DK955948 |
Clone id |
TST39A01NGRL0024_H09 |
Library |
TST39 |
Length |
536 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_H09. 5' end sequence. |
Accession |
DK955948 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL80Contig1 |
Sequence |
GCACCAGTAGCTTCCATCGCCATGGCCGACTCCTCTAAGAAGACTGGGAAGGTCAAATGG TTCAACGTCACTAAGGGCTTTGGCTTCATCACTCCCGACGATGGCTCAGAGGACCTGTTC GTGCATCAGACCTCCATTCATTCCGAGGGATTTCGCTCGCTGCAAGATGGCGAAGATGTG GAGTTCTTTGTGGAGAACGGCGACGATGGGCGCACCAAGGCGGTAGACGTGACGGGACCG AACGGGAATCCCGTGCAGGGATCAAACAGAGGTGGGGGAGATAGCTACGGCTATGGAGGA AGAGGTGGAGGTGGAGGTGGAGGTGGAGGCGGAGGAGGCAGAGGGAGGGGTCGAGGGGGT GCAAGAAGCAGCAACTATGGTGGAGGAGGTGGTGGATCTTGCTACAACTGTGGAGAGTCT GGTCATCTTGCCCGTGATTGTACTGATGGTAGCAGCAGACGAGGCGGTGGAAGTGGCGGT GGAGGAAGCGGCGGTGGAAGCCGCGGCTGCTACAACTGTGGCGAGCAAGGGCATCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P27484 |
Definition |
sp|P27484|GRP2_NICSY Glycine-rich protein 2 OS=Nicotiana sylvestris |
Align length |
81 |
Score (bit) |
114.0 |
E-value |
4.0e-25 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5BQ96 |
Definition |
tr|A5BQ96|A5BQ96_VITVI Putative uncharacterized protein OS=Vitis vinifera |
Align length |
75 |
Score (bit) |
125.0 |
E-value |
1.0e-27 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955948|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_H09, 5' (536 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A5BQ96|A5BQ96_VITVI Putative uncharacterized protein OS=Vitis... 125 1e-27 tr|A7P892|A7P892_VITVI Chromosome chr3 scaffold_8, whole genome ... 122 1e-26 tr|B4FNK1|B4FNK1_MAIZE Putative uncharacterized protein OS=Zea m... 121 2e-26 tr|B4FXR6|B4FXR6_MAIZE Putative uncharacterized protein OS=Zea m... 120 3e-26 tr|A9SQ74|A9SQ74_PHYPA Predicted protein (Fragment) OS=Physcomit... 118 2e-25 tr|Q3HRT2|Q3HRT2_PICGL Putative glycine-rich protein OS=Picea gl... 117 4e-25 tr|A9SBU8|A9SBU8_PHYPA Predicted protein OS=Physcomitrella paten... 117 4e-25 tr|A9S1L9|A9S1L9_PHYPA Predicted protein OS=Physcomitrella paten... 117 4e-25 tr|A9NNT8|A9NNT8_PICSI Putative uncharacterized protein OS=Picea... 117 4e-25 tr|Q6YUR8|Q6YUR8_ORYSJ Os02g0121100 protein OS=Oryza sativa subs... 115 2e-24 tr|B8AGK8|B8AGK8_ORYSI Putative uncharacterized protein OS=Oryza... 115 2e-24 tr|B6TP60|B6TP60_MAIZE Glycine-rich protein 2b OS=Zea mays PE=2 ... 111 2e-23 tr|B6SP06|B6SP06_MAIZE Glycine-rich protein 2b OS=Zea mays PE=2 ... 111 2e-23 tr|A7NV84|A7NV84_VITVI Chromosome chr18 scaffold_1, whole genome... 111 2e-23 tr|A5BWB0|A5BWB0_VITVI Putative uncharacterized protein OS=Vitis... 111 2e-23 tr|Q8GV23|Q8GV23_CHLRE Putative nucleic acid binding protein OS=... 110 4e-23 tr|Q1WLV5|Q1WLV5_CHLIN Putative nucleic acid-binding protein (Fr... 110 5e-23 tr|Q84UR8|Q84UR8_ORYSJ Os08g0129200 protein OS=Oryza sativa subs... 109 1e-22 tr|B6U2B9|B6U2B9_MAIZE Glycine-rich protein 2b OS=Zea mays PE=2 ... 109 1e-22 tr|A2YQW2|A2YQW2_ORYSI Putative uncharacterized protein OS=Oryza... 