DK956038 |
Clone id |
TST39A01NGRL0024_L03 |
Library |
TST39 |
Length |
624 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_L03. 5' end sequence. |
Accession |
DK956038 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GGCTGCATTTCTGCAGTCCTTGGCGAGGAGGAGAGGTGTTTTCTGCGTGCGCCGTAGCCA GGTTTTTGGGTGCAAGGTCGAGCAGCTGGACCGCTCTCCGACTTCCACTTTCACTGGATT ACAAAGATATCAATCAGTTGCAGGTGGCCCCTTTGGTCTACCATGGCAGCAGAATGTGTT TCGATTTATTTATACTCTAAGAGGTCCAAAACATAGCCCATTCTCATCTGGAGAGAAAGT GCAGTCAGTTCCTTCTCCTTTGACCATGGTGCCTACTCCTAAGGACCAAAGTAAACAGGC TCCAGGTCAAGTGGATAGAAACAGGCCAGTTCAAGCAGTCCTAAAGAAGATTAAAGAGAG TCCAAAGAAGGTCAATCTGGTAGCAGCCTTGGTTCGAGGCATGCGCGTTGAAGATGCTCT CTTGCAGCTTTCAGTGCTGCAAAAAAGGGCTGCAAAGACAGTACAAAGAGTTGTTTTCAA TGCTCGTGCAAACGCAACACATAATCATGGGCTGAATGGTGATCGCCTATACGTTGCTGA AGCATTTGTTGGTAAAGGTATATATTTGAAGCGAATATCATACCATGCAAAGGGTCGATC TGGGATAATGCATCATCCTAGCTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
A6U864 |
Definition |
sp|A6U864|RL22_SINMW 50S ribosomal protein L22 OS=Sinorhizobium medicae (strain WSM419) |
Align length |
94 |
Score (bit) |
89.7 |
E-value |
1.0e-17 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NXV7 |
Definition |
tr|A9NXV7|A9NXV7_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
137 |
Score (bit) |
171.0 |
E-value |
3.0e-41 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956038|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_L03, 5' (624 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NXV7|A9NXV7_PICSI Putative uncharacterized protein OS=Picea... 171 3e-41 tr|Q8LDU0|Q8LDU0_ARATH Putative uncharacterized protein (Putativ... 150 5e-35 tr|B4G108|B4G108_MAIZE Putative uncharacterized protein OS=Zea m... 149 1e-34 tr|Q5ZDK4|Q5ZDK4_ORYSJ cDNA clone:J033012O14, full insert sequen... 149 2e-34 tr|A2WSM4|A2WSM4_ORYSI Putative uncharacterized protein OS=Oryza... 149 2e-34 tr|Q56W16|Q56W16_ARATH Chloroplast 50S ribosomal protein L22 (At... 148 2e-34 tr|Q9C828|Q9C828_ARATH Chloroplast 50S ribosomal protein L22, pu... 147 4e-34 tr|A7Q030|A7Q030_VITVI Chromosome chr8 scaffold_41, whole genome... 145 2e-33 tr|A9SSR4|A9SSR4_PHYPA Predicted protein (Fragment) OS=Physcomit... 106 1e-21 tr|A4RVA9|A4RVA9_OSTLU 50S ribosomal protein L22 (Fragment) OS=O... 100 7e-20 tr|O49444|O49444_ARATH Copper-binding protein-like OS=Arabidopsi... 98 5e-19 tr|B8ELF8|B8ELF8_METSI Ribosomal protein L22 OS=Methylocella sil... 91 4e-17 tr|Q11HQ7|Q11HQ7_MESSB 50S ribosomal protein L22 OS=Mesorhizobiu... 89 2e-16 tr|A7IFY6|A7IFY6_XANP2 50S ribosomal protein L22 OS=Xanthobacter... 88 5e-16 tr|B2IK67|B2IK67_BEII9 Ribosomal protein L22 OS=Beijerinckia ind... 87 6e-16 tr|A8IAR4|A8IAR4_AZOC5 50S ribosomal protein L22 OS=Azorhizobium... 87 6e-16 tr|A6X0C3|A6X0C3_OCHA4 50S ribosomal protein L22 OS=Ochrobactrum... 87 6e-16 tr|A9IW22|A9IW22_BART1 50S ribosomal protein L22 OS=Bartonella t... 87 8e-16 tr|Q0G7H0|Q0G7H0_9RHIZ 50S ribosomal protein L22 OS=Fulvimarina ... 87 8e-16 tr|Q0FIF1|Q0FIF1_9RHOB 50S ribosomal protein L22 OS=Roseovarius ... 