DK955947 |
Clone id |
TST39A01NGRL0024_H08 |
Library |
TST39 |
Length |
604 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_H08. 5' end sequence. |
Accession |
DK955947 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL593Contig1 |
Sequence |
CGGCTTTGGGTGCTCTTCCTCTCTCTCGCGCTACCTTCTGTGCATGAGCGCGAGAGAGAC TTCTGTGTAGTCCATGATGAGGAAGGCAGGTAGCCATCTCAGCAAGCTCGCCATTCGTAG CATTGCTTCCCAGCAGGTTACCCTCAACCCTTCTGTGTTTTCCAGCGCCTCCCGCCGAGG CTACGCTGACGACGCGTCGCTGAAGAAGACGCCCCTCTTTGATTATCATGTCGAAAATGG GGGTAAGATGGTACCTTTTGCCGGCTGGAGCATGCCTCTCCAATACAAGGACTCCATCAT GGACTCTACAACAAACTGCAGAGAGAATGGCAGCCTTTTTGATGTGTCGCATATGTGCGG TCTAAGCCTCAAAGGAAAGGATAGCATTGCTTTTCTTGAGAAGCTTGTTGTTGGCGATAT CACTGCTCTAGCTCCAGGCACAGGCACTCTCTCTGTCTTCACAAATGAAAAGGGGGGCAT TATCGACGACACTGTCATAACAAAAGTGAAGGATGATCACATTTACCTTGTGGTGAATGC TGGTTGTAGAGACAAAGATCTTGAACACATGGAGTCGCATCTGAAGCCCTTTCAAGCTTC CGGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P93256 |
Definition |
sp|P93256|GCST_MESCR Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum |
Align length |
145 |
Score (bit) |
247.0 |
E-value |
3.0e-65 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955947|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_H08, 5' (604 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P93256|GCST_MESCR Aminomethyltransferase, mitochondrial OS=Me... 247 3e-65 sp|O23936|GCST_FLATR Aminomethyltransferase, mitochondrial OS=Fl... 246 5e-65 sp|O49849|GCST_FLAAN Aminomethyltransferase, mitochondrial OS=Fl... 246 8e-65 sp|P54260|GCST_SOLTU Aminomethyltransferase, mitochondrial OS=So... 243 5e-64 sp|P49363|GCST_FLAPR Aminomethyltransferase, mitochondrial OS=Fl... 243 5e-64 sp|P49364|GCST_PEA Aminomethyltransferase, mitochondrial OS=Pisu... 239 8e-63 sp|O65396|GCST_ARATH Aminomethyltransferase, mitochondrial OS=Ar... 238 1e-62 sp|Q8CFA2|GCST_MOUSE Aminomethyltransferase, mitochondrial OS=Mu... 159 1e-38 sp|P48728|GCST_HUMAN Aminomethyltransferase, mitochondrial OS=Ho... 154 3e-37 sp|P25285|GCST_BOVIN Aminomethyltransferase, mitochondrial OS=Bo... 154 4e-37 sp|Q9TSZ7|GCST_CANFA Aminomethyltransferase, mitochondrial OS=Ca... 150 5e-36 sp|Q54DD3|GCST_DICDI Aminomethyltransferase, mitochondrial OS=Di... 148 2e-35 sp|P28337|GCST_CHICK Aminomethyltransferase, mitochondrial OS=Ga... 145 2e-34 sp|O14110|GCST_SCHPO Probable aminomethyltransferase, mitochondr... 125 1e-28 sp|P48015|GCST_YEAST Aminomethyltransferase, mitochondrial OS=Sa... 124 3e-28 sp|Q9WY54|GCST_THEMA Aminomethyltransferase OS=Thermotoga mariti... 118 3e-26 sp|A5IKL0|GCST_THEP1 Aminomethyltransferase OS=Thermotoga petrop... 115 2e-25 sp|Q666R5|GCST_YERPS Aminomethyltransferase OS=Yersinia pseudotu... 106 1e-22 sp|A4TIA5|GCST_YERPP Aminomethyltransferase OS=Yersinia pestis (... 