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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955952
Clone id TST39A01NGRL0024_H13
Library
Length 713
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_H13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTGTGTGTGTGTGTGTGTGTGCGCGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGC
TCCCTTACTCAAGATCCAGCCATGTCTGAAGAGCACCACCATCGCCACCACTTTGGGCAT
CACAAGCAAGAGGATGACGCTCCTCCACCCCCGCCTGCCGATTACACCTACTCCGAGGAT
GCCGTGCCCATCCAGTACACAGAATATTATGATGGGCCGCGCCGCCCTTCTGGCTACAGC
ACTACCACCGAAACCACCGAGGTGGTTGTGAAAACAGACGAGCATGGAAAGAAACATGAG
AAGGAGCACAAGACCAAAGAGCACGTTGGAGAAGCTCTTGGCGCAGCAGCTGGCGCTTAT
GCCTTGTATGAGCGTCATGAAGCGAAGAAGGACTCAGAGCATGCAGGGCGCCACAAGATG
GAAGAGCGGATAGCAGAGGCTGTTGTTGTGAGTGCCGGTGGGTATGCGCTCCATGAGCAC
CATGAGAAGAAAGAGTCAGTGGAGGAGGAAGAGGGTCATAAGAAGAAACACCACTTCTTC
TAAGTGCCTTTGTTTTTGCTTGATGTTTTGTCATGGGGATACATGTACATATCAAAACAT
GTTGTTTTCTGTGGCGGTAACCAAATAAATGTCCGGTGCCTGGGTACTGTATTTTGGGTG
CCTCCCCAAAAAAAGCTTTTTTTGCGGGGGAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q08655
Definition sp|Q08655|ASR1_SOLLC Abscisic stress-ripening protein 1 OS=Solanum lycopersicum
Align length 32
Score (bit) 48.1
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955952|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_H13, 5'
         (690 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q08655|ASR1_SOLLC Abscisic stress-ripening protein 1 OS=Solan...    48   4e-05
sp|P37219|ASR2_SOLLC Abscisic stress-ripening protein 2 OS=Solan...    43   0.001
sp|P37220|ASR3_SOLLC Abscisic stress-ripening protein 3 OS=Solan...    40   0.015
sp|O88799|ZAN_MOUSE Zonadhesin OS=Mus musculus GN=Zan PE=2 SV=1        34   0.84 
sp|Q9R0T4|CADH1_RAT Epithelial cadherin OS=Rattus norvegicus GN=...    32   4.2  
sp|Q80ZE4|MPRA_MOUSE Membrane progestin receptor alpha OS=Mus mu...    31   7.1  
sp|P52167|GATB_BOMMO Transcription factor BCFI OS=Bombyx mori GN...    31   7.1  
sp|Q24206|BRC4_DROME Broad-complex core protein isoform 6 OS=Dro...    31   7.1  
sp|Q5R7P7|TAF9B_PONAB Transcription initiation factor TFIID subu...    30   9.3  
sp|Q9HBM6|TAF9B_HUMAN Transcription initiation factor TFIID subu...    30   9.3  
sp|Q4P2B6|SEC31_USTMA Protein transport protein SEC31 OS=Ustilag...    30   9.3  
sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xen...    30   9.3  
sp|A2A2Z9|AN18B_HUMAN Ankyrin repeat domain-containing protein 1...    30   9.3  

>sp|Q08655|ASR1_SOLLC Abscisic stress-ripening protein 1 OS=Solanum
           lycopersicum GN=ASR1 PE=2 SV=1
          Length = 115

 Score = 48.1 bits (113), Expect = 4e-05
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = +1

Query: 373 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 468
           +HEAKKD EHA +HK+EE IA A  V AGG+A
Sbjct: 54  KHEAKKDPEHAHKHKIEEEIAAAAAVGAGGFA 85


>sp|P37219|ASR2_SOLLC Abscisic stress-ripening protein 2 OS=Solanum
           lycopersicum GN=ASR2 PE=4 SV=1
          Length = 114

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +1

Query: 373 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 468
           +H+AKKD EHA +HK+EE I     V AGG+A
Sbjct: 56  KHKAKKDPEHAHKHKIEEEIMAVAAVGAGGFA 87


