DK956006
Clone id TST39A01NGRL0024_J19
Library
Length 547
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_J19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CAAGCTTATACACCTATCCTCCAGGTTCAAGCCTGTGTGGCCATGGCGACCTCGTACATA
TTGCGTCCTCTATGCACTTCACACCTCCTATATCCAACACCGTCTTCCGAAGACAGAGTT
TGTTGCTGCAATGGTCTGCGGGGCAGAAGAAGGGCTGTGCTGCGCCCAACTCTTATCCTG
TCCTGCCCTCGCGACTGTAGTCTGCGTAGCGACTTCTCTCTACTCTCGGTTAAGCTCACG
TCCTCGACTGCACGATTCAGTGGAGTGATTCTCTCTCAAGGTAACTTCACAGGGCAAGCA
AATGCAGTAGCTGATGCAAATGTCAGCGCAACGTTCAGCAATCCGCTTGTTGAAACACAG
CCTCTTTTGGATGCAAGCTCTACAGATTCTAATGGTAGCGCCAGCCCCAGTCCCAGTCCC
GCTGCAGACTCCAGGGCCTGATTTTGGCCCTGAATTTGATTATCAGGTTTATGCTGCTAA
TACCATGGATAACGCTATGAGCCTCCGCCCCCCTCCCCGCAATTCCCTTTTTGGGTGGTC
CCCTTTT
■■Homology search results ■■ -
sp_hit_id Q69566
Definition sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human herpesvirus 6A (strain Uganda-1102)
Align length 51
Score (bit) 32.0
E-value 2.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK956006|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_J19, 5'
(547 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human herpesv... 32 2.0
sp|Q3ZY29|HIS6_DEHSC Imidazole glycerol phosphate synthase subun... 32 2.0
sp|A5FQI9|HIS6_DEHSB Imidazole glycerol phosphate synthase subun... 32 2.0
sp|O57415|RREB1_CHICK RAS-responsive element-binding protein 1 O... 30 7.7

>sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human
herpesvirus 6A (strain Uganda-1102) GN=U88 PE=4 SV=1
Length = 413

Score = 32.0 bits (71), Expect = 2.0
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = -2

Query: 429 VCSXXXXXXXXTIRIC---RACIQKRLCFNKRIAER---CADICISYCICL 295
VC+ R+C R C+ R+C R+ R CA +C+ C+C+
Sbjct: 79 VCARVCARVCVCARVCVCARVCVCARVCVCARVCARVCVCACVCVCACLCV 129


>sp|Q3ZY29|HIS6_DEHSC Imidazole glycerol phosphate synthase subunit
hisF OS=Dehalococcoides sp. (strain CBDB1) GN=hisF PE=3
SV=1
Length = 253

Score = 32.0 bits (71), Expect = 2.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2

Query: 219 REVATQTTVARAGQDKSWAQHSPSSAPQTIAATNSVFGRRC 97
R +A TT+ RAG DK + S P I+ FGR+C
Sbjct: 84 RSIADMTTLLRAGADKVSVNSAAVSDPDLISRGAEKFGRQC 124


>sp|A5FQI9|HIS6_DEHSB Imidazole glycerol phosphate synthase subunit
hisF OS=Dehalococcoides sp. (strain BAV1) GN=hisF PE=3
SV=1
Length = 253

Score = 32.0 bits (71), Expect = 2.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2

Query: 219 REVATQTTVARAGQDKSWAQHSPSSAPQTIAATNSVFGRRC 97
R +A TT+ RAG DK + S P I+ FGR+C
Sbjct: 84 RSIADMTTLLRAGADKVSVNSAAVSDPDLISRGAEKFGRQC 124


>sp|O57415|RREB1_CHICK RAS-responsive element-binding protein 1
OS=Gallus gallus GN=RREB1 PE=2 SV=2
Length = 1615

Score = 30.0 bits (66), Expect = 7.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2

Query: 297 LPCEVTLRENHSTESCSRGRELNRE*REVATQTTVARAGQDKSWAQ 160
L CE T +EN +ES S G R+ E ++ + + + KS A+
Sbjct: 1368 LDCEATGKENEESESISEGEGTERKSTEKSSDDKIPKTDEAKSTAK 1413


tr_hit_id B7FTA9
Definition tr|B7FTA9|B7FTA9_PHATR Predicted protein (Fragment) OS=Phaeodactylum tricornutum CCAP 1055/1
Align length 72
Score (bit) 35.0
E-value 2.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK956006|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_J19, 5'
(547 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B7FTA9|B7FTA9_PHATR Predicted protein (Fragment) OS=Phaeodact... 35 2.6
tr|Q01925|Q01925_SOYBN Orf214 OS=Glycine max PE=4 SV=1 33 9.8

>tr|B7FTA9|B7FTA9_PHATR Predicted protein (Fragment)
OS=Phaeodactylum tricornutum CCAP 1055/1
GN=PHATRDRAFT_43741 PE=4 SV=1
Length = 504

Score = 35.0 bits (79), Expect = 2.6
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = +1

Query: 136 LRGRRRAVLRPTLILSCPRDCSLRSDFSLLSVKLTSSTARFSGVILSQGNFTGQANAVAD 315
+R R+++ RP + SCP D R+ L+S + S ILS F +NA+AD
Sbjct: 1 MRSVRKSMARP--VSSCPTDAGTRASIDRQGCLLSSYQSTSSWQILSVRRFAAMSNALAD 58

Query: 316 ANVSATFSNPLV 351
V + P V
Sbjct: 59 LRVLNRRTIPFV 70


>tr|Q01925|Q01925_SOYBN Orf214 OS=Glycine max PE=4 SV=1
Length = 214

Score = 33.1 bits (74), Expect = 9.8
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1

Query: 493 VIHGISSINLIIKFRAKIRPWSLQRDWD-WGWR 398
+I+ ISS NL +K KI+ W L R W+ WG R
Sbjct: 181 LINAISSSNLFLKKVKKIKRWELGRQWEQWGGR 213