DK955951 |
Clone id |
TST39A01NGRL0024_H12 |
Library |
TST39 |
Length |
588 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_H12. 5' end sequence. |
Accession |
DK955951 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1174Contig1 |
Sequence |
CCCTACGACTTATCCGTCCGGGCGCTGAAGGCCGTCACCGAACGGGGCAATGTTTTCTTC TGTCTCGTCCAGCTTCCCGCGTCAATACCTTTGCCGGTGATGATGGAGGAGCGCCTTCGC TACAGCAAACAGGAGCTGTTGAGCTTGCAGGAGGCAGGCGAAGAGGAGGGGCAGTGGCAG TGCATAGCTGCTGCCATCCCGCCAGGGCTTCTCAATCAGACTTCAGAACCGTCTCCTCCT TACCCCCGTGGCAGAAAGGTCGACCGGCGTCAAGGATCGAAACATCATGTGCCGGCACCC CCAGAAGCTTCACCATGTGCCATTACCCCTCCACTATTCCTTCAGCCTAGGGAGAGTGTA GATGAAGAGATGTGTAGTCTAGATGGATATGTAAATCATACTGATGAAGAAGAGGATGCT TCAGATGATAGCGAGGATGAGGTCAGCCTTCAACCGCTTGCTTTCATGGTGGATGGTAAA CCGGACTTTGAATCAGGCTCACCGCAAGATGGCTTTGAATATTTGAGAAGGGTCATGTGG GAGGCAGCTCAATGTCCAAAAGGTGAAAGTAGCCAAAGATTGGTGAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q75BI0 |
Definition |
sp|Q75BI0|LDB19_ASHGO Protein LDB19 OS=Ashbya gossypii |
Align length |
79 |
Score (bit) |
36.6 |
E-value |
0.096 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RMB0 |
Definition |
tr|A9RMB0|A9RMB0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
39 |
Score (bit) |
70.1 |
E-value |
9.0e-11 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955951|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_H12, 5' (588 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RMB0|A9RMB0_PHYPA Predicted protein OS=Physcomitrella paten... 70 9e-11 tr|A3CAL3|A3CAL3_ORYSJ Putative uncharacterized protein OS=Oryza... 63 1e-08 tr|A7QS54|A7QS54_VITVI Chromosome chr5 scaffold_156, whole genom... 61 4e-08 tr|Q53MI2|Q53MI2_ORYSJ Os11g0293300 protein OS=Oryza sativa subs... 59 2e-07 tr|B6TZU2|B6TZU2_MAIZE Survival motor neuron containing protein ... 59 2e-07 tr|A2ZDH9|A2ZDH9_ORYSI Putative uncharacterized protein OS=Oryza... 59 2e-07 tr|Q9SLJ6|Q9SLJ6_ARATH F20D21.20 protein OS=Arabidopsis thaliana... 52 3e-05 tr|Q9C5M7|Q9C5M7_ARATH Putative uncharacterized protein At1g5438... 52 3e-05 tr|A4S371|A4S371_OSTLU Predicted protein OS=Ostreococcus lucimar... 50 1e-04 tr|Q010S9|Q010S9_OSTTA Ca2+-independent phospholipase A2 (ISS) O... 49 2e-04 tr|A5AQQ0|A5AQQ0_VITVI Putative uncharacterized protein OS=Vitis... 48 5e-04 tr|Q8S8D1|Q8S8D1_ARATH Putative uncharacterized protein At2g4251... 47 8e-04 tr|O61209|O61209_CAEEL Collagen protein 70 OS=Caenorhabditis ele... 38 0.37 tr|B8AHJ3|B8AHJ3_ORYSI Putative uncharacterized protein OS=Oryza... 37 0.64 tr|A5BSP1|A5BSP1_VITVI Putative uncharacterized protein OS=Vitis... 