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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955991
Clone id TST39A01NGRL0024_J04
Library
Length 589
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_J04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TTCGCGTGTGTAGGCCACAGAGGCACGCCATCGCCGCGAGCTGGTTTGGGGTCTCTGACG
ATGGCTTGCAGCAGCGGCAACAGAGCCATGCAGGCGCCCTCTTCTCTCTCCTCCTGCGAG
GCCTCCTCTCTGCGTGGCCTCTCTTTGGCTCCTGCCTTGAGGCCCCGAGCTCGATCGCCG
CCTTCTTCCTCTGCTCCTCATCACACTCTGAAGGTCATGGCTATGGCGCCCAAAAACAAG
GTGAATGCATATGATTCTGATTGGAACAAAACATGGTTCGGAGCCGGGATGTTTGCCGAA
AATACAGAGGCTGCACCTATGAACATTGTGCAGAAGCTGGAGAAGAAGAAGCTTCTTAGC
CAAGTAGAGAAGGCAGGGCTTCTTTCAAAGGCAGAGAGTGCTGGCCTCACTCTCTCCTCA
ATAGAGAAGATGGGTTTGTTGTCGAAGGCCGAGGATCTTGGTCTGTTGAGCTTTGCAGAG
AGCTTCGCAACATCATCACCTGCACTTCTCGCATCTCTGTCATTGCCTCTCATTGTCCTA
TCTGTTGTGACATTGGTTGTAGTACCCGATGATAGCACGGCTCTTGTTG
■■Homology search results ■■ -
sp_hit_id O74324
Definition sp|O74324|YH04_SCHPO Uncharacterized protein C1685.04 OS=Schizosaccharomyces pombe
Align length 54
Score (bit) 32.0
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955991|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_J04, 5'
         (589 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O74324|YH04_SCHPO Uncharacterized protein C1685.04 OS=Schizos...    32   2.4  
sp|O66976|HISX_AQUAE Histidinol dehydrogenase OS=Aquifex aeolicu...    32   3.1  
sp|Q9IBG7|CRIM2_XENLA Cysteine-rich motor neuron 2 protein OS=Xe...    31   4.0  
sp|A1T041|RL9_PSYIN 50S ribosomal protein L9 OS=Psychromonas ing...    31   5.3  
sp|Q66GS9|CP135_HUMAN Centrosomal protein of 135 kDa OS=Homo sap...    31   5.3  
sp|Q9LS42|CASP_ARATH Protein CASP OS=Arabidopsis thaliana GN=CAS...    31   5.3  

>sp|O74324|YH04_SCHPO Uncharacterized protein C1685.04
           OS=Schizosaccharomyces pombe GN=SPBC1685.04 PE=2 SV=1
          Length = 325

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 301 NTEAAPMNIVQKLEKKKLLSQVEKAGLLSKAESAGLTLSSIEK-MGLLSKAEDL 459
           NT    +     LEKKK LS  ++   L +   A   +SS+EK M +L K EDL
Sbjct: 167 NTLVKRLQTYDNLEKKKALSMEDRLLTLQEQYDAHANVSSLEKRMEVLKKREDL 220


>sp|O66976|HISX_AQUAE Histidinol dehydrogenase OS=Aquifex aeolicus
           GN=hisD PE=3 SV=1
          Length = 426

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
 Frame = +1

Query: 217 MAMAPKNKVNAYDSDWNKTWFGAGMF--AENTEAAPMNIVQKLEK--KKLLSQVEKAGLL 384
           M   P   +   D   N TW  A M   AE+ E A   ++   E+   K+  +VE+  LL
Sbjct: 228 MIAGPSEVLVIADERANPTWVAADMLSQAEHDELAASILLTPSEELANKVKEEVER--LL 285

Query: 385 SKAESAGLTLSSIEKMGLLSKAEDL 459
           S+ E   +   S+EK G +   +DL
Sbjct: 286 SQLERKEIAQKSLEKFGTIFLVKDL 310


>sp|Q9IBG7|CRIM2_XENLA Cysteine-rich motor neuron 2 protein OS=Xenopus
            laevis GN=crim2 PE=2 SV=1
          Length = 2327

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 465  VELCRELRNIITCTSRISVIASHCPICCD 551
            V  C +L+ I +CT++I++    CP+C D
Sbjct: 1704 VTTCSKLQCITSCTNQITIPGECCPVCAD 1732


>sp|A1T041|RL9_PSYIN 50S ribosomal protein L9 OS=Psychromonas
           ingrahamii (strain 37) GN=rplI PE=3 SV=1
          Length = 150

