DK956008 |
Clone id |
TST39A01NGRL0024_J21 |
Library |
TST39 |
Length |
522 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_J21. 5' end sequence. |
Accession |
DK956008 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
TTTCAGTTCAACTGTTTTGAAACGTCTAAAGTCTGTTCAGTTTGTTCTTTTCCGTTGGCA CGTGATGCCCTCCCGTTAAACCTTTGTCCCAGAATGCATTTGATCAATTGATTGTCTAAA TTAGGTATAGTACCTTATGAATTGGGATTACTCCATGTGCACTGAAATCTCTAAGATGGC CTCAGTGTTATAAAAGTATTTTTCCTCCCTTGAAGTTATGTGTACGAGGATTTTGTAGTT GATGAGGTAATGGTTGCTTCGACATTCTATCAAGGCTGTATGAAGTGGAGTATTTGTGAT ACCTAGGGGCTGTTCAAAGGCTTCAAGATCAAGGAATCTTATCCATTGAAGAAATTGCTA GGGCAACCGAACTATCGATAAGTCAAATAATCTATCCAGTTGGATTTTACACAAGAAAGG CCAGCTACTTGAAGAAAGTAGTGACATTGTGTCAAGAGAAACATGAAGGGGACATTCCAA ACACATTGAAAGGTCTCCTTGATCTACCAGGAATTGGGCCCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O35980 |
Definition |
sp|O35980|NTHL1_MOUSE Endonuclease III-like protein 1 OS=Mus musculus |
Align length |
72 |
Score (bit) |
68.9 |
E-value |
1.0e-11 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9SIC4 |
Definition |
tr|Q9SIC4|Q9SIC4_ARATH Putative endonuclease OS=Arabidopsis thaliana |
Align length |
71 |
Score (bit) |
87.4 |
E-value |
4.0e-16 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956008|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_J21, 5' (522 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9SIC4|Q9SIC4_ARATH Putative endonuclease OS=Arabidopsis thal... 87 4e-16 tr|Q9FT83|Q9FT83_ARATH Endonuclease III homologue OS=Arabidopsis... 87 4e-16 tr|Q8VZT5|Q8VZT5_ARATH Putative endonuclease OS=Arabidopsis thal... 87 4e-16 tr|Q8LF57|Q8LF57_ARATH Putative endonuclease OS=Arabidopsis thal... 87 4e-16 tr|Q9MA35|Q9MA35_ARATH T20M3.18 protein OS=Arabidopsis thaliana ... 85 2e-15 tr|Q94EJ4|Q94EJ4_ARATH At1g05900/T20M3_15 OS=Arabidopsis thalian... 85 2e-15 tr|Q3EDI2|Q3EDI2_ARATH Uncharacterized protein At1g05900.2 OS=Ar... 85 2e-15 tr|A5AXK0|A5AXK0_VITVI Putative uncharacterized protein OS=Vitis... 84 4e-15 tr|A7QM58|A7QM58_VITVI Chromosome chr5 scaffold_124, whole genom... 83 7e-15 tr|A3KNM8|A3KNM8_DANRE LOC100008368 protein (Fragment) OS=Danio ... 75 3e-12 tr|Q53LY1|Q53LY1_ORYSJ Endonuclease III homologue OS=Oryza sativ... 72 2e-11 tr|Q2R7H4|Q2R7H4_ORYSJ Endonuclease III-like protein 1, putative... 72 2e-11 tr|B8BK00|B8BK00_ORYSI Putative uncharacterized protein OS=Oryza... 72 2e-11 tr|B6U0P3|B6U0P3_MAIZE Endonuclease III-like protein 1 OS=Zea ma... 71 4e-11 tr|B4FKT4|B4FKT4_MAIZE Putative uncharacterized protein OS=Zea m... 71 4e-11 tr|B7ZNV0|B7ZNV0_MOUSE Putative uncharacterized protein (Fragmen... 69 1e-10 tr|B2RSG2|B2RSG2_MOUSE Nth (Endonuclease III)-like 1 (E.coli) (N... 69 1e-10 tr|A8PJK7|A8PJK7_BRUMA Endonuclease III-like protein 1, putative... 69 2e-10 tr|A8XF78|A8XF78_CAEBR CBR-NTH-1 protein OS=Caenorhabditis brigg... 67 4e-10 tr|B5FXS3|B5FXS3_TAEGU Putative Endonuclease III-like protein 1 ... 