37 0.64 tr|Q69X59|Q69X59_ORYSJ Putative uncharacterized protein P0642B07... 37 1.1 tr|B4N720|B4N720_DROWI GK23635 OS=Drosophila willistoni GN=GK236... 36 1.4 tr|A8PA90|A8PA90_COPC7 Putative uncharacterized protein OS=Copri... 36 1.4 tr|B0UFF9|B0UFF9_METS4 MCP methyltransferase, CheR-type OS=Methy... 36 1.9 tr|B7KYX1|B7KYX1_METCH Putative uncharacterized protein OS=Methy... 36 1.9 tr|A8XMG5|A8XMG5_CAEBR CBR-FRL-1 protein OS=Caenorhabditis brigg... 35 3.2 tr|Q9DWF7|Q9DWF7_RCMVM PR34 OS=Rat cytomegalovirus (strain Maast... 35 4.1 tr|Q6K8H1|Q6K8H1_ORYSJ Os02g0469300 protein OS=Oryza sativa subs... 35 4.1 tr|Q6K8H0|Q6K8H0_ORYSJ ATP-binding region, ATPase-like domain-co... 35 4.1 tr|Q1PHS9|Q1PHS9_9ORYZ Shattering (Fragment) OS=Oryza glumipatul... 35 4.1 tr|A3A6P9|A3A6P9_ORYSJ Putative uncharacterized protein OS=Oryza... 35 4.1 tr|Q4SVB3|Q4SVB3_TETNG Chromosome undetermined SCAF13769, whole ... 34 5.4 tr|Q9BL72|Q9BL72_CAEEL Frl (Formin related gene in leukocytes) h... 34 5.4 tr|B6HEN6|B6HEN6_PENCH Pc20g08040 protein OS=Penicillium chrysog... 34 5.4 tr|Q6PBS8|Q6PBS8_DANRE Coiled-coil-helix-coiled-coil-helix domai... 34 7.1
>tr|A9RMB0|A9RMB0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_159939 PE=4 SV=1 Length = 483
Score = 70.1 bits (170), Expect = 9e-11 Identities = 30/39 (76%), Positives = 34/39 (87%) Frame = +1
Query: 445 SLQPLAFMVDGKPDFESGSPQDGFEYLRRVMWEAAQCPK 561 S QPLAF V+G+PDFESG PQDG+EYLRRV WE A+CPK Sbjct: 138 SFQPLAFAVEGEPDFESGEPQDGWEYLRRVKWEFARCPK 176
>tr|A3CAL3|A3CAL3_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_032335 PE=4 SV=1 Length = 318
Score = 63.2 bits (152), Expect = 1e-08 Identities = 52/153 (33%), Positives = 68/153 (44%), Gaps = 3/153 (1%) Frame = +1
Query: 112 RLRYSKQELLSLQEAGEEEGQ---WQCIAAAIPPGLLNQTSEPSPPYPRGRKVDRRQGSK 282 R RY++ +L +L+ A EE Q W ++AA+ + G D + Sbjct: 14 RTRYARGQLEALRAAPSEEAQARLWAEVSAALAAAGFS-----------GENGDSGVRYE 62
Query: 283 HHVPAPPEASPCAITPPLFLQPRESVDEEMCSLDGYVNHTXXXXXXXXXXXXXVSLQPLA 462 H+V P P F+Q + E+ S D Y L+P A Sbjct: 63 HYVDEPRSVLQVIEEP--FVQGGNAEYEDADSDDDYDG----------------ILKP-A 103
Query: 463 FMVDGKPDFESGSPQDGFEYLRRVMWEAAQCPK 561 F VDG PDFESG P DGFEYLRRV WEA Q P+ Sbjct: 104 FAVDGDPDFESGEPLDGFEYLRRVRWEANQIPR 136
>tr|A7QS54|A7QS54_VITVI Chromosome chr5 scaffold_156, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00005679001 PE=4 SV=1 Length = 267
Score = 61.2 bits (147), Expect = 4e-08 Identities = 26/39 (66%), Positives = 33/39 (84%) Frame = +1
Query: 445 SLQPLAFMVDGKPDFESGSPQDGFEYLRRVMWEAAQCPK 561 S+Q AF+V+G+PDF+SG P+DG EYLRRV WEAAQ P+ Sbjct: 39 SIQRPAFLVEGEPDFDSGPPEDGLEYLRRVRWEAAQIPE 77
