DK956029 |
Clone id |
TST39A01NGRL0024_K18 |
Library |
TST39 |
Length |
793 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_K18. 5' end sequence. |
Accession |
DK956029 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL881Contig1 |
Sequence |
GCGAAGGAACAACCTAACACAGAAGAGAGCGAACCATCCTTTGAACACAGAAGAGAGCGA ACGTCATTCGTCTTCTTGCAAGTCATCATGCCTCGTCGAAGCGGTGGTGGAGGGCGATCA GGCTCTCGTCCCATGCGCAGTGCCCATCTTCCCTCACGCAGTGCACCACCTCCTGCCCCT GTTCAACATGCACCTCCGCCGGCTCCAGTGCAAAGTAGTGGTGGCTCAATGATGGGTGGC CTTGGGGCTACCATCGCTCAAGGGATGGCTTTTGGGACTGGAAGTGCCATTGCTCACCGA GCTGTTGATGGGGTGATGGGACCTAGAACCGTGACCCATGAGCATATGACTCCTGATGCA CCTGTTTCTGCAGCTTCCCCAAATCTGACCACAGTTAGTGGGTCAGATGCGTGTGCGAAT CAGACTAAGTCCTTCCAAGATTGCGTCAATGCTTATGGCAGTGACATTGGGAAGTGCCAA TTTTACATTGATATGCTGAATGAGTGCCGCCGTGGACCGTCATCATCCATGATGCTGTAA TGATTGGACAGTATTGGGAATGAGTTCTAGGAACTTCTTAATGGATGGAAAAAAATTTTT TAAGTTTGATGGGAAAAGATCGTGTGAAAGGGGGTCATAAAAACCGTTGGGTTGGGCTCC AGTGGGATTGGGAAGGGGGGTAGTTTGGTTGGGGTAAGAACTTTGGAAAAAGAAATTTTT TTTTATTTTGGGGTCCCTTTATTTGGAAAAACCAAAAGGGGTTCCCCTTACCTATACAAA AAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q10307 |
Definition |
sp|Q10307|YD52_SCHPO Uncharacterized protein C6C3.02c OS=Schizosaccharomyces pombe |
Align length |
107 |
Score (bit) |
37.4 |
E-value |
0.095 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TBQ5 |
Definition |
tr|A9TBQ5|A9TBQ5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
91 |
Score (bit) |
133.0 |
E-value |
2.0e-29 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956029|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_K18, 5' (777 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TBQ5|A9TBQ5_PHYPA Predicted protein OS=Physcomitrella paten... 133 2e-29 tr|A9NKP0|A9NKP0_PICSI Putative uncharacterized protein OS=Picea... 130 1e-28 tr|A9U335|A9U335_PHYPA Predicted protein OS=Physcomitrella paten... 129 2e-28 tr|A9NS75|A9NS75_PICSI Putative uncharacterized protein OS=Picea... 128 5e-28 tr|A9NPP6|A9NPP6_PICSI Putative uncharacterized protein OS=Picea... 128 5e-28 tr|A7QM14|A7QM14_VITVI Chromosome undetermined scaffold_123, who... 127 9e-28 tr|Q9AUL2|Q9AUL2_ORYSA Putative uncharacterized protein OSJNBb00... 124 6e-27 tr|Q7XXS3|Q7XXS3_ORYSJ Os03g0685500 protein OS=Oryza sativa subs... 124 6e-27 tr|B8APK7|B8APK7_ORYSI Putative uncharacterized protein OS=Oryza... 