>sp|P37220|ASR3_SOLLC Abscisic stress-ripening protein 3 OS=Solanum
           lycopersicum GN=ASR3 PE=4 SV=2
          Length = 108

 Score = 39.7 bits (91), Expect = 0.015
 Identities = 16/32 (50%), Positives = 24/32 (75%)
 Frame = +1

Query: 373 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 468
           +H+AKKD E+A +HK+++ IA    V AGG+A
Sbjct: 54  KHKAKKDPENAHKHKIKQEIAAVAAVGAGGFA 85


>sp|O88799|ZAN_MOUSE Zonadhesin OS=Mus musculus GN=Zan PE=2 SV=1
          Length = 5376

 Score = 33.9 bits (76), Expect = 0.84
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
 Frame = -3

Query: 310  CAPSH----VSFHARLFSQPPRWFRW*CCSQKGGAAHHNILCTGWARHPRSRCNRQAGVE 143
            C PS      SF  R F    +WF   C       +H++ILC  W    +  C+ + GV 
Sbjct: 1602 CVPSSQCGCTSFQGRYFKLQEQWFNPDCKEICTCESHNHILCKPWKCKAQEACSYKNGV- 1660

Query: 142  ERHPLACDAQ 113
                L C AQ
Sbjct: 1661 ----LGCHAQ 1666


>sp|Q9R0T4|CADH1_RAT Epithelial cadherin OS=Rattus norvegicus
           GN=Cdh1 PE=2 SV=1
          Length = 886

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
 Frame = -3

Query: 682 KKAFFGEAPKIQYPGTGHLFGYRHRKQHVLICTCIPMTKHQAKTKALRRSGVSSYDPLPP 503
           + AFF E  + +    G +   RH K H L            +T  L  +  SSY  L  
Sbjct: 69  RTAFFSEDSRFKVSTDGVITVKRHLKLHKL------------ETSFLVHAWDSSYRKLST 116

Query: 502 PLTLSSHGAHGAHTHRH----SQQQPLLSALPS 416
            +TL S G H  H H H    S+  P L   PS
Sbjct: 117 KVTLKSLG-HHHHRHHHRDPVSESNPELLTFPS 148


>sp|Q80ZE4|MPRA_MOUSE Membrane progestin receptor alpha OS=Mus
           musculus GN=Paqr7 PE=2 SV=2
          Length = 345

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -3

Query: 676 AFFGEA-PKIQYPGTGHLFGYRHRKQHVLICTCIPMTKHQAKTKALRRSGVSSYDPL 509
           AFF    P+  +PG+ H+FG  H+  HV +  C              R G+  Y+PL
Sbjct: 252 AFFSTVMPESWFPGSCHIFGQGHQVFHVFLVLCTLAQLEAVTLDYQARRGI--YEPL 306


>sp|P52167|GATB_BOMMO Transcription factor BCFI OS=Bombyx mori
           GN=GATA-B PE=2 SV=1
          Length = 508

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
 Frame = +3

Query: 63  PYSRSSHV*RAPPSP---PLWASQARG*RSSTPACRLHLLRGCRAHPVHRIL*WAAPPFW 233
           PYS        PP+P   P  AS   G  SS P  R   LR     P+H       PP+ 
Sbjct: 48  PYSHLDDSLFKPPTPGSAPPTASTCAGVPSSAPRRRPRRLRP--PAPLHYDDYAPPPPYS 105

Query: 234 LQHYHRNHRGGCENRRAWKET*EGAQDQRA 323
             H+H   +GG  N  A + T    Q +RA
Sbjct: 106 HDHHHHLEQGGGGNGAASRCTAVRLQQRRA 135


>sp|Q24206|BRC4_DROME Broad-complex core protein isoform 6
           OS=Drosophila melanogaster GN=br PE=1 SV=2
          Length = 880

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 26/63 (41%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = -3

Query: 544 LRRSGVSSYDPLPPPLTLSSHGAHGAHTHRHSQQQPLLSALPSCGALHA----LSPSSLH 377
           L R G +   P PPP    SH       H H  Q P LS LPS   LHA    LS ++ H
Sbjct: 575 LERPGGTGSPPPPPP----SH-------HSHFGQHP-LSLLPSHHQLHATHHELSAAAAH 622

