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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955929
Clone id TST39A01NGRL0024_G14
Library
Length 558
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_G14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CAAAAATTTGCAACGAAGAGCGAGATCGCTCTTCATTTCCCTCTCTCCTCTGTGTGAGTG
TGTGTGTGTGATGTGAGAATTCATAACCCCCCGCCCCCGCCGCCCCCCCTCCCCTCCATT
CGGCGCGTATGCGTGCATGCGTGAGCAGGCACAATAATATCAAAGGAGGCTTTACTCAGG
CACGATGCTTCAGCCAGTGCCCGTGCCTCCATCTGCAAGTCACCCACCTGATTCCAAGGG
TGTTGTGCCCCTAAGCACTTGGGTTCTCATTTCCAATTTCAAGCTCTCCTATAATCTGTT
GAGGAGACCAGATGGAACATTCAACAGGCACTTAGCAGAGTTTTTGGACAGGAAAGTCAC
TTCAAACAGAGTACCTGTGGATGGAGTAGTTTCAATGGATGTGTTGATTGAGCGCACAAC
GGGGGTTTGGGGTCGGGTGTTTTGGGAATGTGAGCAGGATATGTATGACAGAGCTTTTTC
GATCAGATCCCTTGCAAAATCCGGATGTAGAGCCCATGGTTGAACGGCGAGATGTACTGC
AACCCAAGCCGCTTGTTA
■■Homology search results ■■ -
sp_hit_id Q940G6
Definition sp|Q940G6|GI1L3_ARATH Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana
Align length 71
Score (bit) 108.0
E-value 1.0e-23
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955929|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_G14, 5'
         (558 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q940G6|GI1L3_ARATH Probable gibberellin receptor GID1L3 OS=Ar...   108   1e-23
sp|Q9MAA7|GI1L1_ARATH Probable gibberellin receptor GID1L1 OS=Ar...   107   4e-23
sp|Q9LYC1|GI1L2_ARATH Probable gibberellin receptor GID1L2 OS=Ar...    90   7e-18
sp|Q6L545|GID1_ORYSJ Gibberellin receptor GID1 OS=Oryza sativa s...    88   3e-17
sp|Q49X02|RSGA_STAS1 Putative ribosome biogenesis GTPase rsgA OS...    32   2.1  
sp|Q1WT45|UVRC_LACS1 UvrABC system protein C OS=Lactobacillus sa...    31   4.7  

>sp|Q940G6|GI1L3_ARATH Probable gibberellin receptor GID1L3
           OS=Arabidopsis thaliana GN=GID1L3 PE=2 SV=1
          Length = 344

 Score =  108 bits (271), Expect = 1e-23
 Identities = 52/71 (73%), Positives = 61/71 (85%)
 Frame = +2

Query: 230 DSKGVVPLSTWVLISNFKLSYNLLRRPDGTFNRHLAEFLDRKVTSNRVPVDGVVSMDVLI 409
           +SK VVPL+TWVLISNFKL+YNLLRRPDGTFNRHLAEFLDRKV +N  PV+GV S DV+I
Sbjct: 11  ESKTVVPLNTWVLISNFKLAYNLLRRPDGTFNRHLAEFLDRKVPANANPVNGVFSFDVII 70

Query: 410 ERTTGVWGRVF 442
           +R T +  RV+
Sbjct: 71  DRQTNLLSRVY 81


>sp|Q9MAA7|GI1L1_ARATH Probable gibberellin receptor GID1L1
           OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1
          Length = 345

 Score =  107 bits (267), Expect = 4e-23
 Identities = 50/71 (70%), Positives = 61/71 (85%)
 Frame = +2

Query: 230 DSKGVVPLSTWVLISNFKLSYNLLRRPDGTFNRHLAEFLDRKVTSNRVPVDGVVSMDVLI 409
           +S+ VVPL+TWVLISNFK++YN+LRRPDGTFNRHLAE+LDRKVT+N  PVDGV S DVLI
Sbjct: 11  ESRTVVPLNTWVLISNFKVAYNILRRPDGTFNRHLAEYLDRKVTANANPVDGVFSFDVLI 70