124 6e-27 tr|A9PDV5|A9PDV5_POPTR Putative uncharacterized protein OS=Popul... 124 6e-27 tr|B6TU93|B6TU93_MAIZE p8MTCP1 OS=Zea mays PE=4 SV=1 123 2e-26 tr|B6TKB9|B6TKB9_MAIZE p8MTCP1 OS=Zea mays PE=2 SV=1 123 2e-26 tr|B6SYU7|B6SYU7_MAIZE p8MTCP1 OS=Zea mays PE=2 SV=1 123 2e-26 tr|B4FQ38|B4FQ38_MAIZE Putative uncharacterized protein OS=Zea m... 122 2e-26 tr|B4FPU2|B4FPU2_MAIZE Putative uncharacterized protein OS=Zea m... 122 2e-26 tr|B6TMH9|B6TMH9_MAIZE p8MTCP1 OS=Zea mays PE=2 SV=1 121 6e-26 tr|A9PAP4|A9PAP4_POPTR Putative uncharacterized protein OS=Popul... 120 1e-25 tr|A5C8U7|A5C8U7_VITVI Putative uncharacterized protein (Fragmen... 120 1e-25 tr|B6T269|B6T269_MAIZE p8MTCP1 OS=Zea mays PE=2 SV=1 119 2e-25 tr|A7NUJ9|A7NUJ9_VITVI Chromosome chr18 scaffold_1, whole genome... 119 2e-25 tr|A5BAI7|A5BAI7_VITVI Putative uncharacterized protein OS=Vitis... 119 3e-25 tr|Q9FME9|Q9FME9_ARATH Emb|CAB89373.1 OS=Arabidopsis thaliana GN... 107 7e-22 tr|A9RXK6|A9RXK6_PHYPA Predicted protein OS=Physcomitrella paten... 107 1e-21 tr|Q5YJM4|Q5YJM4_HYAOR Putative uncharacterized protein OS=Hyaci... 105 5e-21 tr|B6SJ12|B6SJ12_MAIZE p8MTCP1 OS=Zea mays PE=2 SV=1 101 5e-20 tr|Q9LXC2|Q9LXC2_ARATH Putative uncharacterized protein F17I14_2... 96 2e-18 tr|A8J0Y5|A8J0Y5_CHLRE Predicted protein (Fragment) OS=Chlamydom... 96 3e-18 tr|B6T1P5|B6T1P5_MAIZE p8MTCP1 OS=Zea mays PE=4 SV=1 86 3e-15 tr|Q2HV96|Q2HV96_MEDTR CHCH OS=Medicago truncatula GN=MtrDRAFT_A... 74 1e-11 tr|Q2QLL3|Q2QLL3_ORYSJ Os12g0637900 protein OS=Oryza sativa subs... 68 8e-10
>tr|A9TBQ5|A9TBQ5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_169185 PE=4 SV=1 Length = 142
Score = 133 bits (334), Expect = 2e-29 Identities = 64/91 (70%), Positives = 73/91 (80%) Frame = +1
Query: 247 ATIAQGMAFGTGSAIAHRAVDGVMGPRTVTHEHMTPDAPVSAASPNLTTVSGSDACANQT 426 +TIAQG+AFGTGSA+AHRAVD VMGPRTV HEH+ +P VS +DACANQ+ Sbjct: 48 STIAQGLAFGTGSAVAHRAVDSVMGPRTVVHEHVGGQPDSGGQAPLAQPVS-ADACANQS 106
Query: 427 KSFQDCVNAYGSDIGKCQFYIDMLNECRRGP 519 K+FQDCVNA SDIG+CQFYIDMLNECRRGP Sbjct: 107 KAFQDCVNANNSDIGRCQFYIDMLNECRRGP 137
>tr|A9NKP0|A9NKP0_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 146
Score = 130 bits (327), Expect = 1e-28 Identities = 59/92 (64%), Positives = 73/92 (79%), Gaps = 1/92 (1%) Frame = +1