Query: 376 DAH 368
            AH
Sbjct: 623 HAH 625


>sp|Q5R7P7|TAF9B_PONAB Transcription initiation factor TFIID subunit
           9B OS=Pongo abelii GN=TAF9B PE=2 SV=1
          Length = 251

 Score = 30.4 bits (67), Expect = 9.3
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 101 IATTLGITSKRMTLLHPRLPITPTPRMPCPSSTQNIMM 214
           +AT + +TS+R T+  P    TP   +P  ++ QN+++
Sbjct: 172 VATPMSVTSQRFTVQIPPSQSTPVKPVPATTAVQNVLI 209


>sp|Q9HBM6|TAF9B_HUMAN Transcription initiation factor TFIID subunit
           9B OS=Homo sapiens GN=TAF9B PE=1 SV=1
          Length = 251

 Score = 30.4 bits (67), Expect = 9.3
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 101 IATTLGITSKRMTLLHPRLPITPTPRMPCPSSTQNIMM 214
           +AT + +TS+R T+  P    TP   +P  ++ QN+++
Sbjct: 172 VATPMSVTSQRFTVQIPPSQSTPVKPVPATTAVQNVLI 209
tr_hit_id Q5MDK9
Definition tr|Q5MDK9|Q5MDK9_PSEMZ Water deficit inducible LP3-like protein (Fragment) OS=Pseudotsuga menziesii var. menziesii
Align length 32
Score (bit) 52.8
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955952|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_H13, 5'
         (690 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5MDK9|Q5MDK9_PSEMZ Water deficit inducible LP3-like protein ...    53   2e-05
tr|Q5MDK0|Q5MDK0_PSEMZ Water deficit inducible LP3-like protein ...    53   2e-05
tr|Q5MDJ5|Q5MDJ5_PSEMZ Water deficit inducible LP3-like protein ...    53   2e-05
tr|Q5MDJ3|Q5MDJ3_PSEMZ Water deficit inducible LP3-like protein ...    53   2e-05
tr|Q5MDH9|Q5MDH9_PSEMZ Water deficit inducible LP3-like protein ...    53   2e-05
tr|Q5MDH7|Q5MDH7_PSEMZ Water deficit inducible LP3-like protein ...    53   2e-05
tr|Q5MDH5|Q5MDH5_PSEMZ Water deficit inducible LP3-like protein ...    53   2e-05
tr|Q6S9Z8|Q6S9Z8_GINBI ASR protein OS=Ginkgo biloba PE=2 SV=1          50   1e-04
tr|A9NP62|A9NP62_PICSI Putative uncharacterized protein OS=Picea...    50   1e-04
tr|Q9ZRB6|Q9ZRB6_SOLTU Ci21A protein OS=Solanum tuberosum GN=ci2...    50   2e-04
tr|Q6IT49|Q6IT49_MUSAC Abscisic stress ripening protein-like pro...    49   3e-04
tr|B8YQ15|B8YQ15_MUSAC Abscisic stress ripening protein OS=Musa ...    49   3e-04
tr|A9NQS8|A9NQS8_PICSI Putative uncharacterized protein OS=Picea...    49   3e-04
tr|A9P0F2|A9P0F2_PICSI Putative uncharacterized protein OS=Picea...    49   4e-04
tr|Q9SEW0|Q9SEW0_LILLO Anth (Pollen-specific desiccation-associa...    48   5e-04
tr|Q2QJV3|Q2QJV3_SOLCE ASR1 OS=Solanum cheesmanii GN=Asr1 PE=4 SV=1    48   5e-04
tr|Q2QJV2|Q2QJV2_SOLLC ASR1 OS=Solanum lycopersicum var. cerasif...    48   5e-04
tr|Q2QJV1|Q2QJV1_SOLHA ASR1 OS=Solanum habrochaites GN=Asr1 PE=4...    48   5e-04
tr|Q2QJV0|Q2QJV0_SOLPE ASR1 OS=Lycopersicon peruvianum var. humi...    48   5e-04
tr|Q2QJU9|Q2QJU9_SOLCI ASR1 OS=Solanum chilense GN=Asr1 PE=4 SV=1      48   5e-04
tr|Q2QJU8|Q2QJU8_9SOLN ASR1 OS=Solanum corneliomuelleri GN=Asr1 ...    48   5e-04
tr|O82575|O82575_SOLLC Fruit-ripening protein OS=Solanum lycoper...    48   5e-04
tr|Q948L3|Q948L3_SACOF Drought inducible 22 kD protein OS=Saccha...    48   7e-04
tr|Q6EBV8|Q6EBV8_9POAL 22 kDa drought-inducible protein OS=Sacch...    48   7e-04
tr|B4FKG5|B4FKG5_MAIZE Abscisic stress ripening protein 2 OS=Zea...    48   7e-04
tr|A8IK82|A8IK82_MAIZE Dip protein OS=Zea mays PE=4 SV=1               48   7e-04
tr|A9P0G6|A9P0G6_PICSI Putative uncharacterized protein OS=Picea...    47   9e-04
tr|A9NPQ5|A9NPQ5_PICSI Putative uncharacterized protein OS=Picea...    47   9e-04
tr|Q93WZ6|Q93WZ6_PRUPE Abscisic stress ripening-like protein OS=...    47   0.001
tr|Q9FRV9|Q9FRV9_CALSL Putative ripening protein OS=Calystegia s...    47   0.002