Query: 410 ERTTGVWGRVF 442
           +R   +  RV+
Sbjct: 71  DRRINLLSRVY 81


>sp|Q9LYC1|GI1L2_ARATH Probable gibberellin receptor GID1L2
           OS=Arabidopsis thaliana GN=GID1L2 PE=2 SV=1
          Length = 358

 Score = 90.1 bits (222), Expect = 7e-18
 Identities = 43/71 (60%), Positives = 56/71 (78%)
 Frame = +2

Query: 230 DSKGVVPLSTWVLISNFKLSYNLLRRPDGTFNRHLAEFLDRKVTSNRVPVDGVVSMDVLI 409
           + K +VPL+TWVLISNFKL+Y +LRRPDG+FNR LAEFLDRKV +N  P+DGV S D  +
Sbjct: 11  ECKRIVPLNTWVLISNFKLAYKVLRRPDGSFNRDLAEFLDRKVPANSFPLDGVFSFD-HV 69

Query: 410 ERTTGVWGRVF 442
           + TT +  R++
Sbjct: 70  DSTTNLLTRIY 80


>sp|Q6L545|GID1_ORYSJ Gibberellin receptor GID1 OS=Oryza sativa
           subsp. japonica GN=GID1 PE=1 SV=1
          Length = 354

 Score = 87.8 bits (216), Expect = 3e-17
 Identities = 41/71 (57%), Positives = 55/71 (77%)
 Frame = +2

Query: 230 DSKGVVPLSTWVLISNFKLSYNLLRRPDGTFNRHLAEFLDRKVTSNRVPVDGVVSMDVLI 409
           + K VVPL TWVLISNFKLSYN+LRR DGTF R L E+LDR+V +N  P++GV S D +I
Sbjct: 11  ECKTVVPLHTWVLISNFKLSYNILRRADGTFERDLGEYLDRRVPANARPLEGVSSFDHII 70

Query: 410 ERTTGVWGRVF 442
           +++ G+  R++
Sbjct: 71  DQSVGLEVRIY 81


>sp|Q49X02|RSGA_STAS1 Putative ribosome biogenesis GTPase rsgA
           OS=Staphylococcus saprophyticus subsp. saprophyticus
           (strain ATCC 15305 / DSM 20229) GN=rsgA PE=3 SV=1
          Length = 291

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -1

Query: 534 HLAVQPWALHPDFARDLIEKALSYISCSHSQNTRPQTPVVRSINTSIETTPSTGTLFEV 358
           HL +   A+ PDF+  L+++   ++  +HS + RP+  V +   TS+E       L EV
Sbjct: 76  HLIIVMSAVEPDFSTQLLDR---FLVIAHSYHMRPRILVTKKDLTSLEKQHDIEKLLEV 131


>sp|Q1WT45|UVRC_LACS1 UvrABC system protein C OS=Lactobacillus
           salivarius subsp. salivarius (strain UCC118) GN=uvrC
           PE=3 SV=1
          Length = 590