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +1

Query: 268 KTWFGAGMFAENTEAAPMNI--VQKLEKKKLLSQVEKAGLLSKAESAGLTLSSIEKMGLL 441
           K+ +         +A P N   ++  E +++  + ++A  L+ AE  G  L+++E + + 
Sbjct: 22  KSGYARNFLFPQQKAVPANKANLEAFETRRVELEAKQAANLAAAEKRGAALAALEAVVIA 81

Query: 442 SKAEDLGLL 468
           SKA D+G L
Sbjct: 82  SKAGDVGKL 90


>sp|Q66GS9|CP135_HUMAN Centrosomal protein of 135 kDa OS=Homo
           sapiens GN=CEP135 PE=1 SV=1
          Length = 1140

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +1

Query: 298 ENTEA-APMNIVQKLEKKKLLSQVEKAGLLSKAESAGLTLSSIEKMGLLSKAE 453
           E+T+  AP NIV  +EK+K L+  +   ++++ E+    L  IE++ L  K+E
Sbjct: 553 ESTQTTAPHNIVSLMEKEKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSE 605


>sp|Q9LS42|CASP_ARATH Protein CASP OS=Arabidopsis thaliana GN=CASP
           PE=1 SV=2
          Length = 689

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +1

Query: 208 LKVMAMAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQV-EKAGLL 384
           +K++     N + A   DW+    G  M    +     N   + E  +L  Q+ EKA LL
Sbjct: 380 VKILQAVGYNSIEA--EDWDAATTGEEMSKMESLLLDKNRKMEHEVTQLKVQLSEKASLL 437

Query: 385 SKAESAG--LTLSSIEKMGLLSKAED 456
            KAE+ G  LT    E+  L+ K ED
Sbjct: 438 EKAEAKGEELTAKVNEQQRLIQKLED 463
tr_hit_id A9TMU4
Definition tr|A9TMU4|A9TMU4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 88
Score (bit) 143.0
E-value 6.0e-33
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955991|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_J04, 5'
         (589 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TMU4|A9TMU4_PHYPA Predicted protein OS=Physcomitrella paten...   143   6e-33
tr|A9TJ04|A9TJ04_PHYPA Predicted protein OS=Physcomitrella paten...   140   4e-32
tr|A9S8Z7|A9S8Z7_PHYPA Predicted protein (Fragment) OS=Physcomit...   131   2e-29
tr|B6TFL9|B6TFL9_MAIZE Putative uncharacterized protein OS=Zea m...   128   3e-28
tr|A9NZ32|A9NZ32_PICSI Putative uncharacterized protein OS=Picea...   127   4e-28
tr|B4FRC0|B4FRC0_MAIZE Putative uncharacterized protein OS=Zea m...   123   7e-27
tr|Q0JLN9|Q0JLN9_ORYSJ cDNA clone:J023103B06, full insert sequen...   122   2e-26
tr|A2WRV9|A2WRV9_ORYSI Putative uncharacterized protein OS=Oryza...   122   2e-26
tr|B7FFF0|B7FFF0_MEDTR Putative uncharacterized protein OS=Medic...   121   3e-26
tr|A5C347|A5C347_VITVI Putative uncharacterized protein (Chromos...   120   7e-26
tr|A9PJV1|A9PJV1_POPJC Putative uncharacterized protein OS=Popul...   118   3e-25
tr|Q9SSF7|Q9SSF7_ARATH F25A4.30 protein OS=Arabidopsis thaliana ...   117   5e-25
tr|Q94F10|Q94F10_ARATH Putative uncharacterized protein (Putativ...   117   5e-25
tr|B7FKD0|B7FKD0_MEDTR Putative uncharacterized protein OS=Medic...   115   2e-24
tr|A9PGF4|A9PGF4_POPTR Putative uncharacterized protein OS=Popul...    67   1e-09
tr|A3CIP9|A3CIP9_ORYSJ Putative uncharacterized protein OS=Oryza...    65   2e-09
tr|A7QI04|A7QI04_VITVI Chromosome chr17 scaffold_101, whole geno...    65   3e-09
tr|Q2QN86|Q2QN86_ORYSJ Os12g0575000 protein OS=Oryza sativa subs...    65   4e-09
tr|A9NMI1|A9NMI1_PICSI Putative uncharacterized protein OS=Picea...    65   4e-09
tr|B4FV96|B4FV96_MAIZE Putative uncharacterized protein OS=Zea m...    64   6e-09
tr|B8BMN2|B8BMN2_ORYSI Putative uncharacterized protein OS=Oryza...    64   8e-09
tr|Q9SD79|Q9SD79_ARATH Putative uncharacterized protein F13G24.2...    61   5e-08
tr|Q8VYV1|Q8VYV1_ARATH AT5g08050/F13G24_250 OS=Arabidopsis thali...    61   5e-08
tr|A9S2G0|A9S2G0_PHYPA Predicted protein (Fragment) OS=Physcomit...    59   2e-07
tr|Q2QN87|Q2QN87_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    57   8e-07
tr|Q2R4U2|Q2R4U2_ORYSJ Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A2ZE10|A2ZE10_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|B7G128|B7G128_PHATR Predicted protein OS=Phaeodactylum tricor...    44   0.009
tr|B8LBT9|B8LBT9_THAPS Predicted protein OS=Thalassiosira pseudo...    43   0.015
tr|A6R060|A6R060_AJECN Glycyl-tRNA synthetase 1 OS=Ajellomyces c...    35   0.48 

