DK956011 |
Clone id |
TST39A01NGRL0024_J24 |
Library |
TST39 |
Length |
608 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_J24. 5' end sequence. |
Accession |
DK956011 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL543Contig1 |
Sequence |
GAGAGAGAGAGAGAGAAGATAGTGGAGAGTGAAGCGATGGCGAGCTCGTGTGTGGCAGGC AGCAGCGGTAGCTCTCCCTGCCGAATCGTCACACACGCGGCGGCTCACCTCAGGAGACCG ATAGCAGCCGCTTGCCTCGCACCTAAGCTAGAGCGTCCGTCAGGTTTACGAAGCTCTTTC ATCGAGACACTTACCATCACCGCGCGTTCATCAACACGGCTCCTCCGGCTCCGTCTTGCT ATCTGTGTGCGCGCCACAAGCCAGCTGGAGACTAGTAGCTCGCCTGTTTCAAAGGAGGTC GTTCCTGACACGCAATTTTCCATTTTTAAGACATCCTTAGGCACAATTGGACTCAGTGCT GGGCTTGTGCTACTCTCGTATGGTTTTGGCGCATACTTCACTGTTCTTCCGGGAGCTGAA TGGTCGGCTATAATGCTAACATATGGATTTCCGCTCGCAGTTATTGGCATGGCTCTCAAG TATGCAGAGCTAAAACCTGTGCCTTGCACAACATATGCTGATGCTTTGGCTTTACAAGAA GCCCAAGCAACGCCCACTTTGAAGCAGGTAAAGAGTGATGTGACGAGGTTCCGTTACGGT GATGAACA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q55403 |
Definition |
sp|Q55403|Y575_SYNY3 Thylakoid membrane protein slr0575 OS=Synechocystis sp. (strain PCC 6803) |
Align length |
95 |
Score (bit) |
72.4 |
E-value |
2.0e-12 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NSY7 |
Definition |
tr|A9NSY7|A9NSY7_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
121 |
Score (bit) |
172.0 |
E-value |
1.0e-41 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956011|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_J24, 5' (608 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NSY7|A9NSY7_PICSI Putative uncharacterized protein OS=Picea... 172 1e-41 tr|B6TPW9|B6TPW9_MAIZE APE1 OS=Zea mays PE=2 SV=1 168 2e-40 tr|B4F874|B4F874_MAIZE Putative uncharacterized protein OS=Zea m... 168 2e-40 tr|Q6YZK5|Q6YZK5_ORYSJ Os08g0359000 protein OS=Oryza sativa subs... 167 6e-40 tr|B8BA11|B8BA11_ORYSI Putative uncharacterized protein OS=Oryza... 167 6e-40 tr|A7PAM3|A7PAM3_VITVI Chromosome chr14 scaffold_9, whole genome... 162 1e-38 tr|Q8H0W8|Q8H0W8_ARATH Putative uncharacterized protein At5g3866... 161 2e-38 tr|Q2HIR7|Q2HIR7_ARATH At5g38660 OS=Arabidopsis thaliana PE=2 SV=1 161 2e-38 tr|Q8GXZ8|Q8GXZ8_ARATH Putative uncharacterized protein At5g3866... 159 9e-38 tr|A3BSD0|A3BSD0_ORYSJ Putative uncharacterized protein OS=Oryza... 144 5e-33 tr|Q9FFV6|Q9FFV6_ARATH Genomic DNA, chromosome 5, P1 clone:MBB18... 132 2e-29 tr|A9TNK0|A9TNK0_PHYPA Predicted protein (Fragment) OS=Physcomit... 129 1e-28 tr|Q00WY3|Q00WY3_OSTTA Homology to unknown gene OS=Ostreococcus ... 127 4e-28 tr|A8JF87|A8JF87_CHLRE Predicted protein OS=Chlamydomonas reinha... 