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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955956
Clone id TST39A01NGRL0024_H17
Library
Length 540
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_H17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GAGTCCAGTCAGAAGCTCCTGTTGGTTCTACTCCAAGCTTATCGCCCAGCCCTTCTCAGT
TTCACGAGAGGATTGCACTTACCCCTGTTGCCTCCCCTCCAACATCATCAGCAATTATTG
TAAGGGTCTCTTTGTGGGCTGTGCTGATGTGTGTGGCTGTCCATCAGCATTTGGTGACAT
GTAGTTAAGGTTCAAAGGGGATGTGTCATGCTGCAAACGTGGCGGCGTCCACTTCAGACT
CACAAGGGAGCTGGAGATGTTCTGTCAAAAGGTGTACTGTTCGTTCTATAGCTTTATCTC
ATGTATCATACCGGCGATACTGGTGTTTTGGACCACAATCTGGTCCAGTTCCAGGATAAA
GTCTCTCCTTTTTCTGTCAACATAAATTTGAAAGCAAACAGAGTTTTCTTGGCTTGTTAC
TATGGAAAAGCTAAGTGCTGTGTAGAAACTTGCCAAGCTTCATGTACCGACTTTTTGGGC
CCACAACTGGTGCTAATGTCACTTCCAGTTGCAATCTATCCCATGCCATACAAAACAGGA
■■Homology search results ■■ -
sp_hit_id P56720
Definition sp|P56720|SRBP1_RAT Sterol regulatory element-binding protein 1 OS=Rattus norvegicus
Align length 35
Score (bit) 31.6
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955956|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_H17, 5'
         (540 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P56720|SRBP1_RAT Sterol regulatory element-binding protein 1 ...    32   2.6  
sp|A5CS46|SEPF_CLAM3 Cell division protein sepF OS=Clavibacter m...    31   4.4  
sp|Q0BR48|3MGH_GRABC Putative 3-methyladenine DNA glycosylase OS...    30   5.7  
sp|B0RIJ8|SEPF_CLAMS Cell division protein sepF OS=Clavibacter m...    30   9.8  
sp|Q03211|PEXLP_TOBAC Pistil-specific extensin-like protein OS=N...    30   9.8  
sp|Q96JK9|MAML3_HUMAN Mastermind-like protein 3 OS=Homo sapiens ...    30   9.9  

>sp|P56720|SRBP1_RAT Sterol regulatory element-binding protein 1
           OS=Rattus norvegicus GN=Srebf1 PE=1 SV=3
          Length = 1134

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 9   SEAPVGSTPSLSPSPSQFHERIALTPVASPPTSSA 113
           S  P+GSTP +SP+P   H ++  +    PP +SA
Sbjct: 183 SSLPLGSTPGISPTP--LHTQVQSSAAQQPPPASA 215


>sp|A5CS46|SEPF_CLAM3 Cell division protein sepF OS=Clavibacter
           michiganensis subsp. michiganensis (strain NCPPB 382)
           GN=sepF PE=3 SV=1
          Length = 164

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +3

Query: 6   QSEAPVGSTPSLSPSPSQFHERIALTPVASPPTSS 110
           Q ++PV + P+ +P+P Q  +R  +TP+  P T++
Sbjct: 30  QQQSPVQAVPTPAPAPQQQAKRAPVTPLHKPSTTT 64


>sp|Q0BR48|3MGH_GRABC Putative 3-methyladenine DNA glycosylase
           OS=Granulibacter bethesdensis (strain ATCC BAA-1260 /
           CGDNIH1) GN=GbCGDNIH1_1806 PE=3 SV=1
          Length = 211

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +3

Query: 306 SYRRYWCFGPQSGPVPG*SLSFFCQHK---FESKQSFLGLLLWKS*VLCRNLPSFMYRLF 476
           SY  +WCF    GPVPG ++     H     E+ Q   G +  +   LCR  P  + +  
Sbjct: 83  SYGIHWCFNIVCGPVPGGAVLIRALHPMFGLEAMQLRRGAIRLRD--LCRG-PGRLCQAL 139

Query: 477 GPTTGANVTSSC 512
           G T G +  S C
Sbjct: 140 GITDGMDGLSLC 151


>sp|B0RIJ8|SEPF_CLAMS Cell division protein sepF OS=Clavibacter
           michiganensis subsp. sepedonicus (strain ATCC 33113 /
           JCM 9667) GN=sepF PE=3 SV=2
          Length = 164

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 6   QSEAPVGSTPSLSPSPSQFHERIALTPVASPPTSS 110
           Q ++PV + P+  P+P Q  +R  +TP+  P T++
Sbjct: 30  QQQSPVQAVPTPVPAPQQQAKRAPVTPLHKPSTTT 64


>sp|Q03211|PEXLP_TOBAC Pistil-specific extensin-like protein
           OS=Nicotiana tabacum PE=2 SV=1
          Length = 426

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 18  PVGSTPSLSPSPSQFHERIALTPVASPPTSSAIIVR 125
           PV   P ++PSPS   E   + P  SPP +  +I R
Sbjct: 237 PVAYPPVMTPSPSPAAEPPIIAPFPSPPANPPLIPR 272


