DK955960
Clone id TST39A01NGRL0024_H21
Library
Length 615
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_H21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CTCACACACACACACACACACACGAGTTGGGCGCTTGCGCGCGCGTGTACAACGAACTCG
AACTCTGATCTTGCCCGGCAGGTGCCAGAGTTTTCTGTTATATAAACCGGAAGAGCGTCA
GCGTCGCTAGTCTGCACAGCGAATGGGGCTCTTGGGGCTTGCAAAGAAGATGCCAGCCTC
ACCTCCAGCATGCTTGCCTGCGCTTTGCCCTCCCCCTTCCTGCTTCATTCCTTCAAGCTC
TTGTCTCAGAAGAAGAGCTTGCTTTCCCGCTCCCTTAGCTGGAGGAGCTAAAGGGAGAGA
TTGGATGCAGGCTGCAGATCAGTGGCAATCCAAACGGCTCTTGATTGTGATGAACGCTGT
CGAAAATCAAGGCAATGTTGCCACGGAAGATATGAGTGACAATAAGATTTTACCGTATTG
CAGCATCGACAAGAAAGCAGATAAGCGCTCTTTAGGGGAACTTGAGGCAGAGTTTCTGGA
AGCTCTCCAGTCATTCTACTATGACAAGAAACCTATGATGTCCAATGAAGAGTTTGACAA
CCTCAAGGAGGAACTCATCTGGGAGGGCAGCAGTGTGGTTATCTTAAGTGCTGATGAGCA
GAGGTTTATGGAAAC
■■Homology search results ■■ -
sp_hit_id Q8GYC7
Definition sp|Q8GYC7|PGL1B_ARATH PGR5-like protein 1B, chloroplastic OS=Arabidopsis thaliana
Align length 92
Score (bit) 96.7
E-value 9.0e-20
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955960|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_H21, 5'
(615 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8GYC7|PGL1B_ARATH PGR5-like protein 1B, chloroplastic OS=Ara... 97 9e-20
sp|Q8H112|PGL1A_ARATH PGR5-like protein 1A, chloroplastic OS=Ara... 95 2e-19
sp|Q99N34|DFFB_RAT DNA fragmentation factor subunit beta OS=Ratt... 33 0.89
sp|O54788|DFFB_MOUSE DNA fragmentation factor subunit beta OS=Mu... 33 1.2
sp|Q9V333|JHD3A_DROME Probable JmjC domain-containing histone de... 31 5.8
sp|Q4FNM6|PNP_PELUB Polyribonucleotide nucleotidyltransferase OS... 30 9.8
sp|Q1KKZ5|HXABB_FUGRU Homeobox protein Hox-A11b OS=Fugu rubripes... 30 9.8
sp|Q4FPL3|DNLJ_PELUB DNA ligase OS=Pelagibacter ubique GN=ligA P... 30 9.8
sp|Q58CZ0|DFFB_BOVIN DNA fragmentation factor subunit beta OS=Bo... 30 9.8

>sp|Q8GYC7|PGL1B_ARATH PGR5-like protein 1B, chloroplastic
OS=Arabidopsis thaliana GN=PGRL1B PE=1 SV=1
Length = 313

Score = 96.7 bits (239), Expect = 9e-20
Identities = 51/92 (55%), Positives = 66/92 (71%)
Frame = +2

Query: 338 LLIVMNAVENQGNVATEDMSDNKILPYCSIDKKADKRSXXXXXXXXXXXXQSFYYDKKPM 517
LL + + + G V E++ D+KILPYCSI+K +KR+ QSFYY+ K +
Sbjct: 45 LLPLKASTDQSGQVGGEEV-DSKILPYCSINKN-EKRTIGEMEQEFLQAMQSFYYEGKAI 102

Query: 518 MSNEEFDNLKEELIWEGSSVVILSADEQRFME 613
MSNEEFDNLKEEL+WEGSSVV+LS+DEQRF+E
Sbjct: 103 MSNEEFDNLKEELMWEGSSVVMLSSDEQRFLE 134


>sp|Q8H112|PGL1A_ARATH PGR5-like protein 1A, chloroplastic
OS=Arabidopsis thaliana GN=PGRL1A PE=1 SV=1
Length = 324

Score = 95.1 bits (235), Expect = 2e-19
Identities = 49/91 (53%), Positives = 61/91 (67%)
Frame = +2