106 1e-22 sp|Q1CEZ7|GCST_YERPN Aminomethyltransferase OS=Yersinia pestis b... 106 1e-22 sp|Q8ZHI6|GCST_YERPE Aminomethyltransferase OS=Yersinia pestis G... 106 1e-22 sp|Q1CB44|GCST_YERPA Aminomethyltransferase OS=Yersinia pestis b... 106 1e-22 sp|A7FF19|GCST_YERP3 Aminomethyltransferase OS=Yersinia pseudotu... 106 1e-22 sp|Q24TH3|GCST_DESHY Aminomethyltransferase OS=Desulfitobacteriu... 105 1e-22 sp|Q65HF9|GCST_BACLD Aminomethyltransferase OS=Bacillus lichenif... 104 3e-22 sp|P54378|GCST_BACSU Aminomethyltransferase OS=Bacillus subtilis... 104 4e-22 sp|Q8CSF4|GCST_STAES Aminomethyltransferase OS=Staphylococcus ep... 103 5e-22 sp|Q5HP12|GCST_STAEQ Aminomethyltransferase OS=Staphylococcus ep... 103 5e-22 sp|A6TMY6|GCST_ALKMQ Aminomethyltransferase OS=Alkaliphilus meta... 103 5e-22 sp|Q7W1C6|GCST_BORPA Aminomethyltransferase OS=Bordetella parape... 103 7e-22
>sp|P93256|GCST_MESCR Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCST PE=2 SV=1 Length = 408
Score = 247 bits (631), Expect = 3e-65 Identities = 117/145 (80%), Positives = 128/145 (88%) Frame = +2
Query: 170 SRRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVS 349 +RR +A +A LKKT L+D+HV NGGKMVPFAGWSMP+QYKDSIMDST NCRENGSLFDV+ Sbjct: 26 ARRCFASEADLKKTALYDFHVANGGKMVPFAGWSMPIQYKDSIMDSTINCRENGSLFDVA 85
Query: 350 HMCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYL 529 HMCGLSLKGKD I FLEKLVVGDI LAPGTGTLSV TNEKGG IDDTVITKV DDHIYL Sbjct: 86 HMCGLSLKGKDCIPFLEKLVVGDIAGLAPGTGTLSVLTNEKGGAIDDTVITKVTDDHIYL 145
Query: 530 VVNAGCRDKDLEHMESHLKPFQASG 604 VVNAGCR+KDL H+E H+K F+A G Sbjct: 146 VVNAGCREKDLAHIEEHMKAFKAKG 170
>sp|O23936|GCST_FLATR Aminomethyltransferase, mitochondrial OS=Flaveria trinervia GN=GDCST PE=3 SV=1 Length = 407
Score = 246 bits (629), Expect = 5e-65 Identities = 115/144 (79%), Positives = 128/144 (88%) Frame = +2
Query: 173 RRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSH 352 RR YA +A LKKT L+D+HV NGGKMVPFAGWSMP+QYKDSIM+ST NCRENGSLFDVSH Sbjct: 26 RRWYASEADLKKTVLYDFHVANGGKMVPFAGWSMPIQYKDSIMESTINCRENGSLFDVSH 85
Query: 353 MCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLV 532 MCGLSLKGKD +AFLEKLVV D+ LAPGTG+L+VFTNEKGG IDD+VITKV DDHIYLV Sbjct: 86 MCGLSLKGKDCVAFLEKLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLV 145
Query: 533 VNAGCRDKDLEHMESHLKPFQASG 604 VNAGCRDKDL H+E H+K F+A G Sbjct: 146 VNAGCRDKDLAHIEQHMKAFKAKG 169
>sp|O49849|GCST_FLAAN Aminomethyltransferase, mitochondrial OS=Flaveria anomala GN=GDCST PE=3 SV=1 Length = 407
Score = 246 bits (627), Expect = 8e-65 Identities = 115/144 (79%), Positives = 128/144 (88%) Frame = +2
Query: 173 RRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSH 352 RR YA +A LKKT L+D+HV +GGKMVPFAGWSMP+QYKDSIMDST NCRENGSLFDVSH Sbjct: 26 RRCYASEADLKKTVLYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTINCRENGSLFDVSH 85
Query: 353 MCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLV 532 MCGLSLKGKD +AFLEKLVV D+ LAPGTG+L+VFTNEKGG IDD+VITKV DDHIYLV Sbjct: 86 MCGLSLKGKDCVAFLEKLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLV 145