>sp|Q96JK9|MAML3_HUMAN Mastermind-like protein 3 OS=Homo sapiens
           GN=MAML3 PE=1 SV=3
          Length = 1134

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -1

Query: 255 SSSLVSLKWTPPRLQHDTSPLNLNYMSPNADGQPHTSAQPTKRP 124
           ++SL S+  TP      +SP N    SP    Q HT  Q   RP
Sbjct: 391 ATSLPSVASTPAAPNPASSPANCAVQSPQTPNQAHTPGQAPPRP 434
tr_hit_id A8I3Y6
Definition tr|A8I3Y6|A8I3Y6_CHLRE Predicted protein OS=Chlamydomonas reinhardtii
Align length 30
Score (bit) 34.7
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955956|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_H17, 5'
         (540 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8I3Y6|A8I3Y6_CHLRE Predicted protein OS=Chlamydomonas reinha...    35   3.3  
tr|Q9GP87|Q9GP87_CIOIN Distal-less OS=Ciona intestinalis GN=Dll-...    34   5.7  
tr|Q4H3P9|Q4H3P9_CIOIN Transcription factor protein (Fragment) O...    34   5.7  
tr|B2GUP7|B2GUP7_XENTR Maml3 protein (Fragment) OS=Xenopus tropi...    33   9.7  
tr|A5N6I2|A5N6I2_CLOK5 Putative uncharacterized protein OS=Clost...    33   9.7  
tr|B6MKN9|B6MKN9_BRAFL Putative uncharacterized protein OS=Branc...    33   9.7  

>tr|A8I3Y6|A8I3Y6_CHLRE Predicted protein OS=Chlamydomonas reinhardtii
            GN=CHLREDRAFT_186837 PE=4 SV=1
          Length = 1077

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 84   PVASPPTSSAIIVRVSLWAVLMCVAVHQHL 173
            P A  P   A+++ VSLW V+MC+A ++H+
Sbjct: 977  PAAFEPLPPAMVLLVSLWDVVMCIAFYRHI 1006


>tr|Q9GP87|Q9GP87_CIOIN Distal-less OS=Ciona intestinalis GN=Dll-C
           PE=2 SV=1
          Length = 288

 Score = 33.9 bits (76), Expect = 5.7
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 231 WTPPRLQHDTSPLNLNYMSPNAD-GQPHTSAQPTKRP 124
           WTPP ++  TSP+  N MSPN +   PH S      P
Sbjct: 185 WTPPSVEEQTSPIPQNSMSPNHNMTSPHPSGGVNTSP 221


>tr|Q4H3P9|Q4H3P9_CIOIN Transcription factor protein (Fragment)
           OS=Ciona intestinalis GN=Ci-Dll-C PE=2 SV=1
          Length = 385

 Score = 33.9 bits (76), Expect = 5.7
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 231 WTPPRLQHDTSPLNLNYMSPNAD-GQPHTSAQPTKRP 124
           WTPP ++  TSP+  N MSPN +   PH S      P
Sbjct: 238 WTPPSVEEQTSPIPQNSMSPNHNMTSPHPSGGVNTSP 274


>tr|B2GUP7|B2GUP7_XENTR Maml3 protein (Fragment) OS=Xenopus
           tropicalis GN=maml3 PE=2 SV=1
          Length = 809

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -1

Query: 252 SSLVSLKWTPPRLQHDTSPLNLNYMSPNADGQPHTSAQPTKRP 124
           SS+ S+   P  L    SP +    SP    QPHT  QP+ RP
Sbjct: 130 SSIPSVSSAPSTLMLAGSPASCVVQSPQTPTQPHTPGQPSTRP 172


>tr|A5N6I2|A5N6I2_CLOK5 Putative uncharacterized protein
           OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 /
           NCIMB 10680) GN=CKL_0862 PE=4 SV=1
          Length = 226

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 435 LSFSIVTSQENSVCFQIYVDRKRRDFILELDQIVVQNTSIAGMIHEIKL*NEQYT 271
           +SFS+  S +  VC  IY +   +  +  L +  + NT I   IH+  L N + T
Sbjct: 89  VSFSVTDSDKTRVCMGIYTEENAKGIMDSLTKKNIDNTKIVFTIHQNDLYNVEVT 143


>tr|B6MKN9|B6MKN9_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_83608 PE=4 SV=1
          Length = 2377

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
 Frame = +1

Query: 298  LMYHTGDTGVLDHNLVQFQDKVSPFSVNINLKANRVF--LACYYGKA-KCCVETCQASCT 468
            L    GD   L HNL  + D  +   +NI    N     L+C        C   C A+CT
Sbjct: 1225 LCAQNGDMDSLCHNLEAYTDSCAEAGINIGTWRNATLCPLSCPTNSHYTSCASACPATCT 1284

Query: 469  DFLGPQ 486
            D   PQ
Sbjct: 1285 DVSAPQ 1290