109 1e-22 tr|A3BPB0|A3BPB0_ORYSJ Putative uncharacterized protein OS=Oryza... 108 2e-22 tr|A5BG48|A5BG48_VITVI Putative uncharacterized protein OS=Vitis... 108 2e-22 tr|A1YQX3|A1YQX3_VOLCA Nucleic acid binding protein OS=Volvox ca... 108 2e-22 tr|B7G7Y1|B7G7Y1_PHATR Predicted protein OS=Phaeodactylum tricor... 105 1e-21 tr|Q8LPA7|Q8LPA7_WHEAT Cold shock protein-1 OS=Triticum aestivum... 105 2e-21 tr|A7QDX1|A7QDX1_VITVI Chromosome chr4 scaffold_83, whole genome... 105 2e-21 tr|Q75QN8|Q75QN8_WHEAT Cold shock domain protein 3 OS=Triticum a... 104 3e-21 tr|Q75QN9|Q75QN9_WHEAT Cold shock domain protein 2 (Putative gly... 103 4e-21 tr|Q5BIT2|Q5BIT2_ARATH At2g21060 OS=Arabidopsis thaliana PE=2 SV=1 103 7e-21 tr|O65639|O65639_ARATH Glycine-rich protein OS=Arabidopsis thali... 102 1e-20
>tr|A5BQ96|A5BQ96_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040408 PE=4 SV=1 Length = 219
Score = 125 bits (314), Expect = 1e-27 Identities = 59/75 (78%), Positives = 65/75 (86%) Frame = +1
Query: 34 SKKTGKVKWFNVTKGFGFITPDDGSEDLFVHQTSIHSEGFRSLQDGEDVEFFVENGDDGR 213 S+ TG VKWFN KGFGFITPDDG +DLFVHQ+SI SEGFRSL +GE VEF VE+ DDGR Sbjct: 2 SRVTGTVKWFNDQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLGEGEAVEFVVESSDDGR 61
Query: 214 TKAVDVTGPNGNPVQ 258 TKAVDVTGP+GNPVQ Sbjct: 62 TKAVDVTGPDGNPVQ 76
>tr|A7P892|A7P892_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036092001 PE=4 SV=1 Length = 146
Score = 122 bits (306), Expect = 1e-26 Identities = 57/75 (76%), Positives = 64/75 (85%) Frame = +1
Query: 34 SKKTGKVKWFNVTKGFGFITPDDGSEDLFVHQTSIHSEGFRSLQDGEDVEFFVENGDDGR 213 S+ TG VKWFN KGFGFITPDDG +DLFVHQ+SI SEGFRSL +GE VEF VE+ DDGR Sbjct: 2 SRVTGTVKWFNDQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLGEGEAVEFVVESSDDGR 61
Query: 214 TKAVDVTGPNGNPVQ 258 TKAVDVTGP+GNP + Sbjct: 62 TKAVDVTGPDGNPCE 76
>tr|B4FNK1|B4FNK1_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 395
Score = 121 bits (304), Expect = 2e-26 Identities = 57/79 (72%), Positives = 69/79 (87%) Frame = +1
Query: 22 MADSSKKTGKVKWFNVTKGFGFITPDDGSEDLFVHQTSIHSEGFRSLQDGEDVEFFVENG 201 MA ++++ G VKWFN TKGFGFI+P+DGSEDLFVHQ+SI SEGFRSL +GE+VEF V G Sbjct: 1 MAAAARQRGTVKWFNDTKGFGFISPEDGSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEG 60
Query: 202 DDGRTKAVDVTGPNGNPVQ 258 DDGRTKAVDVTGP+G+ V+ Sbjct: 61 DDGRTKAVDVTGPDGSFVR 79
>tr|B4FXR6|B4FXR6_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 303
Score = 120 bits (302), Expect = 3e-26 Identities = 59/85 (69%), Positives = 71/85 (83%) Frame = +1
Query: 4 PVASIAMADSSKKTGKVKWFNVTKGFGFITPDDGSEDLFVHQTSIHSEGFRSLQDGEDVE 183 PVA + A +++ G VKWFN TKGFGFI+P+DGSEDLFVHQ+SI SEGFRSL +GE+VE Sbjct: 51 PVADLPAA--ARQRGTVKWFNDTKGFGFISPEDGSEDLFVHQSSIKSEGFRSLAEGEEVE 108
Query: 184 FFVENGDDGRTKAVDVTGPNGNPVQ 258 F V GDDGRTKAVDVTGP+G+ V+ Sbjct: 109 FSVSEGDDGRTKAVDVTGPDGSFVR 133
>tr|A9SQ74|A9SQ74_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_47533 PE=4 SV=1 Length = 178
