DK955911 |
Clone id |
TST39A01NGRL0024_F20 |
Library |
TST39 |
Length |
212 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_F20. 5' end sequence. |
Accession |
DK955911 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GCTCATTCCTGTGGTGCGCGATGGCATTCTTTGGTCTGCCCAGCAAAATATGGCGGGGGA TTCTGCGAGCAACAAACGATGGAGATGGTGGATTCCCTCTGCTATGGTGGGCGCTTGCGC TCATCTCATGTCTGGCATCATGGATGCTGGCTTCTCTCCTCATGAATGCTCGACTCGGAA GATCCCCACACTTTCCTCCAGTTGTGCCTGGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8VHS2 |
Definition |
sp|Q8VHS2|CRUM1_MOUSE Crumbs homolog 1 OS=Mus musculus |
Align length |
39 |
Score (bit) |
31.2 |
E-value |
1.7 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A8NK03 |
Definition |
tr|A8NK03|A8NK03_BRUMA Metalloprotease 1, putative OS=Brugia malayi |
Align length |
37 |
Score (bit) |
36.2 |
E-value |
0.86 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955911|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_F20, 5' (212 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A8NK03|A8NK03_BRUMA Metalloprotease 1, putative OS=Brugia mal... 36 0.86 tr|A3P5A7|A3P5A7_BURP0 Amino acid permease OS=Burkholderia pseud... 34 3.3 tr|B5INM6|B5INM6_9CHRO Na+-dependent transporter of the SNF fami... 34 4.3 tr|Q7UF65|Q7UF65_RHOBA Putative uncharacterized protein OS=Rhodo... 33 5.6 tr|Q7U8C2|Q7U8C2_SYNPX Transporter OS=Synechococcus sp. (strain ... 33 5.6 tr|B8BWW4|B8BWW4_THAPS Predicted protein OS=Thalassiosira pseudo... 33 5.6 tr|Q3AI72|Q3AI72_SYNSC Transporter OS=Synechococcus sp. (strain ... 33 9.5 tr|Q2T220|Q2T220_BURTA Dipeptide ABC transporter, permease prote... 33 9.5 tr|A3Z7N6|A3Z7N6_9SYNE Transporter OS=Synechococcus sp. RS9917 G... 33 9.5 tr|B4KD59|B4KD59_DROMO GI24477 OS=Drosophila mojavensis GN=GI244... 33 9.5
>tr|A8NK03|A8NK03_BRUMA Metalloprotease 1, putative OS=Brugia malayi GN=Bm1_04145 PE=4 SV=1 Length = 468
Score = 36.2 bits (82), Expect = 0.86 Identities = 15/37 (40%), Positives = 24/37 (64%) Frame = +1
Query: 25 HSLVCPAKYGGGFCEQQTMEMVDSLCYGGRLRSSHVW 135 +S +CP+ YGG +CE++ DS +GG LR++ W Sbjct: 330 YSCLCPSGYGGRYCERR----ADSFGWGGNLRATSEW 362
>tr|A3P5A7|A3P5A7_BURP0 Amino acid permease OS=Burkholderia pseudomallei (strain 1106a) GN=BURPS1106A_A1483 PE=4 SV=1 Length = 173
Score = 34.3 bits (77), Expect = 3.3 Identities = 21/55 (38%), Positives = 28/55 (50%) Frame = -2
Query: 187 GDLPSRAFMRREASIHDARHEMSASAHHSRGNPPSPSFVARRIPRHILLGRPKNA 23 G P+RA RR ++H R SA A RG P +P FV R + R +P +A Sbjct: 79 GSRPARARSRRAGTLHLRRAAASAPAR--RGRPATPRFVTRFVARFSTRKQPLSA 131
>tr|B5INM6|B5INM6_9CHRO Na+-dependent transporter of the SNF family protein OS=Cyanobium sp. PCC 7001 GN=CPCC7001_2420 PE=4 SV=1 Length = 456
Score = 33.9 bits (76), Expect = 4.3 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = +3