Query: 533 VNAGCRDKDLEHMESHLKPFQASG 604 VNAGCRDKDL H+E H+K F+A G Sbjct: 146 VNAGCRDKDLAHIEEHMKAFKAKG 169
>sp|P54260|GCST_SOLTU Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1 Length = 406
Score = 243 bits (620), Expect = 5e-64 Identities = 112/144 (77%), Positives = 128/144 (88%) Frame = +2
Query: 173 RRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSH 352 RR +A DA LKKT L+D+HV NGGKMVPFAGWSMP+QYKDSIMDST NCRENGSLFDVSH Sbjct: 26 RRCFASDADLKKTVLYDFHVVNGGKMVPFAGWSMPIQYKDSIMDSTVNCRENGSLFDVSH 85
Query: 353 MCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLV 532 MCGLSLKGKD+I FLEKLV+ D+ LAPGTG+L+VFTNEKGG IDD+V+TKV +DHIYLV Sbjct: 86 MCGLSLKGKDTIPFLEKLVIADVAGLAPGTGSLTVFTNEKGGAIDDSVVTKVTNDHIYLV 145
Query: 533 VNAGCRDKDLEHMESHLKPFQASG 604 VNAGCRDKDL H+E H+K F++ G Sbjct: 146 VNAGCRDKDLAHIEEHMKSFKSKG 169
>sp|P49363|GCST_FLAPR Aminomethyltransferase, mitochondrial OS=Flaveria pringlei GN=GDCST PE=2 SV=1 Length = 407
Score = 243 bits (620), Expect = 5e-64 Identities = 115/154 (74%), Positives = 130/154 (84%) Frame = +2
Query: 143 LNPSVFSSASRRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCR 322 L S + +RR YA +A LKKT L+D+HV NGGKMVPFAGWSMP+QYKDSIM+ST NCR Sbjct: 16 LGQSDKKTIARRCYASEADLKKTVLYDFHVANGGKMVPFAGWSMPIQYKDSIMESTINCR 75
Query: 323 ENGSLFDVSHMCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVIT 502 ENGSLFDVSHMCGLSLKGKD + FLEKLVV D+ L PGTG+L+VFTNEKGG IDD+VIT Sbjct: 76 ENGSLFDVSHMCGLSLKGKDCVPFLEKLVVADVAGLRPGTGSLTVFTNEKGGAIDDSVIT 135
Query: 503 KVKDDHIYLVVNAGCRDKDLEHMESHLKPFQASG 604 KV DDHIYLVVNAGCRDKDL H+E H+K F+A G Sbjct: 136 KVTDDHIYLVVNAGCRDKDLAHIEEHMKAFKAKG 169
>sp|P49364|GCST_PEA Aminomethyltransferase, mitochondrial OS=Pisum sativum GN=GDCST PE=1 SV=2 Length = 408
Score = 239 bits (610), Expect = 8e-63 Identities = 110/147 (74%), Positives = 130/147 (88%) Frame = +2
Query: 164 SASRRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFD 343 + +RR +A ++ LKKT L+D+HV +GGKMVPFAGWSMP+QYKDSIMDST NCR+NGSLFD Sbjct: 24 AVARRCFATESELKKTVLYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTLNCRQNGSLFD 83
Query: 344 VSHMCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHI 523 VSHMCGLSLKGKD ++FLEKLV+ D+ ALA GTGTL+VFTNEKGG IDD+VITKV DDH+ Sbjct: 84 VSHMCGLSLKGKDVVSFLEKLVIADVAALAHGTGTLTVFTNEKGGAIDDSVITKVTDDHL 143
Query: 524 YLVVNAGCRDKDLEHMESHLKPFQASG 604 YLVVNAGCRDKDL H+E H+K F+A G Sbjct: 144 YLVVNAGCRDKDLAHIEEHMKAFKAKG 170
>sp|O65396|GCST_ARATH Aminomethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=GDCST PE=1 SV=1 Length = 408
Score = 238 bits (608), Expect = 1e-62 Identities = 110/145 (75%), Positives = 127/145 (87%) Frame = +2
Query: 170 SRRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVS 349 SRR +A +A LKKT L+D+HV +GGKMVPFAGWSMP+QYKDSIMDST NCRENGSLFDV+ Sbjct: 26 SRRYFASEADLKKTALYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTVNCRENGSLFDVA 85
Query: 350 HMCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYL 529 HMCGLSLKGKD + FLE LVV D+ LAPGTG+L+VFTNEKGG IDD+VITKV D+HIYL Sbjct: 86 HMCGLSLKGKDCVPFLETLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDEHIYL 145
Query: 530 VVNAGCRDKDLEHMESHLKPFQASG 604 VVNAGCRDKDL H+E H+K F++ G Sbjct: 146 VVNAGCRDKDLAHIEEHMKAFKSKG 170
>sp|Q8CFA2|GCST_MOUSE Aminomethyltransferase, mitochondrial OS=Mus musculus GN=Amt PE=2 SV=1 Length = 403
Score = 159 bits (401), Expect = 1e-38 Identities = 73/135 (54%), Positives = 98/135 (72%) Frame = +2
Query: 200 LKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSHMCGLSLKGK 379 L++TPL+D+H+ +GGKMV FAGWS+P+QY+DS +DS + R + SLFDVSHM + G Sbjct: 33 LRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVDSHLHTRRHCSLFDVSHMLQTKIFGC 92
Query: 380 DSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLVVNAGCRDKD 559 D + LE +VVGDI L P GTLS+FTNE GGI+DD +++ + H+Y+V NAGCRDKD Sbjct: 93 DRVKLLESVVVGDIAELRPNQGTLSLFTNEAGGILDDLIVSNTSEGHLYVVSNAGCRDKD 152
Query: 560 LEHMESHLKPFQASG 604 L M+ +K FQ G Sbjct: 153 LALMQDKVKEFQNRG 167
>sp|P48728|GCST_HUMAN Aminomethyltransferase, mitochondrial OS=Homo sapiens GN=AMT PE=1 SV=1 Length = 403
Score = 154 bits (390), Expect = 3e-37 Identities = 70/135 (51%), Positives = 96/135 (71%) Frame = +2
Query: 200 LKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSHMCGLSLKGK 379 L++TPL+D+H+ +GGKMV FAGWS+P+QY+DS DS + R++ SLFDVSHM + G Sbjct: 33 LRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKILGS 92
Query: 380 DSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLVVNAGCRDKD 559 D + +E LVVGDI L P GTLS+FTNE GGI+DD ++T + H+Y+V NAGC +KD Sbjct: 93 DRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKD 152
Query: 560 LEHMESHLKPFQASG 604 L M+ ++ Q G Sbjct: 153 LALMQDKVRELQNQG 167
>sp|P25285|GCST_BOVIN Aminomethyltransferase, mitochondrial OS=Bos taurus GN=AMT PE=1 SV=1 Length = 397
Score = 154 bits (388), Expect = 4e-37 Identities = 70/135 (51%), Positives = 97/135 (71%) Frame = +2
Query: 200 LKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSHMCGLSLKGK 379 L +TPL+D+H+ +GGKMV FAGWS+P+QY+DS ++S + R++ SLFDVSHM + G Sbjct: 27 LHRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVNSHLHTRQHCSLFDVSHMLQTKIFGC 86
Query: 380 DSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLVVNAGCRDKD 559 D + +E LVVGDI L P GTLS+FTNE GGI+DD ++T + H+Y+V NAGCR+KD Sbjct: 87 DRVKLMESLVVGDIAELKPNQGTLSLFTNEAGGILDDLIVTSASEGHLYVVSNAGCREKD 146
Query: 560 LEHMESHLKPFQASG 604 L M+ ++ Q G Sbjct: 147 LTLMQDKVRELQNKG 161
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SLK1 |
Definition |
tr|A9SLK1|A9SLK1_PHYPA Aminomethyltransferase OS=Physcomitrella patens subsp. patens |
Align length |
177 |
Score (bit) |
251.0 |
E-value |
2.0e-65 |
Report |
|