>tr|A9TMU4|A9TMU4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_147884 PE=4 SV=1
          Length = 152

 Score =  143 bits (361), Expect = 6e-33
 Identities = 71/88 (80%), Positives = 78/88 (88%)
 Frame = +1

Query: 223 MAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLSKAESA 402
           MAPK KVNAYD  W+K WFGAG+FAENTE  P+NIV+KLEKKKLLSQVEKAGLLSKAES 
Sbjct: 1   MAPKKKVNAYDEGWSKQWFGAGIFAENTETEPVNIVKKLEKKKLLSQVEKAGLLSKAESL 60

Query: 403 GLTLSSIEKMGLLSKAEDLGLLSFAESF 486
           G++LS IEK+GLLSKAEDLGLLS AE F
Sbjct: 61  GVSLSQIEKLGLLSKAEDLGLLSLAEKF 88


>tr|A9TJ04|A9TJ04_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_146224 PE=4 SV=1
          Length = 165

 Score =  140 bits (354), Expect = 4e-32
 Identities = 70/92 (76%), Positives = 81/92 (88%)
 Frame = +1

Query: 211 KVMAMAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLSK 390
           +V AMAPK KVNAYD  W+K WFGAG+FAENTE   ++IV+KLEKKKLLSQVEKAGLLSK
Sbjct: 10  QVRAMAPKKKVNAYDDAWSKQWFGAGLFAENTETESVDIVKKLEKKKLLSQVEKAGLLSK 69

Query: 391 AESAGLTLSSIEKMGLLSKAEDLGLLSFAESF 486
           AES G++LS IEK+GLLSKAEDLGLL+ AE+F
Sbjct: 70  AESLGVSLSQIEKLGLLSKAEDLGLLTLAENF 101


>tr|A9S8Z7|A9S8Z7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_48633 PE=4 SV=1
          Length = 117

 Score =  131 bits (330), Expect = 2e-29
 Identities = 68/92 (73%), Positives = 79/92 (85%)
 Frame = +1

Query: 211 KVMAMAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLSK 390
           +V AMAPK KVNA+D  W+K WFGAG+FAENTE   ++IV+KLEKK LLSQVEKAGLLSK
Sbjct: 5   QVRAMAPKKKVNAHDDAWSKQWFGAGVFAENTETESVDIVKKLEKK-LLSQVEKAGLLSK 63

Query: 391 AESAGLTLSSIEKMGLLSKAEDLGLLSFAESF 486
           AES G++LS IEK+GLLSKAEDLGLL+ AE F
Sbjct: 64  AESLGVSLSQIEKLGLLSKAEDLGLLTLAEKF 95


>tr|B6TFL9|B6TFL9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 189

 Score =  128 bits (321), Expect = 3e-28
 Identities = 62/91 (68%), Positives = 75/91 (82%)
 Frame = +1

Query: 211 KVMAMAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLSK 390
           KV AMAPK KVN YD  W+K WFGAG+FAE +E   +++ +KLE++K+LS VEKAGLLSK
Sbjct: 33  KVTAMAPKKKVNRYDESWSKQWFGAGIFAEGSEEVSVDVFKKLERRKVLSTVEKAGLLSK 92

Query: 391 AESAGLTLSSIEKMGLLSKAEDLGLLSFAES 483
           AE  GLTLSS+EK+GLLSKAEDLGLLS  E+
Sbjct: 93  AEELGLTLSSLEKLGLLSKAEDLGLLSLVET 123


>tr|A9NZ32|A9NZ32_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 209

 Score =  127 bits (320), Expect = 4e-28
 Identities = 63/91 (69%), Positives = 75/91 (82%)
 Frame = +1

Query: 208 LKVMAMAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLS 387
           L ++AMAPK KVN YD +W K WFGAG+F E  E   ++I++KLEK+K+LS VEKAGLLS
Sbjct: 54  LLILAMAPKKKVNKYDDNWKKQWFGAGIFLEGDEDVDVDIIKKLEKRKVLSGVEKAGLLS 113