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 495 ARDLIEKALSYISCSHSQNTRPQTPVVRSINTSIETTPSTGTLFEVTFLSKN 340
           A++L  +  SY   SH   T      +R+  T I +T     L E+T + K+
Sbjct: 35  AKNLKNRVRSYFKSSHEGKTAKLVSEIRNFETIITSTDKEAFLLEITLIQKH 86
tr_hit_id A5BRG2
Definition tr|A5BRG2|A5BRG2_VITVI Putative uncharacterized protein (Chromosome chr14 scaffold_164, whole genome shotgun sequence) OS=Vitis vinifera
Align length 71
Score (bit) 109.0
E-value 1.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955929|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_G14, 5'
         (558 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BRG2|A5BRG2_VITVI Putative uncharacterized protein (Chromos...   109   1e-22
tr|B0S4S3|B0S4S3_MEDTR Putative GID1-like gibberellin receptor O...   104   3e-21
tr|A9P286|A9P286_PICSI Putative uncharacterized protein OS=Picea...   104   3e-21
tr|B0S4T0|B0S4T0_9MAGN Putative GID1-like gibberellin receptor O...   104   4e-21
tr|B0S4S2|B0S4S2_PINTA Putative GID1-like gibberellin receptor O...   103   8e-21
tr|B0S4S1|B0S4S1_PICGL Putative GID1-like gibberellin receptor O...   101   3e-20
tr|Q0ZPU9|Q0ZPU9_ACTDE CXE carboxylesterase OS=Actinidia delicio...   100   4e-20
tr|A7PU21|A7PU21_VITVI Chromosome chr7 scaffold_31, whole genome...   100   7e-20
tr|B0S4S4|B0S4S4_MEDTR Putative GID1-like gibberellin receptor O...   100   9e-20
tr|A7U4T3|A7U4T3_9TRAC Putative gibberellin receptor OS=Selagine...    99   1e-19
tr|B0S4S9|B0S4S9_SOLLC Putative GID1-like gibberellin receptor O...    98   3e-19
tr|A5Z1M8|A5Z1M8_GOSHI Gibberellic acid receptor-b OS=Gossypium ...    95   3e-18
tr|Q0PIN1|Q0PIN1_GOSHI Gibberellic acid receptor OS=Gossypium hi...    94   6e-18
tr|A9LY07|A9LY07_9TRAC Putative gibberellin receptor OS=Selagine...    91   3e-17
tr|A7MAQ4|A7MAQ4_HORVU GID1-like gibberellin receptor OS=Hordeum...    90   7e-17
tr|A9LY08|A9LY08_9TRAC Putative gibberellin receptor OS=Selagine...    89   1e-16
tr|B0S4T3|B0S4T3_WHEAT Putative GID1-like gibberellin receptor O...    89   2e-16
tr|B8QAJ2|B8QAJ2_WHEAT Putative GA receptor GID1 (Fragment) OS=T...    88   3e-16
tr|Q0DI89|Q0DI89_ORYSJ Os05g0407500 protein OS=Oryza sativa subs...    88   4e-16
tr|B8AY84|B8AY84_ORYSI Putative uncharacterized protein OS=Oryza...    88   4e-16
tr|A5BUP8|A5BUP8_VITVI Putative uncharacterized protein OS=Vitis...    88   4e-16
tr|B0S4T1|B0S4T1_ALLCE Putative GID1-like gibberellin receptor (...    87   6e-16
tr|B0S4S7|B0S4S7_MAIZE Putative GID1-like gibberellin receptor O...    85   3e-15
tr|B0S4S8|B0S4S8_SORBI Putative GID1-like gibberellin receptor O...    84   4e-15
tr|B0S4S5|B0S4S5_SACOF Putative GID1-like gibberellin receptor O...    84   4e-15
tr|B0S4S6|B0S4S6_MAIZE Putative GID1-like gibberellin receptor O...    84   5e-15
tr|A9RSF8|A9RSF8_PHYPA GLP1 GID1-like protein OS=Physcomitrella ...    58   3e-07
tr|A9LY13|A9LY13_PHYPA Gibberellin receptor GID1-like protein OS...    58   3e-07
tr|A9NNN3|A9NNN3_PICSI Putative uncharacterized protein OS=Picea...    56   1e-06
tr|B4FJG3|B4FJG3_MAIZE Putative uncharacterized protein OS=Zea m...    55   3e-06

>tr|A5BRG2|A5BRG2_VITVI Putative uncharacterized protein (Chromosome
           chr14 scaffold_164, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00006107001 PE=4 SV=1
          Length = 344

 Score =  109 bits (272), Expect = 1e-22
 Identities = 50/71 (70%), Positives = 62/71 (87%)
 Frame = +2

Query: 230 DSKGVVPLSTWVLISNFKLSYNLLRRPDGTFNRHLAEFLDRKVTSNRVPVDGVVSMDVLI 409
           +SK VVPL+TW+LISNFKL+YNLLRRPDGTFNRHLAEFLDRKV +N  PV+GV S DV+I
Sbjct: 11  ESKRVVPLNTWILISNFKLAYNLLRRPDGTFNRHLAEFLDRKVPANANPVEGVFSFDVII 70

Query: 410 ERTTGVWGRVF 442
           +R+T +  R++
Sbjct: 71  DRSTSLLSRIY 81


>tr|B0S4S3|B0S4S3_MEDTR Putative GID1-like gibberellin receptor
           OS=Medicago truncatula GN=GID1a PE=2 SV=1
          Length = 345