Query: 341 LIVMNAVENQGNVATEDMSDNKILPYCSIDKKADKRSXXXXXXXXXXXXQSFYYDKKPMM 520
L+ A Q D D+ +LPYCSI+K A+K++ QSFYYD K +M
Sbjct: 56 LLPAKATTEQSGPVGGDNVDSNVLPYCSINK-AEKKTIGEMEQEFLQALQSFYYDGKAIM 114

Query: 521 SNEEFDNLKEELIWEGSSVVILSADEQRFME 613
SNEEFDNLKEEL+WEGSSVV+LS+DEQRF+E
Sbjct: 115 SNEEFDNLKEELMWEGSSVVMLSSDEQRFLE 145


>sp|Q99N34|DFFB_RAT DNA fragmentation factor subunit beta OS=Rattus
norvegicus GN=Dffb PE=2 SV=1
Length = 349

Score = 33.5 bits (75), Expect = 0.89
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3

Query: 111 KSVSVASLHSEWGSWGLQRRCQPHLQHACLRFALPLPASFL 233
K V + +LHS R CQ L+ C+RF LP+P S L
Sbjct: 9 KCVKLRALHSSCKFGVAARSCQELLRKGCIRFQLPVPGSRL 49


>sp|O54788|DFFB_MOUSE DNA fragmentation factor subunit beta OS=Mus
musculus GN=Dffb PE=1 SV=1
Length = 344

Score = 33.1 bits (74), Expect = 1.2
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3

Query: 111 KSVSVASLHSEWGSWGLQRRCQPHLQHACLRFALPLPASFL 233
K V + +LHS R CQ L+ C+RF LP+P S L
Sbjct: 9 KCVKLRALHSACKFGVAARSCQELLRKGCVRFQLPMPGSRL 49


>sp|Q9V333|JHD3A_DROME Probable JmjC domain-containing histone
demethylation protein 3A OS=Drosophila melanogaster
GN=CG15835 PE=1 SV=1
Length = 495

Score = 30.8 bits (68), Expect = 5.8
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -3

Query: 187 WR*GWHLLCKPQEPHSLCRLATLTLFRFI*QKTLAPAGQDQSSSSLYTRAQAPNSC 20
W G + C P+EP +C A TL + Q+ L A ++ S + A N C
Sbjct: 339 WLKGQDMGCHPEEPGKICAAAPPTLNEYEKQENLRAAKSEEESPQKRGCSLAGNGC 394


>sp|Q4FNM6|PNP_PELUB Polyribonucleotide nucleotidyltransferase
OS=Pelagibacter ubique GN=pnp PE=3 SV=1
Length = 690

Score = 30.0 bits (66), Expect = 9.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3

Query: 583 DNHTAALPDEFLLEVVKLFIGHHRFLVIVE*LESFQKLCLK 461
++ T+ L +E +L+ VK GH F+ ++E +E K C K
Sbjct: 190 ESETSGLTEEVMLDAVKF--GHEGFVPVIEMIEELAKECRK 228


>sp|Q1KKZ5|HXABB_FUGRU Homeobox protein Hox-A11b OS=Fugu rubripes
GN=hoxa11b PE=3 SV=1
Length = 284

Score = 30.0 bits (66), Expect = 9.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2

Query: 173 ASSLQAPRAPFAVQTSDADALPVYITENSGTC 78
AS++ P + V +D LP Y+T+N TC
Sbjct: 9 ASNMYLPSCTYYVSGADFSGLPHYLTQNQSTC 40


>sp|Q4FPL3|DNLJ_PELUB DNA ligase OS=Pelagibacter ubique GN=ligA PE=3
SV=1
Length = 676

Score = 30.0 bits (66), Expect = 9.8
Identities = 13/22 (59%), Positives = 20/22 (90%), Gaps = 1/22 (4%)
Frame = +2

Query: 497 YYDK-KPMMSNEEFDNLKEELI 559
YYDK KP++S++EFD LK+++I
Sbjct: 24 YYDKNKPIVSDQEFDLLKKDII 45


>sp|Q58CZ0|DFFB_BOVIN DNA fragmentation factor subunit beta OS=Bos
taurus GN=DFFB PE=2 SV=1
Length = 341

Score = 30.0 bits (66), Expect = 9.8
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3

