DK955980
Clone id TST39A01NGRL0024_I17
Library
Length 600
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_I17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
AGCTCTCGGAGCGATTTTCTGTTGGGCATATAGACCCCCTCGCTGCTCGATTCTGAGAGC
TTCTGAGCTTTCTCTCGAACGCCCTAGCTCTGTGCTGCTTGCACACAGAGAAGGGCAATT
TTTTTTCCCGAGAGAAGGAGAAAGAGAGAGGAGAGAAGAAGAGGGAGCGCACAGAGTTCA
AGGGCTTTCAGCATCGCGGTAGAGAGAGAAAGAGAACAAACAGAAAGAGAATGAGAAGAG
ATATATAGATAGAGAGCATCAATTCAAGGGTTTTAGCGTTTTCCCTAGAGCTATAGCACC
TCTTCAGCACGCCCTACTAAAAGGATTGCAGAGCAGTGAAGTTTCATTTGGGCTCATGAG
GTCCTCCATGGAGCTCTTATTGAGCAACTTCGCATTGGGTCTTTCAGATCCATGTGCATT
TGTGATAGCTGTTGGCAAGTGATTGGTGCTCAGCGGCTTTTGACTTGATCAGCATGATCA
GGGAGGGTTAGGTGGTTTCGGAAACACCAAAAACAAATGTATTATGTAGGCGTTTACTGA
AAATCAGGCTTTTGAGGATCTGACATGGGCGACAGTGACACCGCCTTGAGGAGGGTAAAT
■■Homology search results ■■ -
sp_hit_id P26663
Definition sp|P26663|POLG_HCVBK Genome polyprotein OS=Hepatitis C virus genotype 1b (isolate BK)
Align length 18
Score (bit) 30.8
E-value 5.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955980|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_I17, 5'
(600 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P26663|POLG_HCVBK Genome polyprotein OS=Hepatitis C virus gen... 31 5.5
sp|Q06277|IBPA_HAES2 High molecular weight immunoglobulin-bindin... 30 7.2

>sp|P26663|POLG_HCVBK Genome polyprotein OS=Hepatitis C virus
genotype 1b (isolate BK) PE=1 SV=3
Length = 3010

Score = 30.8 bits (68), Expect = 5.5
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2

Query: 17 FCWAYRPPRCSILRASEL 70
+CW Y PP+C+I+ ASE+
Sbjct: 485 YCWHYPPPQCTIVPASEV 502


>sp|Q06277|IBPA_HAES2 High molecular weight immunoglobulin-binding
protein ibpA OS=Haemophilus somnus (strain 2336) GN=ibpA
PE=1 SV=2
Length = 4095

Score = 30.4 bits (67), Expect = 7.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1

Query: 435 PTAITNAHGSERPNAKLLNKSSMEDLMSPNETSLLCNPFSR 313
P A NA E P K+L++S ++DLM+ + L N + +
Sbjct: 1721 PDATDNAAQKEEPKFKVLSQSEVDDLMTEKSANDLFNKYKK 1761


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955980|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_I17, 5'
(600 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******