127 4e-28 tr|A4S6L6|A4S6L6_OSTLU Predicted protein (Fragment) OS=Ostreococ... 125 1e-27 tr|A2YUD7|A2YUD7_ORYSI Putative uncharacterized protein OS=Oryza... 107 7e-22 tr|A9NQG3|A9NQG3_PICSI Putative uncharacterized protein OS=Picea... 101 3e-20 tr|Q10YP5|Q10YP5_TRIEI Putative uncharacterized protein OS=Trich... 77 1e-12 tr|A7QLX1|A7QLX1_VITVI Chromosome chr18 scaffold_122, whole geno... 75 3e-12 tr|Q4BWL4|Q4BWL4_CROWT Putative uncharacterized protein OS=Croco... 75 4e-12 tr|B7KBA9|B7KBA9_9CHRO Putative uncharacterized protein OS=Cyano... 75 4e-12 tr|B5VWA7|B5VWA7_SPIMA Putative uncharacterized protein OS=Arthr... 74 5e-12 tr|B1X1Q3|B1X1Q3_CYAA5 Putative uncharacterized protein OS=Cyano... 74 7e-12 tr|B8BZ46|B8BZ46_THAPS Predicted protein OS=Thalassiosira pseudo... 73 1e-11 tr|A0ZFV4|A0ZFV4_NODSP Putative uncharacterized protein OS=Nodul... 73 1e-11 tr|Q5MZ47|Q5MZ47_SYNP6 Putative uncharacterized protein OS=Synec... 72 2e-11 tr|Q31N42|Q31N42_SYNE7 Putative uncharacterized protein OS=Synec... 72 2e-11 tr|B4AWW2|B4AWW2_9CHRO Putative uncharacterized protein OS=Cyano... 72 2e-11 tr|A3IVT2|A3IVT2_9CHRO Putative uncharacterized protein OS=Cyano... 72 2e-11 tr|A0YX90|A0YX90_9CYAN Putative uncharacterized protein OS=Lyngb... 72 2e-11
>tr|A9NSY7|A9NSY7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 275
Score = 172 bits (436), Expect = 1e-41 Identities = 81/121 (66%), Positives = 98/121 (80%), Gaps = 1/121 (0%) Frame = +1
Query: 247 VRATSQLETSSSPVS-KEVVPDTQFSIFKTSLGTIGLSAGLVLLSYGFGAYFTVLPGAEW 423 VR SQ++ + S K++VPD+ SI K S G +GL+AG LLSYGFGAYF +LPG+EW Sbjct: 58 VRGASQVDAAQPSTSDKQIVPDSDLSITKISFGVVGLAAGTTLLSYGFGAYFNILPGSEW 117
Query: 424 SAIMLTYGFPLAVIGMALKYAELKPVPCTTYADALALQEAQATPTLKQVKSDVTRFRYGD 603 SA+MLTYGFPLA+IGMALKYAELKP+PC TY+DALAL+E +ATP L QV+ DV RFRYGD Sbjct: 118 SALMLTYGFPLAIIGMALKYAELKPIPCITYSDALALRETKATPVLNQVRKDVARFRYGD 177
Query: 604 E 606 E Sbjct: 178 E 178
>tr|B6TPW9|B6TPW9_MAIZE APE1 OS=Zea mays PE=2 SV=1 Length = 261
Score = 168 bits (426), Expect = 2e-40 Identities = 84/123 (68%), Positives = 95/123 (77%), Gaps = 3/123 (2%) Frame = +1
Query: 247 VRATSQLETSSSPVS---KEVVPDTQFSIFKTSLGTIGLSAGLVLLSYGFGAYFTVLPGA 417 VRA + P S K VVPD +FS+ K S G IGL GL LLSYGFG+YF +LPG+ Sbjct: 45 VRAADSSSPPTVPASAAGKAVVPDDEFSLAKVSFGVIGLGLGLSLLSYGFGSYFNLLPGS 104
Query: 418 EWSAIMLTYGFPLAVIGMALKYAELKPVPCTTYADALALQEAQATPTLKQVKSDVTRFRY 597 EWSA++LTYGFPL +IGMALKYAELKPVPC TYADA AL+E ATP LKQV+SDVTRFRY Sbjct: 105 EWSALLLTYGFPLTIIGMALKYAELKPVPCITYADAFALREKCATPILKQVRSDVTRFRY 164
Query: 598 GDE 606 GDE Sbjct: 165 GDE 167