Query: 247 ATIAQGMAFGTGSAIAHRAVDGVMGPRTVTHEHMTPDAPVS-AASPNLTTVSGSDACANQ 423 +TIAQG+AFGTGSAIAHRAVD V+GPRTV HE+ + P + S ++ + G D+C NQ Sbjct: 50 STIAQGVAFGTGSAIAHRAVDAVVGPRTVQHEYAPAETPAAQTGSLSVANMGGMDSCTNQ 109
Query: 424 TKSFQDCVNAYGSDIGKCQFYIDMLNECRRGP 519 K+FQDC++ YGSDI KCQFY+DMLNECRRGP Sbjct: 110 AKAFQDCISNYGSDISKCQFYVDMLNECRRGP 141
>tr|A9U335|A9U335_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_155222 PE=4 SV=1 Length = 139
Score = 129 bits (324), Expect = 2e-28 Identities = 64/91 (70%), Positives = 73/91 (80%) Frame = +1
Query: 247 ATIAQGMAFGTGSAIAHRAVDGVMGPRTVTHEHMTPDAPVSAASPNLTTVSGSDACANQT 426 +TIAQG+AFGTGSA+A+RAVD +MGPRTV HEH+ A S P VS +DAC NQ+ Sbjct: 47 STIAQGLAFGTGSAVANRAVDSIMGPRTVVHEHI--GASESGGQPLAQPVS-ADACVNQS 103
Query: 427 KSFQDCVNAYGSDIGKCQFYIDMLNECRRGP 519 K+FQDCVNA SDIGKCQFYIDMLNECRRGP Sbjct: 104 KAFQDCVNANNSDIGKCQFYIDMLNECRRGP 134
>tr|A9NS75|A9NS75_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 143
Score = 128 bits (321), Expect = 5e-28 Identities = 58/92 (63%), Positives = 75/92 (81%), Gaps = 2/92 (2%) Frame = +1
Query: 247 ATIAQGMAFGTGSAIAHRAVDGVMGPRTVTHEHMTPDAPVSAAS--PNLTTVSGSDACAN 420 +TIA+G+AFGTGSAIAHRAVD +GPRTV HE + +AP +A + P ++ +SG D+C N Sbjct: 46 STIAEGVAFGTGSAIAHRAVDAFLGPRTVQHEVVQAEAPAAAQTSMPAMSNLSGKDSCGN 105
Query: 421 QTKSFQDCVNAYGSDIGKCQFYIDMLNECRRG 516 +K+FQ+C+ YGSDIGKCQFY+DMLNECRRG Sbjct: 106 HSKAFQECLTNYGSDIGKCQFYLDMLNECRRG 137
>tr|A9NPP6|A9NPP6_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 143
Score = 128 bits (321), Expect = 5e-28 Identities = 58/92 (63%), Positives = 75/92 (81%), Gaps = 2/92 (2%) Frame = +1
Query: 247 ATIAQGMAFGTGSAIAHRAVDGVMGPRTVTHEHMTPDAPVSAAS--PNLTTVSGSDACAN 420 +TIA+G+AFGTGSAIAHRAVD +GPRTV HE + +AP +A + P ++ +SG D+C N Sbjct: 46 STIAEGVAFGTGSAIAHRAVDAFLGPRTVQHEVVQAEAPAAAQTSMPAMSNLSGKDSCGN 105
Query: 421 QTKSFQDCVNAYGSDIGKCQFYIDMLNECRRG 516 +K+FQ+C+ YGSDIGKCQFY+DMLNECRRG Sbjct: 106 HSKAFQECLTNYGSDIGKCQFYLDMLNECRRG 137
>tr|A7QM14|A7QM14_VITVI Chromosome undetermined scaffold_123, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00001871001 PE=4 SV=1 Length = 145
Score = 127 bits (319), Expect = 9e-28 Identities = 60/89 (67%), Positives = 72/89 (80%) Frame = +1
Query: 247 ATIAQGMAFGTGSAIAHRAVDGVMGPRTVTHEHMTPDAPVSAASPNLTTVSGSDACANQT 426 ATIAQGMAFGTGSA+AHRAVD VMGPRT+ HE + +A S+A P + V GSDAC + Sbjct: 50 ATIAQGMAFGTGSAVAHRAVDAVMGPRTIQHETVASEAAASSA-PTMNNVGGSDACNAHS 108
