DK955941 |
Clone id |
TST39A01NGRL0024_H02 |
Library |
TST39 |
Length |
647 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_H02. 5' end sequence. |
Accession |
DK955941 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL3056Contig1 |
Sequence |
CTCTGCTCGCTCACTAATCTTCGTGGCGATGGCGAGAGGACCCACGTCCAGTGCTGAAAA TGTTTGATCATTATCACAATCATCTTCAGAGACAGCAATGCAAGACGAGTCAGATGTGTT ATCTACAGGGCGGTTCTAGCTCAGGGTGTTTAACCATGTCTGCTTCTCTGCTACTGCTCC CCCTTCTACTGCTCATGTTGGTCTGCAGAGTGAGCTACATTGTCGCAGATAGCAAGCTCG CGCAGCCCGCGCTCTCAGGAGGCCAAGAAAGAGGTGCATTGAGTGAAGCAGATCAATTGG GTCTTCTCAATAATGTTACAGATTGGGAGATAATTCCTCACCCTGGATTGGCGAACCAAT TTTTCAATACCAGCCGGCGGACGCTAGGGAGTTTTCGTGTGTGTGCGCTGTGCACATGCT GTGGTGGGCGCCGAAGGTTTTGCATACCAACAGCATGCTGTTATGCAATCACATGTGGCT CTCCCAACCGGCCTTTTGGCTTCTGTTCGTTCAAACCGATGTCATGTAATTGTCTTGGGT GTCGTCTATAGGCAGACCATGTAACATTAGTATAGTGGTTTGGCTCAATGGAGCTTGTTG AGCCTTCCACAATGTTAAGTGAAGCTGCTCTGGAATGTTAAGTGAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P36000 |
Definition |
sp|P36000|AP1B1_YEAST AP-1 complex subunit beta-1 OS=Saccharomyces cerevisiae |
Align length |
41 |
Score (bit) |
31.6 |
E-value |
3.7 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NQF0 |
Definition |
tr|A9NQF0|A9NQF0_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
80 |
Score (bit) |
119.0 |
E-value |
2.0e-25 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955941|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_H02, 5' (647 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NQF0|A9NQF0_PICSI Putative uncharacterized protein OS=Picea... 119 2e-25 tr|A7PV94|A7PV94_VITVI Chromosome chr4 scaffold_32, whole genome... 108 2e-22 tr|Q949T1|Q949T1_ARATH Putative uncharacterized protein At1g6529... 103 9e-21 tr|Q8L9P3|Q8L9P3_ARATH Putative uncharacterized protein OS=Arabi... 103 9e-21 tr|Q8H130|Q8H130_ARATH Putative uncharacterized protein At1g6529... 103 9e-21 tr|Q2HW15|Q2HW15_MEDTR Putative uncharacterized protein OS=Medic... 103 1e-20 tr|B7FHF8|B7FHF8_MEDTR Putative uncharacterized protein OS=Medic... 101 3e-20 tr|B6T9L5|B6T9L5_MAIZE Putative uncharacterized protein OS=Zea m... 97 6e-19 tr|B6T7C1|B6T7C1_MAIZE Putative uncharacterized protein OS=Zea m... 97 6e-19 tr|A2WYC9|A2WYC9_ORYSI Putative uncharacterized protein OS=Oryza... 97 8e-19 tr|Q2R4R8|Q2R4R8_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 97 1e-18 tr|B6SN62|B6SN62_MAIZE Putative uncharacterized protein OS=Zea m... 97 1e-18 tr|A2ZE23|A2ZE23_ORYSI Putative uncharacterized protein OS=Oryza... 97 1e-18 tr|Q5JLC4|Q5JLC4_ORYSJ Putative uncharacterized protein P0413C03... 96 1e-18 tr|A3A0X6|A3A0X6_ORYSJ cDNA, clone: J065041P21, full insert sequ... 96 1e-18 tr|B6UGH9|B6UGH9_MAIZE Putative uncharacterized protein OS=Zea m... 92 3e-17 tr|B6U3G4|B6U3G4_MAIZE Putative uncharacterized protein OS=Zea m... 92 3e-17 tr|B6TT45|B6TT45_MAIZE Putative uncharacterized protein OS=Zea m... 92 3e-17 tr|B4FVQ6|B4FVQ6_MAIZE Putative uncharacterized protein OS=Zea m... 92 3e-17 tr|A9RCJ8|A9RCJ8_PHYPA Predicted protein (Fragment) OS=Physcomit... 