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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956013
Clone id TST39A01NGRL0024_K02
Library
Length 572
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_K02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GATGAGTATGCAAGAACTCTTCGAGGAGGGGCCGCCCTGTGCAGCGCGAGTTGTTGATGG
CGCTCTCAGAATGGTTGTGGCTGGTGTCACATGGGGGCTTATAGCAGGATCTCATGATTC
TCTGAAAGAAGGATATAGAGGGGTTTCGAGGGCTGCGTATGTGGCTAAATCAGTTGGCAG
GAATAGTGCATTATGGGGCTGTTGTGCGGGAACTTACTACGGATTCAATTGTGGCTTGGA
AAGATTGAGGAGGAGAAGAGATTGGGCAAATGCAGCTGTTGCTGGTGCTGTCACAGGTGC
ACTGCTAGCTGCGAAATCTGGGAGTGGCGCTAAAATTGGTGCTACTTCAGCTACGTTCGC
TGCTGTTGCAACTCTTTTACACCATGTATCTCCACTCCAATATCCACCTACTGGCCTTTA
GCTTGAGAGTTTGGGGCTTACAAGCAAAACTGGAAATATGTAAATGCTCACTTAACTGCA
GAAGTATTGGGCCTCTCAATCAAGTAAATGAGCCGCAAGGTTTTGCAGTGAAGTTGTATC
ATTCTATTAAACTATTGCTTTCTTTGCCATTC
■■Homology search results ■■ -
sp_hit_id Q9Z0V7
Definition sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus
Align length 93
Score (bit) 37.7
E-value 0.041
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956013|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_K02, 5'
         (572 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane transl...    38   0.041
sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane transl...    37   0.053
sp|Q2HJE9|TI17B_BOVIN Mitochondrial import inner membrane transl...    36   0.12 
sp|P39515|TIM17_YEAST Mitochondrial import inner membrane transl...    32   1.7  
sp|Q5XKK7|CO017_HUMAN Uncharacterized protein C15orf17 OS=Homo s...    31   5.0  
sp|P29068|CBPT_THEVU Carboxypeptidase T OS=Thermoactinomyces vul...    30   6.5  

>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane
           translocase subunit Tim17-B OS=Mus musculus GN=Timm17b
           PE=2 SV=1
          Length = 172

 Score = 37.7 bits (86), Expect = 0.041
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
 Frame = +2

Query: 8   MQELFEEGPPCAARVVD---GALRM-VVAGVTWGLIAGSHDS---LKEGYRGVSRAAYV- 163
           M+E   E  PC  R+VD   GA  M V+ G  +  I G  ++   ++  +RG   A  + 
Sbjct: 1   MEEYARE--PCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRFRGSVNAVRIR 58

Query: 164 AKSVGRNSALWGCCAGTYYGFNCGLERLRRRRD 262
           A  +G + A+WG   G +   +CGL RLR + D
Sbjct: 59  APQIGGSFAVWG---GLFSTIDCGLVRLRGKED 88


>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane
           translocase subunit Tim17-B OS=Homo sapiens GN=TIMM17B
           PE=1 SV=1
          Length = 172

 Score = 37.4 bits (85), Expect = 0.053
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
 Frame = +2

Query: 8   MQELFEEGPPCAARVVD---GALRM-VVAGVTWGLIAGSHDS---LKEGYRGVSRAAYV- 163
           M+E   E  PC  R+VD   GA  M V+ G  +  I G  ++   ++   RG + A  + 
Sbjct: 1   MEEYARE--PCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIR 58

Query: 164 AKSVGRNSALWGCCAGTYYGFNCGLERLRRRRD 262
           A  +G + A+WG   G +   +CGL RLR + D
Sbjct: 59  APQIGGSFAVWG---GLFSTIDCGLVRLRGKED 88


>sp|Q2HJE9|TI17B_BOVIN Mitochondrial import inner membrane
           translocase subunit Tim17-B OS=Bos taurus GN=TIMM17B
           PE=2 SV=1
          Length = 172

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
 Frame = +2

Query: 8   MQELFEEGPPCAARVVD---GALRM-VVAGVTWGLIAGSHDS---LKEGYRGVSRAAYV- 163
           M+E   E  PC  R+VD   GA  M V+ G  +  I G  ++   ++   RG   A  + 
Sbjct: 1   MEEYARE--PCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGMRHRLRGSVNAVRIR 58

Query: 164 AKSVGRNSALWGCCAGTYYGFNCGLERLRRRRD 262
           A  +G + A+WG   G +   +CGL RLR + D
Sbjct: 59  APQIGGSFAVWG---GLFSTIDCGLVRLRGKED 88


>sp|P39515|TIM17_YEAST Mitochondrial import inner membrane
           translocase subunit TIM17 OS=Saccharomyces cerevisiae
           GN=TIM17 PE=1 SV=1
          Length = 158

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
 Frame = +2

Query: 35  PCAARVVD---GALRM-VVAGVTWGLIAGSHDSL--KEGYRGVSRAAYVAKSVGRNSALW 196
           PC   +++   GA  M  + GV W  I G  +S   + G   +S     A  +G N  +W
Sbjct: 9   PCPIVILNDFGGAFAMGAIGGVVWHGIKGFRNSPLGERGSGAMSAIKARAPVLGGNFGVW 68

Query: 197 GCCAGTYYGFNCGLERLRRRRD 262
           G   G +  F+C ++ +R+R D
Sbjct: 69  G---GLFSTFDCAVKAVRKRED 87


>sp|Q5XKK7|CO017_HUMAN Uncharacterized protein C15orf17 OS=Homo
           sapiens GN=C15orf17 PE=1 SV=1
          Length = 198

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 271 CSCCWCCHRCTASCEI 318
           CSCCWCC   ++SC +
Sbjct: 182 CSCCWCCLGDSSSCTL 197


>sp|P29068|CBPT_THEVU Carboxypeptidase T OS=Thermoactinomyces
           vulgaris GN=cpt PE=1 SV=1
          Length = 424

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 83  GVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVGRNSAL-WGCCAGT 214
           G  + + +GS+ S ++  +  S ++YV   + RN    WGCC G+
Sbjct: 213 GGEYDISSGSYKSWRKNRQPNSGSSYVGTDLNRNYGYKWGCCGGS 257
tr_hit_id A9TZ45
Definition tr|A9TZ45|A9TZ45_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 88
Score (bit) 114.0
E-value 3.0e-24
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956013|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_K02, 5'
         (572 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TZ45|A9TZ45_PHYPA Predicted protein OS=Physcomitrella paten...   114   3e-24
tr|A9NYH8|A9NYH8_PICSI Putative uncharacterized protein OS=Picea...    86   2e-15
tr|A7Q0D7|A7Q0D7_VITVI Chromosome chr7 scaffold_42, whole genome...    76   1e-12
tr|Q9LZH8|Q9LZH8_ARATH Putative uncharacterized protein F26K9_31...    71   4e-11
tr|A9NKV8|A9NKV8_PICSI Putative uncharacterized protein OS=Picea...    55   4e-06
tr|B8LMN9|B8LMN9_PICSI Putative uncharacterized protein OS=Picea...    52   3e-05
tr|Q65XV6|Q65XV6_ORYSJ Os05g0111200 protein OS=Oryza sativa subs...    50   9e-05
tr|B8AWZ4|B8AWZ4_ORYSI Putative uncharacterized protein OS=Oryza...    50   9e-05
tr|A3AZ87|A3AZ87_ORYSJ Putative uncharacterized protein OS=Oryza...    50   9e-05
tr|Q8LGH9|Q8LGH9_ARATH Putative membrane channel protein OS=Arab...    50   1e-04
tr|Q9ZV24|Q9ZV24_ARATH Putative membrane channel protein (At2g28...    49   2e-04
tr|O82688|O82688_HORVU Amino acid selective channel protein OS=H...    48   3e-04
tr|B3VTB6|B3VTB6_SORBI Amino acid selective channel protein OS=S...    48   3e-04
tr|B8A9Y0|B8A9Y0_ORYSI Putative uncharacterized protein OS=Oryza...    47   8e-04
tr|B6TFZ9|B6TFZ9_MAIZE Amino acid selective channel protein OS=Z...    45   0.002
tr|A7NZ04|A7NZ04_VITVI Chromosome chr6 scaffold_3, whole genome ...    45   0.004
tr|Q41050|Q41050_PEA Core protein OS=Pisum sativum PE=2 SV=1           44   0.006
tr|B7FGP0|B7FGP0_MEDTR Putative uncharacterized protein OS=Medic...    44   0.008
tr|A9PFS3|A9PFS3_POPTR Putative uncharacterized protein OS=Popul...    43   0.014
tr|B6T2H5|B6T2H5_MAIZE Amino acid selective channel protein OS=Z...    42   0.019
tr|A9U1R6|A9U1R6_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.019
tr|A9TN08|A9TN08_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.019
tr|Q4UIE5|Q4UIE5_THEAN Mitochondrial import inner membrane trans...    40   0.070
tr|Q4N769|Q4N769_THEPA Mitochondrial import inner membrane trans...    40   0.070
tr|Q93Z87|Q93Z87_BROIN Stress-inducible membrane pore protein OS...    40   0.12 
tr|B6P7Q7|B6P7Q7_BRAFL Putative uncharacterized protein OS=Branc...    40   0.12 
tr|B6AJQ7|B6AJQ7_9CRYT Mitochondrial import inner membrane trans...    39   0.20 
tr|A9SDP8|A9SDP8_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.35 
tr|Q545H3|Q545H3_MOUSE Putative uncharacterized protein OS=Mus m...    38   0.46 
tr|Q3UBR8|Q3UBR8_MOUSE Putative uncharacterized protein OS=Mus m...    38   0.46 