 Score =  104 bits (260), Expect = 3e-21
 Identities = 50/71 (70%), Positives = 59/71 (83%)
 Frame = +2

Query: 230 DSKGVVPLSTWVLISNFKLSYNLLRRPDGTFNRHLAEFLDRKVTSNRVPVDGVVSMDVLI 409
           DSK VVPL+ WVLISNFKL+YNLLRRPDGTFNR LAEFLDRKV +N  PVDGV S DV++
Sbjct: 11  DSKMVVPLNMWVLISNFKLAYNLLRRPDGTFNRDLAEFLDRKVPANANPVDGVFSFDVIV 70

Query: 410 ERTTGVWGRVF 442
           +R T +  R++
Sbjct: 71  DRETNLLTRIY 81


>tr|A9P286|A9P286_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 352

 Score =  104 bits (260), Expect = 3e-21
 Identities = 47/71 (66%), Positives = 61/71 (85%)
 Frame = +2

Query: 230 DSKGVVPLSTWVLISNFKLSYNLLRRPDGTFNRHLAEFLDRKVTSNRVPVDGVVSMDVLI 409
           ++K VVPL+T+VLISNFKL YNLLRRPDGTFNRHLAEFL+RK  +N  PV GV S+DV++
Sbjct: 11  EAKMVVPLNTFVLISNFKLVYNLLRRPDGTFNRHLAEFLERKAPANATPVSGVFSLDVVM 70

Query: 410 ERTTGVWGRVF 442
           +R +G+W R++
Sbjct: 71  DRDSGLWSRIY 81


>tr|B0S4T0|B0S4T0_9MAGN Putative GID1-like gibberellin receptor
           OS=Aquilegia formosa x Aquilegia pubescens GN=GID1 PE=2
           SV=1
          Length = 343

 Score =  104 bits (259), Expect = 4e-21
 Identities = 49/71 (69%), Positives = 60/71 (84%)
 Frame = +2

Query: 230 DSKGVVPLSTWVLISNFKLSYNLLRRPDGTFNRHLAEFLDRKVTSNRVPVDGVVSMDVLI 409
           +SK  VPL+TWVLISNFKL+Y +LRRPDGTFNR+LAEFLDRKV +N  PVDGV S DV+I
Sbjct: 11  ESKMAVPLNTWVLISNFKLAYTMLRRPDGTFNRNLAEFLDRKVPANANPVDGVFSFDVII 70

Query: 410 ERTTGVWGRVF 442
           +R TG+  R++
Sbjct: 71  DRATGLLCRIY 81


>tr|B0S4S2|B0S4S2_PINTA Putative GID1-like gibberellin receptor
           OS=Pinus taeda GN=GID1 PE=2 SV=1
          Length = 357

 Score =  103 bits (256), Expect = 8e-21
 Identities = 47/71 (66%), Positives = 60/71 (84%)
 Frame = +2

Query: 230 DSKGVVPLSTWVLISNFKLSYNLLRRPDGTFNRHLAEFLDRKVTSNRVPVDGVVSMDVLI 409
           ++K VVPL+T+VLISNFKL YNLLRRPDGTFNRHLAEFLDRK  +N   V GV S+DV++
Sbjct: 11  EAKMVVPLNTFVLISNFKLVYNLLRRPDGTFNRHLAEFLDRKAPANATAVSGVFSLDVVM 70

Query: 410 ERTTGVWGRVF 442
           +R +G+W R++
Sbjct: 71  DRDSGLWSRIY 81


>tr|B0S4S1|B0S4S1_PICGL Putative GID1-like gibberellin receptor
           OS=Picea glauca GN=GID1 PE=2 SV=1
          Length = 352

 Score =  101 bits (251), Expect = 3e-20
 Identities = 46/71 (64%), Positives = 60/71 (84%)
 Frame = +2

Query: 230 DSKGVVPLSTWVLISNFKLSYNLLRRPDGTFNRHLAEFLDRKVTSNRVPVDGVVSMDVLI 409
           ++K VVPL+T+VLISNFKL YNLLRRPDGTFNRHLAEFL+RK  +N  PV  V S+DV++
Sbjct: 11  EAKMVVPLNTFVLISNFKLVYNLLRRPDGTFNRHLAEFLERKAPANATPVSVVFSLDVVM 70

