELACQY--ESLYDYQSLSWIRKMEASYYDNIIEQQRLEPEF 1351


>sp|P45128|MFD_HAEIN Transcription-repair-coupling factor
OS=Haemophilus influenzae GN=mfd PE=3 SV=1
Length = 1146

Score = 30.0 bits (66), Expect = 5.8
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -3

Query: 183 SSLSEEMLPVVHFWIPSVCLQKFEKVDL*QIRTFLEVEKGGQLLLQHNRSRNE 25
SS+ ++ LPV +P V +Q +K L Q+R F+E KG L R E
Sbjct: 347 SSVRQKNLPVAA--LPEVTIQSQQKEPLGQLRQFIEHFKGNVLFSVETEGRRE 397


>sp|Q8IZD9|DOCK3_HUMAN Dedicator of cytokinesis protein 3 OS=Homo
sapiens GN=DOCK3 PE=1 SV=1
Length = 2030

Score = 29.6 bits (65), Expect = 7.6
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -1

Query: 143 GYPRC---ACRNLKKWIFNKSEHSWRWKKEASYYSNTIDQEMKLPNF 12
G P C AC+ + +++ SW K EASYY N ++Q+ P F
Sbjct: 1310 GIPLCRELACQY--ESLYDYQSLSWIRKMEASYYDNIMEQQRLEPEF 1354


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955897|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_F05, 5'
(488 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******