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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956000
Clone id TST39A01NGRL0024_J13
Library
Length 222
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_J13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTAGCCATGCACTCCAAGTATCCATACTCTGCTTGGAGTAACTTCTCATATGATAAGTTA
CTCCAAGTATCCATACTCTGCTTGGCACTCACTAAGGCTGGGTGGGTGGTTTGTGATGCG
AGCATTAAATTGTTGATATTGGGTCCAATATTAACATGGAAGCTTCTTTTATTTCTTGAA
TAATAGTGCTTTGCGTCGGAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q7Z4V0
Definition sp|Q7Z4V0|ZN438_HUMAN Zinc finger protein 438 OS=Homo sapiens
Align length 47
Score (bit) 28.9
E-value 8.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956000|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_J13, 5'
         (199 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7Z4V0|ZN438_HUMAN Zinc finger protein 438 OS=Homo sapiens GN...    29   8.4  

>sp|Q7Z4V0|ZN438_HUMAN Zinc finger protein 438 OS=Homo sapiens
           GN=ZNF438 PE=2 SV=1
          Length = 828

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -3

Query: 167 RSFHVNIGPNINNLMLASQTTHPALVSAKQSMDTWSNLSYEKLLQAE 27
           RS  VN+GP+IN+ +L   T + AL+       T+S ++   +  A+
Sbjct: 58  RSDQVNLGPSINSKLLGMSTQNYALMQVAGQEGTFSLVALPHVASAQ 104
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956000|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_J13, 5'
         (199 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******