92 4e-17 tr|A9RK92|A9RK92_PHYPA Predicted protein (Fragment) OS=Physcomit... 91 8e-17 tr|A9RB81|A9RB81_PHYPA Predicted protein OS=Physcomitrella paten... 89 2e-16 tr|A9TZE1|A9TZE1_PHYPA Predicted protein OS=Physcomitrella paten... 87 9e-16 tr|A9S1I6|A9S1I6_PHYPA Predicted protein (Fragment) OS=Physcomit... 87 1e-15 tr|A7Q9T5|A7Q9T5_VITVI Chromosome chr8 scaffold_68, whole genome... 64 8e-09 tr|A5B5S3|A5B5S3_VITVI Putative uncharacterized protein OS=Vitis... 64 8e-09 tr|Q2RB88|Q2RB88_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 60 1e-07 tr|Q2QYG0|Q2QYG0_ORYSJ Os12g0121000 protein OS=Oryza sativa subs... 60 1e-07 tr|A2ZHJ5|A2ZHJ5_ORYSI Putative uncharacterized protein OS=Oryza... 60 1e-07 tr|A2ZAW4|A2ZAW4_ORYSI Putative uncharacterized protein OS=Oryza... 60 1e-07
>tr|A9NQF0|A9NQF0_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 137
Score = 119 bits (297), Expect = 2e-25 Identities = 48/80 (60%), Positives = 58/80 (72%), Gaps = 1/80 (1%) Frame = +3
Query: 312 NVTDWEIIPHPGLAN-QFFNTSRRTLGSFRVCALCTCCGGRRRFCIPTACCYAITCGSPN 488 N T WE+ P P A+ Q FN +RR LG+F++C+LCTCCGGR C+P+ CCYAI C PN Sbjct: 58 NHTTWEMRPFPSEASYQIFNETRRKLGTFQICSLCTCCGGRHHLCLPSPCCYAINCNIPN 117
Query: 489 RPFGFCSFKPMSCNCLGCRL 548 RPFG CSF P +CNC GC L Sbjct: 118 RPFGLCSFTPKACNCFGCHL 137
>tr|A7PV94|A7PV94_VITVI Chromosome chr4 scaffold_32, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00025103001 PE=4 SV=1 Length = 117
Score = 108 bits (271), Expect = 2e-22 Identities = 42/61 (68%), Positives = 48/61 (78%) Frame = +3
Query: 366 NTSRRTLGSFRVCALCTCCGGRRRFCIPTACCYAITCGSPNRPFGFCSFKPMSCNCLGCR 545 N SRR LGSF++CALCTCCGG + C+P+ CCYAI C PNRPFGFCSF P +CNC GC Sbjct: 57 NESRRRLGSFQICALCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCH 116
Query: 546 L 548 L Sbjct: 117 L 117
>tr|Q949T1|Q949T1_ARATH Putative uncharacterized protein At1g65295 (Fragment) OS=Arabidopsis thaliana GN=At1g65295 PE=2 SV=2 Length = 105
Score = 103 bits (257), Expect = 9e-21 Identities = 37/61 (60%), Positives = 48/61 (78%) Frame = +3
Query: 366 NTSRRTLGSFRVCALCTCCGGRRRFCIPTACCYAITCGSPNRPFGFCSFKPMSCNCLGCR 545 N +RR LGSF++C++CTCCGG + C+P+ CCYAI C PNRPFG+CSF P +CNC GC Sbjct: 45 NETRRKLGSFQICSVCTCCGGAKGLCLPSPCCYAINCNIPNRPFGYCSFTPKTCNCFGCH 104
Query: 546 L 548 + Sbjct: 105 I 105
>tr|Q8L9P3|Q8L9P3_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=4 SV=1 Length = 115
Score = 103 bits (257), Expect = 9e-21 Identities = 37/61 (60%), Positives = 48/61 (78%) Frame = +3
Query: 366 NTSRRTLGSFRVCALCTCCGGRRRFCIPTACCYAITCGSPNRPFGFCSFKPMSCNCLGCR 545 N +RR LGSF++C++CTCCGG + C+P+ CCYAI C PNRPFG+CSF P +CNC GC Sbjct: 55 NETRRKLGSFQICSVCTCCGGAKGLCLPSPCCYAINCNIPNRPFGYCSFTPKTCNCFGCH 114
Query: 546 L 548 + Sbjct: 115 I 115