>tr|A9TZ45|A9TZ45_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_172788 PE=4 SV=1
          Length = 146

 Score =  114 bits (286), Expect = 3e-24
 Identities = 47/88 (53%), Positives = 65/88 (73%)
 Frame = +2

Query: 2   MSMQELFEEGPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVGR 181
           M  ++++E GPPC +R VDG +R+ +AGV WG+  GS+D++KEG+ G SRA YVAKS+ R
Sbjct: 8   MDARDIYEAGPPCVSRAVDGFVRIGMAGVAWGMFMGSYDAVKEGHLGASRALYVAKSITR 67

Query: 182 NSALWGCCAGTYYGFNCGLERLRRRRDW 265
           N   WGC AG Y G NCG+E +R ++DW
Sbjct: 68  NGLGWGCFAGAYLGLNCGVESVRNKKDW 95


>tr|A9NYH8|A9NYH8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 143

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 40/88 (45%), Positives = 57/88 (64%)
 Frame = +2

Query: 2   MSMQELFEEGPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVGR 181
           M M ++ EEGPPC++R V+  +R  VAG+TWG+  G ++  K   +G +RA  VAK VG+
Sbjct: 5   MDMWKVLEEGPPCSSRAVEAFVRFAVAGLTWGMFIGPYEVTKVS-QGSTRAILVAKLVGK 63

Query: 182 NSALWGCCAGTYYGFNCGLERLRRRRDW 265
                G  AG Y  F+CG+ER RR++DW
Sbjct: 64  CGLQCGSFAGIYTAFSCGIERYRRKKDW 91


>tr|A7Q0D7|A7Q0D7_VITVI Chromosome chr7 scaffold_42, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028011001
           PE=4 SV=1
          Length = 130

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 38/86 (44%), Positives = 52/86 (60%)
 Frame = +2

Query: 8   MQELFEEGPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVGRNS 187
           M+  FE   PC++  VD  LR+  AG  WGL    +D+ K+G  G+SR A+VAKSVG+ S
Sbjct: 1   MEGDFEGFVPCSSLAVDSILRVGTAGAIWGLCMSPYDASKKGLTGLSRTAFVAKSVGKIS 60

Query: 188 ALWGCCAGTYYGFNCGLERLRRRRDW 265
              G  AG + G  C ++R RR+ DW
Sbjct: 61  FQCGLVAGVFSGTRCVVQRHRRQNDW 86


>tr|Q9LZH8|Q9LZH8_ARATH Putative uncharacterized protein F26K9_310
           OS=Arabidopsis thaliana GN=F26K9_310 PE=2 SV=1
          Length = 136

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 35/86 (40%), Positives = 51/86 (59%)
 Frame = +2

Query: 8   MQELFEEGPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVGRNS 187
           M+E      PC++  V+  LR+  AG  +GL AG  D+ K G  GVS+A++VAKS+GR  
Sbjct: 1   MEEELLSAVPCSSLTVESVLRVATAGGLYGLCAGPRDARKIGLSGVSQASFVAKSIGRFG 60

Query: 188 ALWGCCAGTYYGFNCGLERLRRRRDW 265
              G  +G +   +CGL+R R + DW
Sbjct: 61  FQCGLVSGVFTMTHCGLQRYRGKNDW 86


>tr|A9NKV8|A9NKV8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 147

 Score = 54.7 bits (130), Expect = 4e-06
 Identities = 28/83 (33%), Positives = 41/83 (49%)
 Frame = +2