Query: 111 KSVSVASLHSEWGSWGLQRRCQPHLQHACLRFALPLPASFL 233
K+ + SLHSE R C+ L+ C R LP+P S L
Sbjct: 9 KTFKLRSLHSEKKFGVAGRSCEEVLRKGCQRLQLPIPGSRL 49


tr_hit_id A9NWM0
Definition tr|A9NWM0|A9NWM0_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 113
Score (bit) 110.0
E-value 5.0e-23
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955960|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_H21, 5'
(615 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NWM0|A9NWM0_PICSI Putative uncharacterized protein OS=Picea... 110 5e-23
tr|A7QKC6|A7QKC6_VITVI Chromosome chr2 scaffold_112, whole genom... 107 7e-22
tr|Q84M73|Q84M73_ORYSJ Os03g0857400 protein OS=Oryza sativa subs... 96 2e-18
tr|B8ANS3|B8ANS3_ORYSI Putative uncharacterized protein OS=Oryza... 96 2e-18
tr|A3APX8|A3APX8_ORYSJ Putative uncharacterized protein OS=Oryza... 96 2e-18
tr|A9T0F2|A9T0F2_PHYPA Predicted protein OS=Physcomitrella paten... 95 3e-18
tr|A9PGK5|A9PGK5_POPTR Putative uncharacterized protein OS=Popul... 95 3e-18
tr|B4FY30|B4FY30_MAIZE Putative uncharacterized protein OS=Zea m... 94 5e-18
tr|B4FTA7|B4FTA7_MAIZE Putative uncharacterized protein OS=Zea m... 94 5e-18
tr|B8B8V8|B8B8V8_ORYSI Putative uncharacterized protein OS=Oryza... 94 8e-18
tr|Q7F1E4|Q7F1E4_ORYSJ Os08g0526300 protein OS=Oryza sativa subs... 92 2e-17
tr|Q6YS51|Q6YS51_ORYSJ Os08g0310500 protein OS=Oryza sativa subs... 77 6e-13
tr|A8ITK6|A8ITK6_CHLRE Predicted protein OS=Chlamydomonas reinha... 75 3e-12
tr|A2Y1Z1|A2Y1Z1_ORYSI Putative uncharacterized protein OS=Oryza... 72 3e-11
tr|A3BV17|A3BV17_ORYSJ Putative uncharacterized protein OS=Oryza... 65 4e-09
tr|B8CCJ2|B8CCJ2_THAPS Predicted protein OS=Thalassiosira pseudo... 45 0.003
tr|B7FRN6|B7FRN6_PHATR Predicted protein OS=Phaeodactylum tricor... 44 0.007
tr|B8BZQ3|B8BZQ3_THAPS Putative uncharacterized protein OS=Thala... 42 0.022
tr|Q4TF20|Q4TF20_TETNG Chromosome undetermined SCAF4908, whole g... 30 6.6
tr|B4KAR3|B4KAR3_DROMO GI10734 OS=Drosophila mojavensis GN=GI107... 30 7.4
tr|Q00ZC0|Q00ZC0_OSTTA Putative heme activated protein (ISS) OS=... 34 7.7

>tr|A9NWM0|A9NWM0_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 350

Score = 110 bits (276), Expect = 5e-23
Identities = 59/113 (52%), Positives = 75/113 (66%), Gaps = 13/113 (11%)
Frame = +2

Query: 314 ADQWQSKR-----------LLIVMNAVENQ--GNVATEDMSDNKILPYCSIDKKADKRSX 454
+++WQS+ LIVM A E Q G V E++ DN ILPYCSIDKK++KR+
Sbjct: 42 SEEWQSRSGRCYTTTTKRPPLIVMQATEQQQQGQVKEEEIVDNNILPYCSIDKKSEKRTL 101

Query: 455 XXXXXXXXXXXQSFYYDKKPMMSNEEFDNLKEELIWEGSSVVILSADEQRFME 613
QSFY++KK M+NEEFD+LKEEL+WEGSSVV+LS DEQ+FME
Sbjct: 102 GELEQDFLEALQSFYFEKKSTMTNEEFDHLKEELMWEGSSVVMLSPDEQKFME 154


>tr|A7QKC6|A7QKC6_VITVI Chromosome chr2 scaffold_112, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00001064001
PE=4 SV=1
Length = 326