>tr|Q5MDK9|Q5MDK9_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 124

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = +1

Query: 373 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 468
           +HEAKKD EHAGRHK+EE IA A  V +GGYA
Sbjct: 93  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 124


>tr|Q5MDK0|Q5MDK0_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 119

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = +1

Query: 373 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 468
           +HEAKKD EHAGRHK+EE IA A  V +GGYA
Sbjct: 88  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 119


>tr|Q5MDJ5|Q5MDJ5_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 124

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = +1

Query: 373 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 468
           +HEAKKD EHAGRHK+EE IA A  V +GGYA
Sbjct: 93  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 124


>tr|Q5MDJ3|Q5MDJ3_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 124

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = +1

Query: 373 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 468
           +HEAKKD EHAGRHK+EE IA A  V +GGYA
Sbjct: 93  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 124


>tr|Q5MDH9|Q5MDH9_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 119

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = +1

Query: 373 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 468
           +HEAKKD EHAGRHK+EE IA A  V +GGYA
Sbjct: 88  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 119


>tr|Q5MDH7|Q5MDH7_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 124

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = +1

Query: 373 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 468
           +HEAKKD EHAGRHK+EE IA A  V +GGYA
Sbjct: 93  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 124


>tr|Q5MDH5|Q5MDH5_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 124

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = +1

Query: 373 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 468
           +HEAKKD EHAGRHK+EE IA A  V +GGYA
Sbjct: 93  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 124


>tr|Q6S9Z8|Q6S9Z8_GINBI ASR protein OS=Ginkgo biloba PE=2 SV=1
          Length = 181

 Score = 50.4 bits (119), Expect = 1e-04
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = +1

Query: 373 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 468
           +HEAKKD EHA RHK+EE +A A  V AGGYA
Sbjct: 123 KHEAKKDPEHAHRHKIEEEVAAAAAVGAGGYA 154


>tr|A9NP62|A9NP62_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 157

 Score = 50.1 bits (118), Expect = 1e-04
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = +1

Query: 373 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 468
           +HEAKKD E+AGRHK+EE IA A  V +GGYA
Sbjct: 100 KHEAKKDPENAGRHKIEEEIAAAAAVGSGGYA 131


>tr|Q9ZRB6|Q9ZRB6_SOLTU Ci21A protein OS=Solanum tuberosum GN=ci21A
           PE=4 SV=1
          Length = 109

 Score = 49.7 bits (117), Expect = 2e-04
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = +1

Query: 373 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYAL 471
           +HEAKKD EHA +HK+EE IA A  V AGG+AL
Sbjct: 53  KHEAKKDPEHAHKHKIEEEIAAAAAVGAGGFAL 85