>tr|Q8H130|Q8H130_ARATH Putative uncharacterized protein At1g65295 OS=Arabidopsis thaliana GN=At1g65295 PE=4 SV=1 Length = 115
Score = 103 bits (257), Expect = 9e-21 Identities = 37/61 (60%), Positives = 48/61 (78%) Frame = +3
Query: 366 NTSRRTLGSFRVCALCTCCGGRRRFCIPTACCYAITCGSPNRPFGFCSFKPMSCNCLGCR 545 N +RR LGSF++C++CTCCGG + C+P+ CCYAI C PNRPFG+CSF P +CNC GC Sbjct: 55 NETRRKLGSFQICSVCTCCGGAKGLCLPSPCCYAINCNIPNRPFGYCSFTPKTCNCFGCH 114
Query: 546 L 548 + Sbjct: 115 I 115
>tr|Q2HW15|Q2HW15_MEDTR Putative uncharacterized protein OS=Medicago truncatula GN=MtrDRAFT_AC148289g12v2 PE=4 SV=1 Length = 118
Score = 103 bits (256), Expect = 1e-20 Identities = 41/68 (60%), Positives = 47/68 (69%) Frame = +3
Query: 345 GLANQFFNTSRRTLGSFRVCALCTCCGGRRRFCIPTACCYAITCGSPNRPFGFCSFKPMS 524 G N SRR LGSFR+CA+CTCCGG + CI + CCYAI C PN+PFG CSF P + Sbjct: 51 GKMMMMMNESRRKLGSFRICAICTCCGGAKGICIASPCCYAIDCNIPNKPFGLCSFIPKA 110
Query: 525 CNCLGCRL 548 CNC GC L Sbjct: 111 CNCFGCHL 118
>tr|B7FHF8|B7FHF8_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=4 SV=1 Length = 119
Score = 101 bits (252), Expect = 3e-20 Identities = 40/61 (65%), Positives = 45/61 (73%) Frame = +3
Query: 366 NTSRRTLGSFRVCALCTCCGGRRRFCIPTACCYAITCGSPNRPFGFCSFKPMSCNCLGCR 545 N SRR LGSFR CA+CTCCGG + CI + CCYAI C PN+PFG CSF P +CNC GC Sbjct: 59 NESRRKLGSFRTCAICTCCGGAKGICIASPCCYAIDCNIPNKPFGLCSFIPKACNCFGCH 118
Query: 546 L 548 L Sbjct: 119 L 119
>tr|B6T9L5|B6T9L5_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 132
Score = 97.4 bits (241), Expect = 6e-19 Identities = 51/109 (46%), Positives = 57/109 (52%), Gaps = 6/109 (5%) Frame = +3
Query: 240 AQPALSGGQERGALSEADQLGLLNNVTDWEIIPHPGLANQFFN------TSRRTLGSFRV 401 A PALS +A G N TD P L F + RR +G F+V Sbjct: 32 APPALS--------QQAGTGGGGGNATDSAAAWTPRLRKTFLDGGMERWRGRRLVGRFQV 83
Query: 402 CALCTCCGGRRRFCIPTACCYAITCGSPNRPFGFCSFKPMSCNCLGCRL 548 CA+CTCCGG CIP CCYAI C PNRPFG CSF P +CNCL C L Sbjct: 84 CAVCTCCGGPHGMCIPAPCCYAINCNIPNRPFGVCSFTPRTCNCLTCHL 132
>tr|B6T7C1|B6T7C1_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 128
Score = 97.4 bits (241), Expect = 6e-19 Identities = 38/58 (65%), Positives = 42/58 (72%) Frame = +3
Query: 375 RRTLGSFRVCALCTCCGGRRRFCIPTACCYAITCGSPNRPFGFCSFKPMSCNCLGCRL 548 RR +G F+VCA+CTCCGG CIP CCYAI C PNRPFG CSF P +CNCL C L Sbjct: 71 RRLVGRFQVCAVCTCCGGPHGMCIPAPCCYAINCNIPNRPFGVCSFTPRTCNCLNCHL 128
>tr|A2WYC9|A2WYC9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_04933 PE=4 SV=1 Length = 123
Score = 97.1 bits (240), Expect = 8e-19 Identities = 43/73 (58%), Positives = 49/73 (67%), Gaps = 5/73 (6%) Frame = +3
Query: 345 GLANQFFNTSRRTLGSFRVCALCTCCGG-----RRRFCIPTACCYAITCGSPNRPFGFCS 509 G + N +RR LGSF++CA CTCCGG R CI + CCYAI C PNRPFGFCS Sbjct: 51 GFSAMVLNETRRRLGSFQLCAPCTCCGGGGGGSRGGGCILSPCCYAINCNIPNRPFGFCS 110
Query: 510 FKPMSCNCLGCRL 548 F P SC+CLGC L Sbjct: 111 FTPKSCDCLGCNL 123
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