Score = 107 bits (266), Expect = 7e-22
Identities = 56/97 (57%), Positives = 70/97 (72%), Gaps = 2/97 (2%)
Frame = +2

Query: 329 SKRLLIVMN--AVENQGNVATEDMSDNKILPYCSIDKKADKRSXXXXXXXXXXXXQSFYY 502
S+RL I+ + QG V +D+ D+KILPYCSIDKK +KRS QSFYY
Sbjct: 52 SRRLFIISPKATADQQGQVQGDDVVDSKILPYCSIDKK-EKRSIGEMEQDFLQALQSFYY 110

Query: 503 DKKPMMSNEEFDNLKEELIWEGSSVVILSADEQRFME 613
+ K +MSNEEFDNLKEEL+WEGSSVV+LS+DEQ+F+E
Sbjct: 111 EGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLE 147


>tr|Q84M73|Q84M73_ORYSJ Os03g0857400 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0059G06.17 PE=2 SV=1
Length = 324

Score = 95.9 bits (237), Expect = 2e-18
Identities = 58/125 (46%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Frame = +2

Query: 248 RRRACFPAPLAGGAKGRDWMQAADQWQSKRLLIVMNAVENQGNVATEDMSDNKILPYCSI 427
RR +C A G + R + A DQ Q QG +++ D+ +L YCSI
Sbjct: 37 RRSSCALATSTRGRRLR--LGATDQQQQ------------QGKQDGDEVVDSNVLQYCSI 82

Query: 428 D---KKADKRSXXXXXXXXXXXXQSFYYDKKPMMSNEEFDNLKEELIWEGSSVVILSADE 598
D KKA+KRS Q+FYYD+K +MSNEEFDNLKEEL+WEGSSVV+LS DE
Sbjct: 83 DGKGKKAEKRSLGEMEQEFLQALQAFYYDQKAIMSNEEFDNLKEELMWEGSSVVMLSPDE 142

Query: 599 QRFME 613
QR +E
Sbjct: 143 QRLLE 147


>tr|B8ANS3|B8ANS3_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_14406 PE=4 SV=1
Length = 322

Score = 95.9 bits (237), Expect = 2e-18
Identities = 58/125 (46%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Frame = +2

Query: 248 RRRACFPAPLAGGAKGRDWMQAADQWQSKRLLIVMNAVENQGNVATEDMSDNKILPYCSI 427
RR +C A G + R + A DQ Q QG +++ D+ +L YCSI
Sbjct: 35 RRSSCALATSTRGRRLR--LGATDQQQQ------------QGKQDGDEVVDSNVLQYCSI 80

Query: 428 D---KKADKRSXXXXXXXXXXXXQSFYYDKKPMMSNEEFDNLKEELIWEGSSVVILSADE 598
D KKA+KRS Q+FYYD+K +MSNEEFDNLKEEL+WEGSSVV+LS DE
Sbjct: 81 DGKGKKAEKRSLGEMEQEFLQALQAFYYDQKAIMSNEEFDNLKEELMWEGSSVVMLSPDE 140

Query: 599 QRFME 613
QR +E
Sbjct: 141 QRLLE 145


>tr|A3APX8|A3APX8_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_012850 PE=4 SV=1
Length = 299

Score = 95.9 bits (237), Expect = 2e-18
Identities = 58/125 (46%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Frame = +2

Query: 248 RRRACFPAPLAGGAKGRDWMQAADQWQSKRLLIVMNAVENQGNVATEDMSDNKILPYCSI 427
RR +C A G + R + A DQ Q QG +++ D+ +L YCSI
Sbjct: 35 RRSSCALATSTRGRRLR--LGATDQQQQ------------QGKQDGDEVVDSNVLQYCSI 80

Query: 428 D---KKADKRSXXXXXXXXXXXXQSFYYDKKPMMSNEEFDNLKEELIWEGSSVVILSADE 598
D KKA+KRS Q+FYYD+K +MSNEEFDNLKEEL+WEGSSVV+LS DE
Sbjct: 81 DGKGKKAEKRSLGEMEQEFLQALQAFYYDQKAIMSNEEFDNLKEELMWEGSSVVMLSPDE 140

Query: 599 QRFME 613
QR +E
Sbjct: 141 QRLLE 145


>tr|A9T0F2|A9T0F2_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_138266 PE=4 SV=1
Length = 287