67 5e-10 tr|A7M7B9|A7M7B9_CHICK Escherichia coli endonuclease III-like 1 ... 67 5e-10 tr|A0ZT94|A0ZT94_CHICK Escherichia coli endonuclease III-like 1 ... 67 5e-10 tr|Q86K43|Q86K43_DICDI Similar to endonuclease [Caenorhabditis e... 67 5e-10 tr|A7SYF1|A7SYF1_NEMVE Predicted protein (Fragment) OS=Nematoste... 67 7e-10 tr|B6K2S6|B6K2S6_SCHJP Endonuclease III-like protein OS=Schizosa... 67 7e-10 tr|B7Q4U2|B7Q4U2_IXOSC Endonuclease, putative OS=Ixodes scapular... 66 9e-10 tr|B6KR91|B6KR91_TOXGO Endonuclease III-like protein 1, putative... 66 1e-09 tr|Q6CKW0|Q6CKW0_KLULA KLLA0F07711p OS=Kluyveromyces lactis GN=K... 65 3e-09 tr|Q4RZY3|Q4RZY3_TETNG Chromosome 18 SCAF14786, whole genome sho... 62 1e-08 tr|Q28J05|Q28J05_XENTR Nth endonuclease III-like 1 (E. coli) OS=... 62 1e-08
>tr|Q9SIC4|Q9SIC4_ARATH Putative endonuclease OS=Arabidopsis thaliana GN=At2g31450 PE=4 SV=2 Length = 379
Score = 87.4 bits (215), Expect = 4e-16 Identities = 38/71 (53%), Positives = 54/71 (76%) Frame = +3
Query: 309 AVQRLQDQGILSIEEIARATELSISQIIYPVGFYTRKASYLKKVVTLCQEKHEGDIPNTL 488 A+ RL G+L+ E + +A E +I ++IYPVGFYTRKA+Y+KK+ +C K++GDIP++L Sbjct: 194 AIHRLHQNGLLTPEAVDKADESTIKELIYPVGFYTRKATYMKKIARICLVKYDGDIPSSL 253
Query: 489 KGLLDLPGIGP 521 LL LPGIGP Sbjct: 254 DDLLSLPGIGP 264
>tr|Q9FT83|Q9FT83_ARATH Endonuclease III homologue OS=Arabidopsis thaliana GN=nth1 PE=2 SV=1 Length = 354
Score = 87.4 bits (215), Expect = 4e-16 Identities = 38/71 (53%), Positives = 54/71 (76%) Frame = +3
Query: 309 AVQRLQDQGILSIEEIARATELSISQIIYPVGFYTRKASYLKKVVTLCQEKHEGDIPNTL 488 A+ RL G+L+ E + +A E +I ++IYPVGFYTRKA+Y+KK+ +C K++GDIP++L Sbjct: 169 AIHRLHQNGLLTPEAVDKADESTIKELIYPVGFYTRKATYMKKIARICLVKYDGDIPSSL 228
Query: 489 KGLLDLPGIGP 521 LL LPGIGP Sbjct: 229 DDLLSLPGIGP 239
>tr|Q8VZT5|Q8VZT5_ARATH Putative endonuclease OS=Arabidopsis thaliana GN=At2g31450 PE=2 SV=1 Length = 377
Score = 87.4 bits (215), Expect = 4e-16 Identities = 38/71 (53%), Positives = 54/71 (76%) Frame = +3
Query: 309 AVQRLQDQGILSIEEIARATELSISQIIYPVGFYTRKASYLKKVVTLCQEKHEGDIPNTL 488 A+ RL G+L+ E + +A E +I ++IYPVGFYTRKA+Y+KK+ +C K++GDIP++L Sbjct: 192 AIHRLHQNGLLTPEAVDKADESTIKELIYPVGFYTRKATYMKKIARICLVKYDGDIPSSL 251
Query: 489 KGLLDLPGIGP 521 LL LPGIGP Sbjct: 252 DDLLSLPGIGP 262
>tr|Q8LF57|Q8LF57_ARATH Putative endonuclease OS=Arabidopsis thaliana PE=2 SV=1 Length = 379
Score = 87.4 bits (215), Expect = 4e-16 Identities = 38/71 (53%), Positives = 54/71 (76%) Frame = +3
Query: 309 AVQRLQDQGILSIEEIARATELSISQIIYPVGFYTRKASYLKKVVTLCQEKHEGDIPNTL 488 A+ RL G+L+ E + +A E +I ++IYPVGFYTRKA+Y+KK+ +C K++GDIP++L Sbjct: 194 AIHRLHQNGLLTPEAVDKADESTIKELIYPVGFYTRKATYMKKIARICLVKYDGDIPSSL 253
Query: 489 KGLLDLPGIGP 521 LL LPGIGP Sbjct: 254 DDLLSLPGIGP 264
>tr|Q9MA35|Q9MA35_ARATH T20M3.18 protein OS=Arabidopsis thaliana GN=T20M3.18 PE=4 SV=1 Length = 402
