DK955999 |
Clone id |
TST39A01NGRL0024_J12 |
Library |
TST39 |
Length |
552 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_J12. 5' end sequence. |
Accession |
DK955999 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL31Contig1 |
Sequence |
GGTGAAGGCACGCTCTAACAACGTGAAGCCATGGCGCGCGGTCTCAAGAAACATCTGAAA CGTCTCAATGCCCCGAGGCACTGGATGCTTGACAAGCTCGGTGGTGCCTTTGCGCCCAAG CCCTCTGCCGGACCCCATAAGACCAGGGAATGTCTGCCGATGGTTGTCTTGTTGAGGAAT CGGCTGAAGTATGCCTTGACCTATCGTGAAGTGGTTGCCATTGTGATGCAGCGACTCATC TCTGTGGATGGGAAAGTAAGGACGGACAAGTGTTACCCTGCTGGGTTTATGGATGTTGTG TCCATAGCAAAAACCGGAGAGAACTTCCGGTTGCTTTATGATAGCAAAGGAAGATTCACC TTGCACTCCATAAGCCTTGAAGAGGCTAAGTACAAGCTATGCAAGGTCCGAGCTGCCTGC TGCGGCGAGAAGGGGATTCCCTACATCACTACATTTGATGGGCGCACCATTCGCTATCCA GATCCCCTTATCAAGGCCAATGACACCATTAAAATTGAAATTGAAACTGGGAAAGGTTGT AGAGTTCATCAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P46300 |
Definition |
sp|P46300|RS4_SOLTU 40S ribosomal protein S4 OS=Solanum tuberosum |
Align length |
168 |
Score (bit) |
286.0 |
E-value |
4.0e-77 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955999|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_J12, 5' (552 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P46300|RS4_SOLTU 40S ribosomal protein S4 OS=Solanum tuberosu... 286 4e-77 sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3 OS=Arabidopsis t... 286 6e-77 sp|P49204|RS42_ARATH 40S ribosomal protein S4-2 OS=Arabidopsis t... 285 8e-77 sp|Q93VH9|RS41_ARATH 40S ribosomal protein S4-1 OS=Arabidopsis t... 285 8e-77 sp|P46299|RS4_GOSHI 40S ribosomal protein S4 OS=Gossypium hirsut... 285 1e-76 sp|P49398|RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa sub... 285 1e-76 sp|O22424|RS4_MAIZE 40S ribosomal protein S4 OS=Zea mays GN=RPS4... 284 2e-76 sp|O81363|RS4_PRUAR 40S ribosomal protein S4 OS=Prunus armeniaca... 260 3e-69 sp|Q90YS0|RS4_ICTPU 40S ribosomal protein S4 OS=Ictalurus puncta... 259 8e-69 sp|P47961|RS4_CRIGR 40S ribosomal protein S4 OS=Cricetulus grise... 258 2e-68 sp|P79103|RS4_BOVIN 40S ribosomal protein S4 OS=Bos taurus GN=RP... 257 2e-68 sp|P62703|RS4X_RAT 40S ribosomal protein S4, X isoform OS=Rattus... 257 2e-68 sp|P62702|RS4X_MOUSE 40S ribosomal protein S4, X isoform OS=Mus ... 257 2e-68 sp|P62704|RS4X_MESAU 40S ribosomal protein S4, X isoform OS=Meso... 257 2e-68 sp|Q76MY1|RS4X_MACFU 40S ribosomal protein S4, X isoform OS=Maca... 257 2e-68 sp|P62701|RS4X_HUMAN 40S ribosomal protein S4, X isoform OS=Homo... 257 2e-68 sp|P62705|RS4X_FELCA 40S ribosomal protein S4, X isoform OS=Feli... 257 2e-68 sp|Q76N24|RS4X_CERAE 40S ribosomal protein S4, X isoform OS=Cerc... 257 2e-68 sp|Q4PMB3|RS4_IXOSC 40S ribosomal protein S4 OS=Ixodes scapulari... 257 3e-68 sp|Q642H9|RS4X_DANRE 40S ribosomal protein S4, X isoform OS=Dani... 257 3e-68 sp|Q6PBC4|RS4_XENTR 40S ribosomal protein S4 OS=Xenopus tropical... 256 4e-68 sp|Q9USW5|RS4B_SCHPO 40S ribosomal protein S4-B OS=Schizosacchar... 256 4e-68 sp|P87158|RS4A_SCHPO 40S ribosomal protein S4-A OS=Schizosacchar... 256 4e-68 sp|P49401|RS4_XENLA 40S ribosomal protein S4 OS=Xenopus laevis G... 256 5e-68 sp|P47836|RS4_CHICK 40S ribosomal protein S4 OS=Gallus gallus GN... 256 5e-68 sp|Q9P4W9|RS4C_SCHPO 40S ribosomal protein S4-C OS=Schizosacchar... 256 5e-68 sp|Q5UAP0|RS4_BOMMO 40S ribosomal protein S4 OS=Bombyx mori GN=R... 255 1e-67 sp|Q4GXU6|RS4_CARGR 40S ribosomal protein S4 OS=Carabus granulat... 253 3e-67 sp|Q95V34|RS4_SPOFR 40S ribosomal protein S4 OS=Spodoptera frugi... 253 4e-67 sp|O62738|RS4X_MONDO 40S ribosomal protein S4, X isoform OS=Mono... 253 4e-67
>sp|P46300|RS4_SOLTU 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1 Length = 264
Score = 286 bits (733), Expect = 4e-77 Identities = 132/168 (78%), Positives = 155/168 (92%) Frame = +1
Query: 31 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 210 MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPS+GPHK+RECLP+V+++RNRLKYALTYRE Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYRE 60