>tr|B4F874|B4F874_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 261
Score = 168 bits (426), Expect = 2e-40 Identities = 84/123 (68%), Positives = 95/123 (77%), Gaps = 3/123 (2%) Frame = +1
Query: 247 VRATSQLETSSSPVS---KEVVPDTQFSIFKTSLGTIGLSAGLVLLSYGFGAYFTVLPGA 417 VRA + P S K VVPD +FS+ K S G IGL GL LLSYGFG+YF +LPG+ Sbjct: 45 VRAAESSSPPTVPASAAGKAVVPDDEFSLAKVSFGVIGLGLGLSLLSYGFGSYFNLLPGS 104
Query: 418 EWSAIMLTYGFPLAVIGMALKYAELKPVPCTTYADALALQEAQATPTLKQVKSDVTRFRY 597 EWSA++LTYGFPL +IGMALKYAELKPVPC TYADA AL+E ATP LKQV+SDVTRFRY Sbjct: 105 EWSALLLTYGFPLTIIGMALKYAELKPVPCITYADAFALREKCATPILKQVRSDVTRFRY 164
Query: 598 GDE 606 GDE Sbjct: 165 GDE 167
>tr|Q6YZK5|Q6YZK5_ORYSJ Os08g0359000 protein OS=Oryza sativa subsp. japonica GN=P0488B06.35 PE=2 SV=1 Length = 271
Score = 167 bits (422), Expect = 6e-40 Identities = 79/112 (70%), Positives = 91/112 (81%) Frame = +1
Query: 271 TSSSPVSKEVVPDTQFSIFKTSLGTIGLSAGLVLLSYGFGAYFTVLPGAEWSAIMLTYGF 450 +S + K VVPD +F++ K S G IGL G LLSYGFGAYF +LPG+EWSA+MLTYGF Sbjct: 68 SSGAAAGKAVVPDEEFTLAKVSFGVIGLGVGGTLLSYGFGAYFNLLPGSEWSALMLTYGF 127
Query: 451 PLAVIGMALKYAELKPVPCTTYADALALQEAQATPTLKQVKSDVTRFRYGDE 606 PL +IGMALKYAELKPVPCTTYADA AL+E ATP L QV+SDVTR+RYGDE Sbjct: 128 PLTIIGMALKYAELKPVPCTTYADAFALREKCATPILNQVRSDVTRYRYGDE 179
>tr|B8BA11|B8BA11_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28948 PE=4 SV=1 Length = 286
Score = 167 bits (422), Expect = 6e-40 Identities = 79/112 (70%), Positives = 91/112 (81%) Frame = +1
Query: 271 TSSSPVSKEVVPDTQFSIFKTSLGTIGLSAGLVLLSYGFGAYFTVLPGAEWSAIMLTYGF 450 +S + K VVPD +F++ K S G IGL G LLSYGFGAYF +LPG+EWSA+MLTYGF Sbjct: 68 SSGAAAGKAVVPDEEFTLAKVSFGVIGLGVGGTLLSYGFGAYFNLLPGSEWSALMLTYGF 127
Query: 451 PLAVIGMALKYAELKPVPCTTYADALALQEAQATPTLKQVKSDVTRFRYGDE 606 PL +IGMALKYAELKPVPCTTYADA AL+E ATP L QV+SDVTR+RYGDE Sbjct: 128 PLTIIGMALKYAELKPVPCTTYADAFALREKCATPILNQVRSDVTRYRYGDE 179
>tr|A7PAM3|A7PAM3_VITVI Chromosome chr14 scaffold_9, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00038180001 PE=4 SV=1 Length = 279
Score = 162 bits (410), Expect = 1e-38 Identities = 77/110 (70%), Positives = 89/110 (80%) Frame = +1
Query: 277 SSPVSKEVVPDTQFSIFKTSLGTIGLSAGLVLLSYGFGAYFTVLPGAEWSAIMLTYGFPL 456 SS K +V D +FS+ K S G IGL G+ LLSYGFGAYF +LPG+EWSAIMLTYGFPL Sbjct: 77 SSLSDKTIVVDEEFSLAKVSFGVIGLGLGITLLSYGFGAYFNILPGSEWSAIMLTYGFPL 136
Query: 457 AVIGMALKYAELKPVPCTTYADALALQEAQATPTLKQVKSDVTRFRYGDE 606 A+IGMALKYAELKPVPC TY+DA L+E ATP LKQV++DV R+RYGDE Sbjct: 137 AIIGMALKYAELKPVPCLTYSDAQKLRETSATPILKQVRNDVIRYRYGDE 186