Query: 388 KAESAGLTLSSIEKMGLLSKAEDLGLLSFAE 480
           KA+  GL+LSSIEKMGLLSKAEDLGLLS AE
Sbjct: 114 KADELGLSLSSIEKMGLLSKAEDLGLLSLAE 144


>tr|B4FRC0|B4FRC0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 153

 Score =  123 bits (309), Expect = 7e-27
 Identities = 59/87 (67%), Positives = 72/87 (82%)
 Frame = +1

Query: 223 MAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLSKAESA 402
           MAPK KVN YD  W+K WFGAG+FAE +E   +++ +KLE++K+LS VEKAGLLSKAE  
Sbjct: 1   MAPKKKVNRYDESWSKQWFGAGIFAEGSEEVSVDVFKKLERRKVLSTVEKAGLLSKAEEL 60

Query: 403 GLTLSSIEKMGLLSKAEDLGLLSFAES 483
           GLTLSS+EK+GLLSKAEDLGLLS  E+
Sbjct: 61  GLTLSSLEKLGLLSKAEDLGLLSLVET 87


>tr|Q0JLN9|Q0JLN9_ORYSJ cDNA clone:J023103B06, full insert sequence
           OS=Oryza sativa subsp. japonica GN=Os01g0585300 PE=2
           SV=1
          Length = 187

 Score =  122 bits (306), Expect = 2e-26
 Identities = 58/91 (63%), Positives = 75/91 (82%)
 Frame = +1

Query: 211 KVMAMAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLSK 390
           KV AMAP+ KVN YD  W+K WFGAG+FAE +E   +++ +KLE++K+LS VEKAGLLS+
Sbjct: 31  KVTAMAPQKKVNRYDEKWSKQWFGAGIFAEGSEEVEVDVFKKLERRKVLSTVEKAGLLSR 90

Query: 391 AESAGLTLSSIEKMGLLSKAEDLGLLSFAES 483
           AE  G+TLSS+E++GLLSKAEDLGLLS  E+
Sbjct: 91  AEELGVTLSSLEELGLLSKAEDLGLLSLVEA 121


>tr|A2WRV9|A2WRV9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02598 PE=4 SV=1
          Length = 187

 Score =  122 bits (306), Expect = 2e-26
 Identities = 58/91 (63%), Positives = 75/91 (82%)
 Frame = +1

Query: 211 KVMAMAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLSK 390
           KV AMAP+ KVN YD  W+K WFGAG+FAE +E   +++ +KLE++K+LS VEKAGLLS+
Sbjct: 31  KVTAMAPQKKVNRYDEKWSKQWFGAGIFAEGSEEVEVDVFKKLERRKVLSTVEKAGLLSR 90

Query: 391 AESAGLTLSSIEKMGLLSKAEDLGLLSFAES 483
           AE  G+TLSS+E++GLLSKAEDLGLLS  E+
Sbjct: 91  AEELGVTLSSLEELGLLSKAEDLGLLSLVEA 121


>tr|B7FFF0|B7FFF0_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 193

 Score =  121 bits (304), Expect = 3e-26
 Identities = 59/89 (66%), Positives = 72/89 (80%)
 Frame = +1

Query: 214 VMAMAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLSKA 393
           V AMAPKNKVN Y+ +W K WFGAG+F E +E   +++ +KLEK+K+LS VEKAGLLSKA
Sbjct: 38  VFAMAPKNKVNKYNDNWKKQWFGAGIFYEGSEEVEVDVFKKLEKRKVLSNVEKAGLLSKA 97

Query: 394 ESAGLTLSSIEKMGLLSKAEDLGLLSFAE 480
           E  G+TLSSIEK+GL SKAE+LGLLS  E
Sbjct: 98  EEFGVTLSSIEKLGLFSKAEELGLLSLLE 126


>tr|A5C347|A5C347_VITVI Putative uncharacterized protein (Chromosome
           chr17 scaffold_101, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00000090001 PE=4 SV=1
          Length = 193

 Score =  120 bits (300), Expect = 7e-26
 Identities = 57/91 (62%), Positives = 71/91 (78%)
 Frame = +1

Query: 208 LKVMAMAPKNKVNAYDSDWNKTWFGAGMFAENTEAAPMNIVQKLEKKKLLSQVEKAGLLS 387
           L+++AMA K KVN YD +W K WFGAG+F E +E   +++ + LEKKK+LS VEK+GLLS
Sbjct: 36  LRILAMASKKKVNRYDENWKKEWFGAGIFVEGSEEVEVDVFKNLEKKKVLSNVEKSGLLS 95

Query: 388 KAESAGLTLSSIEKMGLLSKAEDLGLLSFAE 480
           KAE  G TLSSIEK+G+ SKAEDLGLLS  E
Sbjct: 96  KAEELGFTLSSIEKLGVFSKAEDLGLLSLLE 126