Query: 211 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 390 V++I+MQR + VDGKVRTDK YPAGFMDVVSI KT ENFRLLYD+KGRF LHS+ EE+K Sbjct: 61 VISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESK 120
Query: 391 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGK 534 +KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIKANDTIK+++E+ K Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNK 168
>sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2 Length = 262
Score = 286 bits (731), Expect = 6e-77 Identities = 134/168 (79%), Positives = 153/168 (91%) Frame = +1
Query: 31 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 210 MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPS+GPHK+RECLP+V+++RNRLKYALTYRE Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 211 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 390 V++I+MQR I VDGKVRTDK YPAGFMDVVSI KT ENFRLLYD+KGRF LHSI EEAK Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120
Query: 391 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGK 534 +KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIK NDTIK+++E K Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANK 168
>sp|P49204|RS42_ARATH 40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4 Length = 262
Score = 285 bits (730), Expect = 8e-77 Identities = 134/168 (79%), Positives = 153/168 (91%) Frame = +1
Query: 31 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 210 MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPS+GPHK+RECLP+V+++RNRLKYALTYRE Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 211 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 390 V++I+MQR I VDGKVRTDK YPAGFMDVVSI KT ENFRLLYD+KGRF LHSI EEAK Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120
Query: 391 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGK 534 +KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIK NDTIK+++E K Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENK 168
>sp|Q93VH9|RS41_ARATH 40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1 Length = 261
Score = 285 bits (730), Expect = 8e-77 Identities = 134/168 (79%), Positives = 153/168 (91%) Frame = +1
Query: 31 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 210 MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPS+GPHK+RECLP+V+++RNRLKYALTYRE Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 211 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 390 V++I+MQR I VDGKVRTDK YPAGFMDVVSI KT ENFRLLYD+KGRF LHSI EEAK Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120
Query: 391 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGK 534 +KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIK NDTIK+++E K Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENK 168
>sp|P46299|RS4_GOSHI 40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1 Length = 262
Score = 285 bits (729), Expect = 1e-76 Identities = 132/168 (78%), Positives = 155/168 (92%) Frame = +1
Query: 31 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 210 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPS+GPHK+RECLP++++LRNRLKYALTYRE Sbjct: 1 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
Query: 211 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 390 V+AI+MQR + VDGKVRTDK YPAGFMDVVSI KT E+FRLLYD+KGRF LH+I+ +E K Sbjct: 61 VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETK 120
Query: 391 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGK 534 +KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIKANDTIK+++E+ K Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNK 168
>sp|P49398|RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3 Length = 265
Score = 285 bits (728), Expect = 1e-76 Identities = 130/168 (77%), Positives = 155/168 (92%) Frame = +1
