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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955936
Clone id TST39A01NGRL0024_G21
Library
Length 302
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_G21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GCATCTAGCTGTTGCAAGAGGGCTTGTACGCAAGGGAGGGACCATAACGGGTCTCGGCCT
TTACTCTTGTACAGATGGAGCTATGGATGCATTGAGAAGGCCTTGCATTTCTATCCAAGC
TCTGAGAGGTATGCTATCATAAAAATGTTTCTGGTTTTACACACTTTGACAAGGTTGCTT
TTTTTGAGTGGATAAGGTTCCAAGTGTACAAATTAACTCTTTTGTGTTCTTATTATGTAA
TGAGCATTGCGCATGTATCCCACACAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCC
AA
■■Homology search results ■■ -
sp_hit_id A6LPX4
Definition sp|A6LPX4|LEUC_CLOB8 3-isopropylmalate dehydratase large subunit OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)
Align length 47
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955936|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_G21, 5'
         (265 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6LPX4|LEUC_CLOB8 3-isopropylmalate dehydratase large subunit...    30   2.9  
sp|Q18AJ2|LEUC_CLOD6 3-isopropylmalate dehydratase large subunit...    30   5.0  

>sp|A6LPX4|LEUC_CLOB8 3-isopropylmalate dehydratase large subunit
           OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB
           8052) GN=leuC PE=3 SV=1
          Length = 419

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 17  RGLVRKGGTITGLGLYSCTDGAMDALRRPCISIQALRGMLS*KCFWF 157
           +GLV  G  + G   ++CT GA+ A      S     GM + KC WF
Sbjct: 110 KGLVVAGDVVIGADSHTCTYGALGAFSTGIGSTDMAAGMATGKC-WF 155


>sp|Q18AJ2|LEUC_CLOD6 3-isopropylmalate dehydratase large subunit
           OS=Clostridium difficile (strain 630) GN=leuC PE=3 SV=1
          Length = 425

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 17  RGLVRKGGTITGLGLYSCTDGAMDALRRPCISIQALRGMLS*KCFWF 157
           +G+V  G  I G   ++CT GA+ A      S     GM + KC WF
Sbjct: 110 KGIVTAGDVIIGADSHTCTYGALGAFSTGVGSTDMGAGMATGKC-WF 155
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955936|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_G21, 5'
         (265 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******