Query: 427 KSFQDCVNAYGSDIGKCQFYIDMLNECRR 513 K+FQDC+N+ GSDI KCQFY+DML+ECRR Sbjct: 109 KAFQDCLNSSGSDISKCQFYMDMLSECRR 137
>tr|Q9AUL2|Q9AUL2_ORYSA Putative uncharacterized protein OSJNBb0072E24.9 OS=Oryza sativa GN=OSJNBb0072E24.9 PE=4 SV=1 Length = 138
Score = 124 bits (312), Expect = 6e-27 Identities = 58/90 (64%), Positives = 71/90 (78%) Frame = +1
Query: 247 ATIAQGMAFGTGSAIAHRAVDGVMGPRTVTHEHMTPDAPVSAASPNLTTVSGSDACANQT 426 +TIAQGMAFGTGSA+AHRAVD VMGPRT+ HE + +A SA + + SD+C+ + Sbjct: 47 STIAQGMAFGTGSAMAHRAVDAVMGPRTIQHETVVSEAAASATP--MANATPSDSCSIHS 104
Query: 427 KSFQDCVNAYGSDIGKCQFYIDMLNECRRG 516 K+FQDC+N YGSDI KCQFY+DMLNECRRG Sbjct: 105 KAFQDCINNYGSDISKCQFYLDMLNECRRG 134
>tr|Q7XXS3|Q7XXS3_ORYSJ Os03g0685500 protein OS=Oryza sativa subsp. japonica GN=Os03g0685500 PE=2 SV=1 Length = 138
Score = 124 bits (312), Expect = 6e-27 Identities = 58/90 (64%), Positives = 71/90 (78%) Frame = +1
Query: 247 ATIAQGMAFGTGSAIAHRAVDGVMGPRTVTHEHMTPDAPVSAASPNLTTVSGSDACANQT 426 +TIAQGMAFGTGSA+AHRAVD VMGPRT+ HE + +A SA + + SD+C+ + Sbjct: 47 STIAQGMAFGTGSAMAHRAVDAVMGPRTIQHETVVSEAAASATP--MANATPSDSCSIHS 104
Query: 427 KSFQDCVNAYGSDIGKCQFYIDMLNECRRG 516 K+FQDC+N YGSDI KCQFY+DMLNECRRG Sbjct: 105 KAFQDCINNYGSDISKCQFYLDMLNECRRG 134
>tr|B8APK7|B8APK7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_13062 PE=4 SV=1 Length = 126
Score = 124 bits (312), Expect = 6e-27 Identities = 58/90 (64%), Positives = 71/90 (78%) Frame = +1
Query: 247 ATIAQGMAFGTGSAIAHRAVDGVMGPRTVTHEHMTPDAPVSAASPNLTTVSGSDACANQT 426 +TIAQGMAFGTGSA+AHRAVD VMGPRT+ HE + +A SA + + SD+C+ + Sbjct: 35 STIAQGMAFGTGSAMAHRAVDAVMGPRTIQHETVVSEAAASATP--MANATPSDSCSIHS 92
Query: 427 KSFQDCVNAYGSDIGKCQFYIDMLNECRRG 516 K+FQDC+N YGSDI KCQFY+DMLNECRRG Sbjct: 93 KAFQDCINNYGSDISKCQFYLDMLNECRRG 122
>tr|A9PDV5|A9PDV5_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 146
Score = 124 bits (312), Expect = 6e-27 Identities = 57/89 (64%), Positives = 73/89 (82%) Frame = +1
Query: 247 ATIAQGMAFGTGSAIAHRAVDGVMGPRTVTHEHMTPDAPVSAASPNLTTVSGSDACANQT 426 +TIAQGMAFGTGSA+AHRAVD VMGPRT+ HE + +A +AA+P +++ G+DAC T Sbjct: 51 STIAQGMAFGTGSAVAHRAVDAVMGPRTIQHETVVSEA-AAAAAPTASSMGGADACNIHT 109
Query: 427 KSFQDCVNAYGSDIGKCQFYIDMLNECRR 513 K+FQDCVN +G+DI KCQFY+DML ECR+ Sbjct: 110 KAFQDCVNNFGNDISKCQFYMDMLTECRK 138
|