Score = 118 bits (296), Expect = 2e-25 Identities = 56/75 (74%), Positives = 65/75 (86%) Frame = +1
Query: 34 SKKTGKVKWFNVTKGFGFITPDDGSEDLFVHQTSIHSEGFRSLQDGEDVEFFVENGDDGR 213 +K+TGKVKWFN +KGFGFITPD G EDLFVHQTSIH+EGFRSL++GE VEF VE+ +DGR Sbjct: 1 AKETGKVKWFNSSKGFGFITPDKGGEDLFVHQTSIHAEGFRSLREGEVVEFQVESSEDGR 60
Query: 214 TKAVDVTGPNGNPVQ 258 TKA+ VTGP G VQ Sbjct: 61 TKALAVTGPGGAFVQ 75
>tr|Q3HRT2|Q3HRT2_PICGL Putative glycine-rich protein OS=Picea glauca PE=2 SV=1 Length = 156
Score = 117 bits (293), Expect = 4e-25 Identities = 55/74 (74%), Positives = 65/74 (87%) Frame = +1
Query: 37 KKTGKVKWFNVTKGFGFITPDDGSEDLFVHQTSIHSEGFRSLQDGEDVEFFVENGDDGRT 216 K++GKVKWF+ TKG+GFITPDDGSEDLFVHQTSIHS GFRSL +GE VE+ VE+ + GRT Sbjct: 5 KRSGKVKWFDSTKGYGFITPDDGSEDLFVHQTSIHSNGFRSLAEGEAVEYTVEHENGGRT 64
Query: 217 KAVDVTGPNGNPVQ 258 KA+DVTGP+G VQ Sbjct: 65 KALDVTGPDGAFVQ 78
>tr|A9SBU8|A9SBU8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_183211 PE=4 SV=1 Length = 198
Score = 117 bits (293), Expect = 4e-25 Identities = 55/75 (73%), Positives = 65/75 (86%) Frame = +1
Query: 34 SKKTGKVKWFNVTKGFGFITPDDGSEDLFVHQTSIHSEGFRSLQDGEDVEFFVENGDDGR 213 +K+TGKVKWFN +KGFGFITPD G +DLFVHQTSIH+EGFRSL++GE VEF VE+ +DGR Sbjct: 12 AKETGKVKWFNSSKGFGFITPDKGGDDLFVHQTSIHAEGFRSLREGEVVEFQVESSEDGR 71
Query: 214 TKAVDVTGPNGNPVQ 258 TKA+ VTGP G VQ Sbjct: 72 TKALAVTGPGGAFVQ 86
>tr|A9S1L9|A9S1L9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_180264 PE=4 SV=1 Length = 187
Score = 117 bits (293), Expect = 4e-25 Identities = 55/75 (73%), Positives = 65/75 (86%) Frame = +1
Query: 34 SKKTGKVKWFNVTKGFGFITPDDGSEDLFVHQTSIHSEGFRSLQDGEDVEFFVENGDDGR 213 +K+TGKVKWFN +KGFGFITPD G +DLFVHQTSIH+EGFRSL++GE VEF VE+ +DGR Sbjct: 12 AKETGKVKWFNSSKGFGFITPDKGGDDLFVHQTSIHAEGFRSLREGEVVEFQVESSEDGR 71
Query: 214 TKAVDVTGPNGNPVQ 258 TKA+ VTGP G VQ Sbjct: 72 TKALAVTGPGGAFVQ 86
>tr|A9NNT8|A9NNT8_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 205
Score = 117 bits (293), Expect = 4e-25 Identities = 55/74 (74%), Positives = 65/74 (87%) Frame = +1
Query: 37 KKTGKVKWFNVTKGFGFITPDDGSEDLFVHQTSIHSEGFRSLQDGEDVEFFVENGDDGRT 216 K++GKVKWF+ TKG+GFITPDDGSEDLFVHQTSIHS GFRSL +GE VE+ VE+ + GRT Sbjct: 5 KRSGKVKWFDSTKGYGFITPDDGSEDLFVHQTSIHSNGFRSLAEGEAVEYTVEHENGGRT 64
Query: 217 KAVDVTGPNGNPVQ 258 KA+DVTGP+G VQ Sbjct: 65 KALDVTGPDGAFVQ 78
>tr|Q6YUR8|Q6YUR8_ORYSJ Os02g0121100 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0088N06.21 PE=2 SV=1 Length = 241
Score = 115 bits (287), Expect = 2e-24 Identities = 53/79 (67%), Positives = 66/79 (83%) Frame = +1
Query: 22 MADSSKKTGKVKWFNVTKGFGFITPDDGSEDLFVHQTSIHSEGFRSLQDGEDVEFFVENG 201 MA +++ G VKWFN TKGFGFI+PDDGSEDLFVHQ+SI ++GFRSL +GE VEF + Sbjct: 1 MAAAARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLAEGEQVEFAISES 60
Query: 202 DDGRTKAVDVTGPNGNPVQ 258 +DGRTKAVDVTGP+G+ V+ Sbjct: 61 EDGRTKAVDVTGPDGSFVK 79
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