Score = 85.1 bits (209), Expect = 2e-15 Identities = 39/71 (54%), Positives = 54/71 (76%) Frame = +3
Query: 309 AVQRLQDQGILSIEEIARATELSISQIIYPVGFYTRKASYLKKVVTLCQEKHEGDIPNTL 488 AV+RL G+L+ E I +A E +I ++IYPVGFYTRKA+ +KKV +C +++GDIP TL Sbjct: 201 AVERLHQNGLLTPEAIDKADESTIKELIYPVGFYTRKATNVKKVAKICLMEYDGDIPRTL 260
Query: 489 KGLLDLPGIGP 521 + LL LPG+GP Sbjct: 261 EELLSLPGVGP 271
>tr|Q94EJ4|Q94EJ4_ARATH At1g05900/T20M3_15 OS=Arabidopsis thaliana GN=At1g05900 PE=2 SV=1 Length = 314
Score = 85.1 bits (209), Expect = 2e-15 Identities = 39/71 (54%), Positives = 54/71 (76%) Frame = +3
Query: 309 AVQRLQDQGILSIEEIARATELSISQIIYPVGFYTRKASYLKKVVTLCQEKHEGDIPNTL 488 AV+RL G+L+ E I +A E +I ++IYPVGFYTRKA+ +KKV +C +++GDIP TL Sbjct: 201 AVERLHQNGLLTPEAIDKADESTIKELIYPVGFYTRKATNVKKVAKICLMEYDGDIPRTL 260
Query: 489 KGLLDLPGIGP 521 + LL LPG+GP Sbjct: 261 EELLSLPGVGP 271
>tr|Q3EDI2|Q3EDI2_ARATH Uncharacterized protein At1g05900.2 OS=Arabidopsis thaliana GN=At1g05900 PE=4 SV=1 Length = 386
Score = 85.1 bits (209), Expect = 2e-15 Identities = 39/71 (54%), Positives = 54/71 (76%) Frame = +3
Query: 309 AVQRLQDQGILSIEEIARATELSISQIIYPVGFYTRKASYLKKVVTLCQEKHEGDIPNTL 488 AV+RL G+L+ E I +A E +I ++IYPVGFYTRKA+ +KKV +C +++GDIP TL Sbjct: 201 AVERLHQNGLLTPEAIDKADESTIKELIYPVGFYTRKATNVKKVAKICLMEYDGDIPRTL 260
Query: 489 KGLLDLPGIGP 521 + LL LPG+GP Sbjct: 261 EELLSLPGVGP 271
>tr|A5AXK0|A5AXK0_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017352 PE=4 SV=1 Length = 377
Score = 84.0 bits (206), Expect = 4e-15 Identities = 39/72 (54%), Positives = 54/72 (75%) Frame = +3
Query: 306 GAVQRLQDQGILSIEEIARATELSISQIIYPVGFYTRKASYLKKVVTLCQEKHEGDIPNT 485 GA+QRL G+L + I +A E +I +IYPVGFY+RKA+ LKK+ +C K++GDIP++ Sbjct: 196 GAIQRLLQNGLLVADAIDKADEATIKSLIYPVGFYSRKAANLKKIAKICLMKYDGDIPSS 255
Query: 486 LKGLLDLPGIGP 521 L+ LL LPGIGP Sbjct: 256 LEELLLLPGIGP 267
>tr|A7QM58|A7QM58_VITVI Chromosome chr5 scaffold_124, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00001931001 PE=4 SV=1 Length = 291
Score = 83.2 bits (204), Expect = 7e-15 Identities = 38/72 (52%), Positives = 53/72 (73%) Frame = +3
Query: 306 GAVQRLQDQGILSIEEIARATELSISQIIYPVGFYTRKASYLKKVVTLCQEKHEGDIPNT 485 GA+QRL G+L + I +A E ++ +IYPVGFY+RKA LKK+ +C K++GDIP++ Sbjct: 105 GAIQRLLQNGLLVADAIDKADEATVKSLIYPVGFYSRKAGNLKKIAKICLMKYDGDIPSS 164
Query: 486 LKGLLDLPGIGP 521 L+ LL LPGIGP Sbjct: 165 LEELLLLPGIGP 176
>tr|A3KNM8|A3KNM8_DANRE LOC100008368 protein (Fragment) OS=Danio rerio GN=LOC100008368 PE=2 SV=1 Length = 340
Score = 74.7 bits (182), Expect = 3e-12 Identities = 33/72 (45%), Positives = 53/72 (73%) Frame = +3
Query: 306 GAVQRLQDQGILSIEEIARATELSISQIIYPVGFYTRKASYLKKVVTLCQEKHEGDIPNT 485 GA+QRL++ G LS++ I + + ++ ++IYPVGF+ K Y+K+ L Q++ GDIPNT Sbjct: 97 GAMQRLREHG-LSVDGILKMDDETLGKLIYPVGFWRTKVKYIKQATALIQQEFGGDIPNT 155
Query: 486 LKGLLDLPGIGP 521 ++GL+ LPG+GP Sbjct: 156 VEGLIRLPGVGP 167
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