DK955973 [AcEST]

DK955973
Clone id	TST39A01NGRL0024_I10
Library	TST39
Length	557
Definition	Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_I10. 5' end sequence.
Accession	DK955973
Tissue type	prothallia with plantlets
Developmental stage	gametophytes with sporophytes
Contig ID	-
Sequence	GGCGTTCTCCTCTTCCTCCTGCAATCCTTCCACTAGTCTGCAGCCCAAGAAAGAAAGAAC GAGAGAAAGAGTGGGTCCTCCTCCTTCCCCTTTGTCTCTGCGGTAGCAGCCGAGCTCTCC TCCTCGGGCAAAAGGACGCTCCCAAAACCTTATCCCTAGCTTTTGAAGCCGTTACTCTTC CGTTTGGTCTGTTTCCATGTCTGATGATGAGCTTCATTCATTTATACAAAGGCATTGTTT CTTGAACCGTGTGTGTGTGCATGATTGCGTATCTGCCTGCCTTCCTGTGAGCTGCAAATC TTAGGGTTTGTTAAGACTCTCTTTGTTATCTTGCCTCGTACGTTCTAAGTTTTAAACAAG GCCGTTGCCCGATCTTGCCTTGAGAGTCTGCTCAGATGGCCTTTTAACGTTTTTTCAAAG CCATGTCTCACAGCGTATGCTAACCTTGTGTCTGTCCTGTTTCCTGCCTTGTGAAGAGCA CTAGGGTTTCTCGTTTCCTAATGGCCTCTTCAACAAACCCCCGTTTACTCTTTCAGGTTT CTAAGAGCTTGCCCTAT
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	A1WD47
Definition	sp\|A1WD47\|MNMA_ACISJ tRNA-specific 2-thiouridylase mnmA OS=Acidovorax sp. (strain JS42)
Align length	48
Score (bit)	32.0
E-value	2.1
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK955973\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_I10, 5' (557 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|A1WD47\|MNMA_ACISJ tRNA-specific 2-thiouridylase mnmA OS=Acido... 32 2.1 sp\|Q86UQ4\|ABCAD_HUMAN ATP-binding cassette sub-family A member 1... 32 2.7 sp\|Q5SSE9\|ABCAD_MOUSE ATP-binding cassette sub-family A member 1... 30 6.1 >sp\|A1WD47\|MNMA_ACISJ tRNA-specific 2-thiouridylase mnmA OS=Acidovorax sp. (strain JS42) GN=mnmA PE=3 SV=1 Length = 379 Score = 32.0 bits (71), Expect = 2.1 Identities = 20/48 (41%), Positives = 27/48 (56%) Frame = -1 Query: 494 TRNPSALHKAGNRTDTRLAYAVRHGFEKTLKGHLSRLSRQDRATALFK 351 T NP L A + L +A+R G EK GH +R+ RQ+ AT LF+ Sbjct: 93 TPNPDVLCNAEIKFKAFLDHAMRLGAEKIATGHYARV-RQNPATGLFE 139 >sp\|Q86UQ4\|ABCAD_HUMAN ATP-binding cassette sub-family A member 13 OS=Homo sapiens GN=ABCA13 PE=2 SV=2 Length = 5058 Score = 31.6 bits (70), Expect = 2.7 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +1 Query: 298 ILGFVKTLFVILPRTFVLNKAVARSCLESLLRWPFNVFSKPCL 429 I G L I+PR +++KA + +L+W F +F + CL Sbjct: 4577 IFGLCTMLITIMPRLLAIISKAKNLQNIYDVLKWVFTIFPQFCL 4620 >sp\|Q5SSE9\|ABCAD_MOUSE ATP-binding cassette sub-family A member 13 OS=Mus musculus GN=Abca13 PE=2 SV=1 Length = 5034 Score = 30.4 bits (67), Expect = 6.1 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = +1 Query: 298 ILGFVKTLFVILPRTFVLNKAVARSCLESLLRWPFNVFSKPCL 429 I G L +PR +++KA + ++L+W F +F + CL Sbjct: 4551 IFGLCTMLMTTMPRLLAIISKAQNLQKIYNVLKWAFTIFPQFCL 4594
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	-
Definition	No hits.
Align length	-
Score (bit)	-
E-value	-
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK955973\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_I10, 5' (557 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done *** No hits found ****