Score = 95.1 bits (235), Expect = 3e-18
Identities = 48/88 (54%), Positives = 60/88 (68%)
Frame = +2

Query: 350 MNAVENQGNVATEDMSDNKILPYCSIDKKADKRSXXXXXXXXXXXXQSFYYDKKPMMSNE 529
M A N + ++ D+K+LPYC I+KK K++ QSFY+D KP+MSNE
Sbjct: 1 MQASSNGNDPGSDSEVDDKVLPYCDINKK-QKKTLGEMEQDFLEALQSFYFDSKPIMSNE 59

Query: 530 EFDNLKEELIWEGSSVVILSADEQRFME 613
EFD LKEEL WEGSSVVILS+DEQRF+E
Sbjct: 60 EFDLLKEELTWEGSSVVILSSDEQRFLE 87


>tr|A9PGK5|A9PGK5_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 323

Score = 95.1 bits (235), Expect = 3e-18
Identities = 48/86 (55%), Positives = 60/86 (69%)
Frame = +2

Query: 356 AVENQGNVATEDMSDNKILPYCSIDKKADKRSXXXXXXXXXXXXQSFYYDKKPMMSNEEF 535
A + V +DM D KIL YCSIDKK K+S Q+FYY+ K +MSNEEF
Sbjct: 60 ADQQTDQVQEDDMDDGKILQYCSIDKKG-KKSLGEMEQDFLQALQAFYYEGKAIMSNEEF 118

Query: 536 DNLKEELIWEGSSVVILSADEQRFME 613
DNLKEEL+W+GSSVV+LS+DEQ+F+E
Sbjct: 119 DNLKEELMWQGSSVVMLSSDEQKFLE 144


>tr|B4FY30|B4FY30_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 157

Score = 94.4 bits (233), Expect = 5e-18
Identities = 48/90 (53%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Frame = +2

Query: 350 MNAVENQGNVATED--MSDNKILPYCSIDKKADKRSXXXXXXXXXXXXQSFYYDKKPMMS 523
+ A E QG V +D + D ILPYCSID+K K++ Q+FYYD+K +MS
Sbjct: 56 LRATEQQGQVQEQDDEVVDRNILPYCSIDRK-QKKTLGEMEQEFLQALQAFYYDQKAIMS 114

Query: 524 NEEFDNLKEELIWEGSSVVILSADEQRFME 613
NEEFDNLKEEL+WEGSSVV+L+ DEQ+ +E
Sbjct: 115 NEEFDNLKEELMWEGSSVVMLNEDEQKLLE 144


>tr|B4FTA7|B4FTA7_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 322

Score = 94.4 bits (233), Expect = 5e-18
Identities = 48/90 (53%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Frame = +2

Query: 350 MNAVENQGNVATED--MSDNKILPYCSIDKKADKRSXXXXXXXXXXXXQSFYYDKKPMMS 523
+ A E QG V +D + D ILPYCSID+K K++ Q+FYYD+K +MS
Sbjct: 56 LRATEQQGQVQEQDDEVVDRNILPYCSIDRK-QKKTLGEMEQEFLQALQAFYYDQKAIMS 114

Query: 524 NEEFDNLKEELIWEGSSVVILSADEQRFME 613
NEEFDNLKEEL+WEGSSVV+L+ DEQ+ +E
Sbjct: 115 NEEFDNLKEELMWEGSSVVMLNEDEQKLLE 144


>tr|B8B8V8|B8B8V8_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_29970 PE=4 SV=1
Length = 326

Score = 93.6 bits (231), Expect = 8e-18
Identities = 52/102 (50%), Positives = 67/102 (65%)
Frame = +2

Query: 308 QAADQWQSKRLLIVMNAVENQGNVATEDMSDNKILPYCSIDKKADKRSXXXXXXXXXXXX 487
QAADQ Q ++ EN+ V D+ +LPYCSI++K +K++
Sbjct: 54 QAADQQQQQQ-------EENEDGVV-----DSNVLPYCSINRK-EKKTIGEMEQEFLQAL 100

Query: 488 QSFYYDKKPMMSNEEFDNLKEELIWEGSSVVILSADEQRFME 613
Q+FYYDKK +MSNEEFDNLKEEL+WEGSSVV+LS DEQR +E
Sbjct: 101 QAFYYDKKAVMSNEEFDNLKEELMWEGSSVVMLSPDEQRLLE 142