Query: 48 IWRGILRATNDGDGGFPLLWWALALISCLASWMLASLLMNARLGRSPHFPPVVPG 212 +W RA+ G G F LL+ + L+ CL ++A +++ G +P P+ G Sbjct: 40 LWGFAYRASQGGGGAFVLLYLLIVLVVCLPV-LVAEMVLGRSTGHAPLLAPITAG 93
>tr|Q7UF65|Q7UF65_RHOBA Putative uncharacterized protein OS=Rhodopirellula baltica GN=RB10314 PE=4 SV=1 Length = 1073
Score = 33.5 bits (75), Expect = 5.6 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +2
Query: 89 WIPSAMVGACAHLMSGIMDAGFSPHECSTRKIPTLSSSCAW 211 W+ A++ + + +D F PH + R+IPT+ SS W Sbjct: 997 WVQLAILDPSTYTIQRYIDGHFEPHVVTDREIPTVQSSMHW 1037
>tr|Q7U8C2|Q7U8C2_SYNPX Transporter OS=Synechococcus sp. (strain WH8102) GN=SYNW0699 PE=3 SV=1 Length = 439
Score = 33.5 bits (75), Expect = 5.6 Identities = 18/55 (32%), Positives = 28/55 (50%) Frame = +3
Query: 48 IWRGILRATNDGDGGFPLLWWALALISCLASWMLASLLMNARLGRSPHFPPVVPG 212 +W RA+ G G F LL+ + L+ CL ++A +++ G SP PV G Sbjct: 26 LWGFAYRASQGGGGAFLLLYLLIVLVVCLPV-LVAEMVLGRSTGSSPLLAPVNAG 79
>tr|B8BWW4|B8BWW4_THAPS Predicted protein OS=Thalassiosira pseudonana CCMP1335 GN=THAPSDRAFT_21607 PE=4 SV=1 Length = 768
Score = 33.5 bits (75), Expect = 5.6 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = -2
Query: 172 RAFMRREASIHDARHEMSASAHHSRGNPPSPSFVARRIPRHILLGRPKNAIAHH 11 R R I ARH+ S+SAHH PPS + + L+ RPK H Sbjct: 94 RGRRRTSVEIESARHQQSSSAHHHHSPPPS----QQPSQQQQLVSRPKQRRPRH 143
>tr|Q3AI72|Q3AI72_SYNSC Transporter OS=Synechococcus sp. (strain CC9605) GN=Syncc9605_1969 PE=3 SV=1 Length = 439
Score = 32.7 bits (73), Expect = 9.5 Identities = 17/52 (32%), Positives = 28/52 (53%) Frame = +3
Query: 48 IWRGILRATNDGDGGFPLLWWALALISCLASWMLASLLMNARLGRSPHFPPV 203 +W RA+ G G F LL+ + L+ CL ++A +++ G+SP PV Sbjct: 26 LWGFAYRASQGGGGAFLLLYVLIVLLVCLPV-LVAEMVLGRSTGQSPLLAPV 76
>tr|Q2T220|Q2T220_BURTA Dipeptide ABC transporter, permease protein OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=BTH_I0221 PE=3 SV=1 Length = 336
Score = 32.7 bits (73), Expect = 9.5 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 12/56 (21%) Frame = +3
Query: 15 CAMAF---FGLPSKIWRGILRATNDGDG---------GFPLLWWALALISCLASWM 146 CA+AF FGLP+ ++ + R T G P+ WW L LI +S++ Sbjct: 105 CALAFALAFGLPAGVFAALRRGTIVDHGVMGTALTGYSMPIFWWGLILIMVFSSYL 160
>tr|A3Z7N6|A3Z7N6_9SYNE Transporter OS=Synechococcus sp. RS9917 GN=RS9917_01462 PE=3 SV=1 Length = 446
Score = 32.7 bits (73), Expect = 9.5 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +3
Query: 48 IWRGILRATNDGDGGFPLLWWALALISCLASWMLASLLMNARLGRSPHFPPV 203 +W RA+ G G F LL+ + L+ CL ++A +++ G SP PV Sbjct: 27 LWGFAYRASQGGGGAFLLLYVLIVLVVCLPV-LVAEMVLGRSTGHSPLLAPV 77
>tr|B4KD59|B4KD59_DROMO GI24477 OS=Drosophila mojavensis GN=GI24477 PE=4 SV=1 Length = 861
Score = 32.7 bits (73), Expect = 9.5 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = +1
Query: 19 RWHSLVCPAKYGGGFCEQQTMEMVDSLCYGGRLR--SSH 129 R + VCP + G CE++ + D C+ GR R SSH Sbjct: 355 RGYKCVCPKGWNGRMCEEKLLTCADKPCHQGRCRNTSSH 393
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