>tr|Q8H0W8|Q8H0W8_ARATH Putative uncharacterized protein At5g38660 OS=Arabidopsis thaliana GN=At5g38660 PE=2 SV=1 Length = 286
Score = 161 bits (408), Expect = 2e-38 Identities = 77/116 (66%), Positives = 95/116 (81%), Gaps = 4/116 (3%) Frame = +1
Query: 271 TSSSPV----SKEVVPDTQFSIFKTSLGTIGLSAGLVLLSYGFGAYFTVLPGAEWSAIML 438 TSSSP + ++PD +F++ K S G IGL G+ LLSYGFGAYFT+LPG EWSAIML Sbjct: 70 TSSSPSVASGDRTLIPDDEFTLAKISFGVIGLGLGVSLLSYGFGAYFTILPGTEWSAIML 129
Query: 439 TYGFPLAVIGMALKYAELKPVPCTTYADALALQEAQATPTLKQVKSDVTRFRYGDE 606 TYGFPL++IGMALKYAELKPVPC +Y+DA+ L+E+ ATP L QV++DVTR+RYGDE Sbjct: 130 TYGFPLSIIGMALKYAELKPVPCLSYSDAVKLRESCATPILTQVRNDVTRYRYGDE 185
>tr|Q2HIR7|Q2HIR7_ARATH At5g38660 OS=Arabidopsis thaliana PE=2 SV=1 Length = 286
Score = 161 bits (408), Expect = 2e-38 Identities = 77/116 (66%), Positives = 95/116 (81%), Gaps = 4/116 (3%) Frame = +1
Query: 271 TSSSPV----SKEVVPDTQFSIFKTSLGTIGLSAGLVLLSYGFGAYFTVLPGAEWSAIML 438 TSSSP + ++PD +F++ K S G IGL G+ LLSYGFGAYFT+LPG EWSAIML Sbjct: 70 TSSSPSVASGDRTLIPDDEFTLAKISFGVIGLGLGVSLLSYGFGAYFTILPGTEWSAIML 129
Query: 439 TYGFPLAVIGMALKYAELKPVPCTTYADALALQEAQATPTLKQVKSDVTRFRYGDE 606 TYGFPL++IGMALKYAELKPVPC +Y+DA+ L+E+ ATP L QV++DVTR+RYGDE Sbjct: 130 TYGFPLSIIGMALKYAELKPVPCLSYSDAVKLRESCATPILTQVRNDVTRYRYGDE 185
>tr|Q8GXZ8|Q8GXZ8_ARATH Putative uncharacterized protein At5g38660/MBB18_21 OS=Arabidopsis thaliana GN=At5g38660/MBB18_21 PE=2 SV=1 Length = 286
Score = 159 bits (403), Expect = 9e-38 Identities = 76/115 (66%), Positives = 94/115 (81%), Gaps = 4/115 (3%) Frame = +1
Query: 271 TSSSPV----SKEVVPDTQFSIFKTSLGTIGLSAGLVLLSYGFGAYFTVLPGAEWSAIML 438 TSSSP + ++PD +F++ K S G IGL G+ LLSYGFGAYFT+LPG EWSAIML Sbjct: 70 TSSSPSVASGDRTLIPDDEFTLAKISFGVIGLGLGVSLLSYGFGAYFTILPGTEWSAIML 129
Query: 439 TYGFPLAVIGMALKYAELKPVPCTTYADALALQEAQATPTLKQVKSDVTRFRYGD 603 TYGFPL++IGMALKYAELKPVPC +Y+DA+ L+E+ ATP L QV++DVTR+RYGD Sbjct: 130 TYGFPLSIIGMALKYAELKPVPCLSYSDAVKLRESCATPILTQVRNDVTRYRYGD 184
>tr|A3BSD0|A3BSD0_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_025952 PE=4 SV=1 Length = 294
Score = 144 bits (362), Expect = 5e-33 Identities = 71/97 (73%), Positives = 78/97 (80%), Gaps = 6/97 (6%) Frame = +1
Query: 334 SLGTIGLSAGLVLLSYGFGAYFTVLPGAEWSAIMLTYGFPLAVIGMALK------YAELK 495 S G IGL G LLSYGFGAYF +LPG+EWSA+MLTYGFPL +IGMALK YAELK Sbjct: 91 SFGVIGLGVGGTLLSYGFGAYFNLLPGSEWSALMLTYGFPLTIIGMALKARTIPHYAELK 150
Query: 496 PVPCTTYADALALQEAQATPTLKQVKSDVTRFRYGDE 606 PVPCTTYADA AL+E ATP L QV+SDVTR+RYGDE Sbjct: 151 PVPCTTYADAFALREKCATPILNQVRSDVTRYRYGDE 187
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