>tr|Q53MI2|Q53MI2_ORYSJ Os11g0293300 protein OS=Oryza sativa subsp. japonica GN=Os11g0293300 PE=4 SV=1 Length = 366
Score = 58.9 bits (141), Expect = 2e-07 Identities = 26/34 (76%), Positives = 27/34 (79%) Frame = +1
Query: 460 AFMVDGKPDFESGSPQDGFEYLRRVMWEAAQCPK 561 AF VDG PDFESG P DGFEYLRRV WEA Q P+ Sbjct: 151 AFAVDGDPDFESGEPLDGFEYLRRVRWEANQIPR 184
>tr|B6TZU2|B6TZU2_MAIZE Survival motor neuron containing protein OS=Zea mays PE=2 SV=1 Length = 367
Score = 58.9 bits (141), Expect = 2e-07 Identities = 26/34 (76%), Positives = 27/34 (79%) Frame = +1
Query: 460 AFMVDGKPDFESGSPQDGFEYLRRVMWEAAQCPK 561 AF VDG PDFESG P DGFEYLRRV WEA Q P+ Sbjct: 153 AFAVDGDPDFESGEPLDGFEYLRRVRWEANQIPR 186
>tr|A2ZDH9|A2ZDH9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_35840 PE=4 SV=1 Length = 366
Score = 58.9 bits (141), Expect = 2e-07 Identities = 26/34 (76%), Positives = 27/34 (79%) Frame = +1
Query: 460 AFMVDGKPDFESGSPQDGFEYLRRVMWEAAQCPK 561 AF VDG PDFESG P DGFEYLRRV WEA Q P+ Sbjct: 151 AFAVDGDPDFESGEPLDGFEYLRRVRWEANQIPR 184
>tr|Q9SLJ6|Q9SLJ6_ARATH F20D21.20 protein OS=Arabidopsis thaliana GN=F20D21.20 PE=4 SV=1 Length = 300
Score = 52.0 bits (123), Expect = 3e-05 Identities = 22/33 (66%), Positives = 25/33 (75%) Frame = +1
Query: 460 AFMVDGKPDFESGSPQDGFEYLRRVMWEAAQCP 558 AF VDG+PDF +G P+DG EYLRRV WEA P Sbjct: 35 AFEVDGEPDFSTGPPEDGLEYLRRVRWEAKGIP 67
>tr|Q9C5M7|Q9C5M7_ARATH Putative uncharacterized protein At1g54380 OS=Arabidopsis thaliana GN=At1g54380 PE=2 SV=1 Length = 515
Score = 52.0 bits (123), Expect = 3e-05 Identities = 22/33 (66%), Positives = 25/33 (75%) Frame = +1
Query: 460 AFMVDGKPDFESGSPQDGFEYLRRVMWEAAQCP 558 AF VDG+PDF +G P+DG EYLRRV WEA P Sbjct: 289 AFEVDGEPDFSTGPPEDGLEYLRRVRWEAKGIP 321
>tr|A4S371|A4S371_OSTLU Predicted protein OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_33696 PE=4 SV=1 Length = 249
Score = 49.7 bits (117), Expect = 1e-04 Identities = 22/37 (59%), Positives = 27/37 (72%) Frame = +1
Query: 448 LQPLAFMVDGKPDFESGSPQDGFEYLRRVMWEAAQCP 558 L+ A VDG+PD+ +G P DGFEYLRRV +EA Q P Sbjct: 13 LRRRALAVDGEPDYSTGPPMDGFEYLRRVAFEARQTP 49
>tr|Q010S9|Q010S9_OSTTA Ca2+-independent phospholipase A2 (ISS) OS=Ostreococcus tauri GN=Ot09g04420 PE=4 SV=1 Length = 529
Score = 49.3 bits (116), Expect = 2e-04 Identities = 21/30 (70%), Positives = 24/30 (80%) Frame = +1
Query: 469 VDGKPDFESGSPQDGFEYLRRVMWEAAQCP 558 VDG+PD+ SG P DGFEYLRRV +EA Q P Sbjct: 29 VDGEPDYASGPPMDGFEYLRRVAYEARQSP 58
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