Query: 17  LFEEGPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVGRNSALW 196
           + + G P   R VDG L++   G +  L+  ++ SL +G        +  K +G     W
Sbjct: 18  VIDMGNPLLNRTVDGFLKIGTVGASRVLVEETYSSLSKGSVTKHDLEHTIKKMGIEGLKW 77

Query: 197 GCCAGTYYGFNCGLERLRRRRDW 265
           G  AG Y G   G+ER+R RRDW
Sbjct: 78  GAVAGVYTGVEYGVERIRGRRDW 100


>tr|B8LMN9|B8LMN9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 145

 Score = 51.6 bits (122), Expect = 3e-05
 Identities = 28/83 (33%), Positives = 42/83 (50%)
 Frame = +2

Query: 17  LFEEGPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVGRNSALW 196
           + + G P   R VDG L++   G +  L+  ++ SL +G   V++       +G     W
Sbjct: 18  VIDMGNPLLNRTVDGFLKIGTVGASRVLVEETYSSLSKG--SVTKHDLEHTKMGIEGLKW 75

Query: 197 GCCAGTYYGFNCGLERLRRRRDW 265
           G  AG Y G   G+ER+R RRDW
Sbjct: 76  GAVAGVYTGVEYGVERIRGRRDW 98


>tr|Q65XV6|Q65XV6_ORYSJ Os05g0111200 protein OS=Oryza sativa subsp.
           japonica GN=P0016H04.12 PE=2 SV=1
          Length = 146

 Score = 50.1 bits (118), Expect = 9e-05
 Identities = 26/79 (32%), Positives = 36/79 (45%)
 Frame = +2

Query: 29  GPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVGRNSALWGCCA 208
           G P   R VDG L++   G        + D L  G     +  ++ K + +  A WG  A
Sbjct: 22  GNPFLNRTVDGFLKIGAVGACKVAAEDTFDCLHRGDVSKHKLEHMLKKMCKEGAYWGTVA 81

Query: 209 GTYYGFNCGLERLRRRRDW 265
           G Y G   G+ER+R R DW
Sbjct: 82  GVYVGMEYGVERIRGRHDW 100


>tr|B8AWZ4|B8AWZ4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18168 PE=4 SV=1
          Length = 146

 Score = 50.1 bits (118), Expect = 9e-05
 Identities = 26/79 (32%), Positives = 36/79 (45%)
 Frame = +2

Query: 29  GPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVGRNSALWGCCA 208
           G P   R VDG L++   G        + D L  G     +  ++ K + +  A WG  A
Sbjct: 22  GNPFLNRTVDGFLKIGAVGACKVAAEDTFDCLHRGDVSKHKLEHMLKKMCKEGAYWGTVA 81

Query: 209 GTYYGFNCGLERLRRRRDW 265
           G Y G   G+ER+R R DW
Sbjct: 82  GVYVGMEYGVERIRGRHDW 100


>tr|A3AZ87|A3AZ87_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_016109 PE=4 SV=1
          Length = 126

 Score = 50.1 bits (118), Expect = 9e-05
 Identities = 26/79 (32%), Positives = 36/79 (45%)
 Frame = +2

Query: 29  GPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVGRNSALWGCCA 208
           G P   R VDG L++   G        + D L  G     +  ++ K + +  A WG  A
Sbjct: 2   GNPFLNRTVDGFLKIGAVGACKVAAEDTFDCLHRGDVSKHKLEHMLKKMCKEGAYWGTVA 61

Query: 209 GTYYGFNCGLERLRRRRDW 265
           G Y G   G+ER+R R DW
Sbjct: 62  GVYVGMEYGVERIRGRHDW 80


>tr|Q8LGH9|Q8LGH9_ARATH Putative membrane channel protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 148

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 24/79 (30%), Positives = 37/79 (46%)
 Frame = +2

Query: 29  GPPCAARVVDGALRMVVAGVTWGLIAGSHDSLKEGYRGVSRAAYVAKSVGRNSALWGCCA 208
           G P     VD  L++   GVT  L   ++ ++++G    S   +  K + +    WG   
Sbjct: 22  GNPFLNLTVDAFLKIGAVGVTKSLAEDTYKAIEKGSLSKSTLEHALKKLCKEGVYWGAAG 81

Query: 209 GTYYGFNCGLERLRRRRDW 265
           G Y G   G+ER+R  RDW
Sbjct: 82  GVYIGTEYGIERIRGSRDW 100