Query: 31 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 210 MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPS+GPHK+RECLP+++++RNRLKYALTYRE Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 211 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 390 V++I+MQR + VDGKVRTDK YPAGFMDV+SI KTGEN+RLLYD+KGRF L S+ E+AK Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 391 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGK 534 +KLCKVR+ G+KGIPY+ T+DGRTIRYPDP+IKANDTIKI++ET K Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNK 168
>sp|O22424|RS4_MAIZE 40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1 Length = 265
Score = 284 bits (727), Expect = 2e-76 Identities = 131/168 (77%), Positives = 154/168 (91%) Frame = +1
Query: 31 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 210 MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPS+GPHK+RECLP+++++RNRLKYALTYRE Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 211 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 390 V++I+MQR + VDGKVRTDK YPAGFMDV+SI KT EN+RLLYD+KGRF LH I E+AK Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTNENYRLLYDTKGRFRLHPIRDEDAK 120
Query: 391 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGK 534 +KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIKANDTIKI++ET K Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNK 168
>sp|O81363|RS4_PRUAR 40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1 Length = 261
Score = 260 bits (665), Expect = 3e-69 Identities = 126/168 (75%), Positives = 146/168 (86%) Frame = +1
Query: 31 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 210 MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPS+GPHK+RECLP++++LRNRLKYALTYRE Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
Query: 211 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 390 VV+I+MQR I VDGK+ + DVVSI KT ENFRLLYD+KGRF LHSI EE+K Sbjct: 61 VVSILMQRHILVDGKIH----FCIRLSDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 116
Query: 391 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGK 534 +KLCKVR+ G+KGIPYI T+DGRTIRYPDPLIKANDTIK+++ET K Sbjct: 117 FKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNK 164
>sp|Q90YS0|RS4_ICTPU 40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3 Length = 263
Score = 259 bits (661), Expect = 8e-69 Identities = 122/168 (72%), Positives = 140/168 (83%) Frame = +1
Query: 31 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 210 MARG KKHLKR+ AP+HWMLDKL G FAP+PS GPHK RECLP+++ LRNRLKYALT E Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 211 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 390 V I MQR I VDGKVRTD YPAGFMDV+SI KTGENFRL+YD KGRFT+H I+ EEAK Sbjct: 61 VKKICMQRFIKVDGKVRTDITYPAGFMDVISIEKTGENFRLIYDVKGRFTVHRITNEEAK 120
Query: 391 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGK 534 YKLCKV+ G KGIP++ T D RTIRYPDP+IKANDT++I++ETGK Sbjct: 121 YKLCKVKKILIGTKGIPHLVTHDARTIRYPDPMIKANDTVRIDLETGK 168
>sp|P47961|RS4_CRIGR 40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2 Length = 263
Score = 258 bits (658), Expect = 2e-68 Identities = 122/168 (72%), Positives = 139/168 (82%) Frame = +1
Query: 31 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 210 MARG KKHLKR+ AP+HWMLDKL G FAP+PS GPHK RECLP+++ LRNRLKYALT E Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 211 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 390 V I MQR I +DGKVRTD YPAGFMDV+SI KTGENFRL+YD+KGRF +H I+ EEAK Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITSEEAK 120
Query: 391 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGK 534 YKLCKVR G KGIP++ T D RTIRYPDPLIK NDTI+I++ETGK Sbjct: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGK 168
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S0Q0 |
Definition |
tr|A9S0Q0|A9S0Q0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
168 |
Score (bit) |
316.0 |
E-value |
6.0e-85 |
Report |
|