Query: 410 ERTTGVWGRVF 442
           +R +G+W R++
Sbjct: 71  DRDSGLWSRIY 81


>tr|Q0ZPU9|Q0ZPU9_ACTDE CXE carboxylesterase OS=Actinidia deliciosa
           GN=CXE9 PE=2 SV=1
          Length = 346

 Score =  100 bits (250), Expect = 4e-20
 Identities = 50/90 (55%), Positives = 65/90 (72%)
 Frame = +2

Query: 230 DSKGVVPLSTWVLISNFKLSYNLLRRPDGTFNRHLAEFLDRKVTSNRVPVDGVVSMDVLI 409
           +SK VVPL+TW+LISNFKL+YN+LRRPDGTFNR LAEFL+RKV  N +PVDGV S DV +
Sbjct: 11  ESKKVVPLNTWILISNFKLAYNMLRRPDGTFNRDLAEFLERKVPPNAIPVDGVFSFDV-V 69

Query: 410 ERTTGVWGRVFWECEQDMYDRAFSIRSLAK 499
           + +T +  R++    +   +  F I  L K
Sbjct: 70  DSSTSLLNRIYRPSPETEANSQFGIDDLQK 99


>tr|A7PU21|A7PU21_VITVI Chromosome chr7 scaffold_31, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023625001
           PE=4 SV=1
          Length = 344

 Score =  100 bits (248), Expect = 7e-20
 Identities = 47/71 (66%), Positives = 59/71 (83%)
 Frame = +2

Query: 230 DSKGVVPLSTWVLISNFKLSYNLLRRPDGTFNRHLAEFLDRKVTSNRVPVDGVVSMDVLI 409
           +SK VVPL+TW+LISNFKL+YNLLRRPDGTF R LAEFL+RK  +N  PVDGV S D+ +
Sbjct: 11  ESKRVVPLNTWILISNFKLAYNLLRRPDGTFERELAEFLERKAPANSFPVDGVFSFDI-V 69

Query: 410 ERTTGVWGRVF 442
           ++TTG+  RV+
Sbjct: 70  DKTTGLLNRVY 80


>tr|B0S4S4|B0S4S4_MEDTR Putative GID1-like gibberellin receptor
           OS=Medicago truncatula GN=GID1b PE=2 SV=1
          Length = 350

 Score = 99.8 bits (247), Expect = 9e-20
 Identities = 50/71 (70%), Positives = 60/71 (84%)
 Frame = +2

Query: 230 DSKGVVPLSTWVLISNFKLSYNLLRRPDGTFNRHLAEFLDRKVTSNRVPVDGVVSMDVLI 409
           +S+ VVPL+T+VLISNFKL+YNLLRR DGTFNR LAEFLDRKV +N +PVDGV S D  I
Sbjct: 11  ESRSVVPLNTYVLISNFKLAYNLLRRADGTFNRDLAEFLDRKVPANAIPVDGVFSFD-HI 69

Query: 410 ERTTGVWGRVF 442
           ER TG++ RV+
Sbjct: 70  ERNTGLFNRVY 80


>tr|A7U4T3|A7U4T3_9TRAC Putative gibberellin receptor OS=Selaginella
           kraussiana GN=GID1 PE=2 SV=1
          Length = 367

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 48/71 (67%), Positives = 59/71 (83%)
 Frame = +2

Query: 230 DSKGVVPLSTWVLISNFKLSYNLLRRPDGTFNRHLAEFLDRKVTSNRVPVDGVVSMDVLI 409
           +SK VVPLSTWVLISN K++Y L R+PDG+FNR LAEFLDRKV      VDGVVSMDV++
Sbjct: 14  ESKEVVPLSTWVLISNLKVAYTLARQPDGSFNRELAEFLDRKVAP--CNVDGVVSMDVVM 71

Query: 410 ERTTGVWGRVF 442
           +R+TG+W R+F
Sbjct: 72  DRSTGLWSRIF 82