87 8e-16 tr|A9DCG4|A9DCG4_9RHIZ 50S ribosomal protein L22 OS=Hoeflea phot... 87 8e-16 tr|A3JXE8|A3JXE8_9RHOB 50S ribosomal protein L22 OS=Sagittula st... 87 8e-16 tr|B6F2S9|B6F2S9_LIBAS 50S ribosomal protein L22 OS=Candidatus L... 86 1e-15 tr|B4W9W4|B4W9W4_9CAUL Ribosomal protein L22 OS=Brevundimonas sp... 86 2e-15 tr|A4U4E6|A4U4E6_9PROT 50S ribosomal protein L22 OS=Magnetospiri... 86 2e-15 tr|A9M5P5|A9M5P5_BRUC2 Ribosomal protein L22 OS=Brucella canis (... 86 2e-15 tr|A5VR01|A5VR01_BRUO2 Ribosomal protein L22 OS=Brucella ovis (s... 86 2e-15 tr|Q075U2|Q075U2_BRUCA 50S ribosomal protein L22 OS=Brucella can... 86 2e-15 tr|Q075U0|Q075U0_BRUOV L22 ribosomal protein OS=Brucella ovis GN... 86 2e-15 tr|Q075T9|Q075T9_BRUSU L22 ribosomal protein OS=Brucella suis 13... 86 2e-15
>tr|A9NXV7|A9NXV7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 361
Score = 171 bits (433), Expect = 3e-41 Identities = 88/137 (64%), Positives = 103/137 (75%) Frame = +2
Query: 209 KHSPFSSGEKVQSVPSPLTMVPTPKDQSKQAPGQVDRNRPVQAVLKKIKESPKKVNLVAA 388 +H SS +Q +PSPL+ VP + V R R VQAVLKKIK+SPKKVNLVAA Sbjct: 161 RHVEASSETNIQPMPSPLSQVPALLSGKTEEESSVQRKRTVQAVLKKIKQSPKKVNLVAA 220
Query: 389 LVRGMRVEDALLQLSVLQKRAAKTVQRVVFNARANATHNHGLNGDRLYVAEAFVGKGIYL 568 LVRGMRVEDALLQ+ V KRAAKTV +V+ +ARANA HNHGL+GDRL +A+AFVGKG++ Sbjct: 221 LVRGMRVEDALLQMQVTVKRAAKTVYKVIHSARANAVHNHGLDGDRLIIAQAFVGKGLFR 280
Query: 569 KRISYHAKGRSGIMHHP 619 K ISYHAKGRSGI P Sbjct: 281 KTISYHAKGRSGIRVRP 297
>tr|Q8LDU0|Q8LDU0_ARATH Putative uncharacterized protein (Putative uncharacterized protein At4g28355) (At4g28360) OS=Arabidopsis thaliana GN=At4g28355 PE=2 SV=1 Length = 271
Score = 150 bits (380), Expect = 5e-35 Identities = 87/165 (52%), Positives = 112/165 (67%), Gaps = 8/165 (4%) Frame = +2
Query: 149 PFGLPWQQNVFRFIYTLRGPKHS----PFSSGEKVQS----VPSPLTMVPTPKDQSKQAP 304 PF + Q++ R Y+ R H S+ ++Q+ V SPL+ ++ Sbjct: 39 PFSQGYLQSLLRPSYSSRPLYHHLQQLGISTSRQLQASEEPVSSPLSSPALLGSGKEEEQ 98
Query: 305 GQVDRNRPVQAVLKKIKESPKKVNLVAALVRGMRVEDALLQLSVLQKRAAKTVQRVVFNA 484 + + + VQAVLK IK+SPKKVNLVAALVRGMRVEDAL+QL V KRAA+TV RV+ A Sbjct: 99 KIIPKRQKVQAVLKSIKQSPKKVNLVAALVRGMRVEDALIQLQVTVKRAAQTVYRVIHAA 158
Query: 485 RANATHNHGLNGDRLYVAEAFVGKGIYLKRISYHAKGRSGIMHHP 619 RANATHNHGL+ DRL VAEAFVGKG++ K+++YHAKGRSGI+ P Sbjct: 159 RANATHNHGLDPDRLLVAEAFVGKGLFGKKVAYHAKGRSGIISIP 203
>tr|B4G108|B4G108_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 288
Score = 149 bits (377), Expect = 1e-34 Identities = 79/124 (63%), Positives = 94/124 (75%) Frame = +2
Query: 248 VPSPLTMVPTPKDQSKQAPGQVDRNRPVQAVLKKIKESPKKVNLVAALVRGMRVEDALLQ 427 + SPLT P + G V + VQA+ K IK+SPKKVNLVA LVRGMRVEDALLQ Sbjct: 105 ISSPLTP-PLGDSEETDKKGAVVKRLKVQAIKKDIKQSPKKVNLVAKLVRGMRVEDALLQ 163
Query: 428 LSVLQKRAAKTVQRVVFNARANATHNHGLNGDRLYVAEAFVGKGIYLKRISYHAKGRSGI 607 L V KRAAKTV +V+ +ARANA+HNHGL+ D+L V EAFVGKG++LKR+SYHA+GRSGI Sbjct: 164 LQVTVKRAAKTVYQVIHSARANASHNHGLDPDKLIVEEAFVGKGLFLKRVSYHARGRSGI 223
Query: 608 MHHP 619 M P Sbjct: 224 MVRP 227
>tr|Q5ZDK4|Q5ZDK4_ORYSJ cDNA clone:J033012O14, full insert sequence OS=Oryza sativa subsp. japonica GN=P0686E09.15 PE=2 SV=1 Length = 278
Score = 149 bits (375), Expect = 2e-34 Identities = 79/124 (63%), Positives = 92/124 (74%) Frame = +2
Query: 248 VPSPLTMVPTPKDQSKQAPGQVDRNRPVQAVLKKIKESPKKVNLVAALVRGMRVEDALLQ 427 V SPLT P + G + + VQA+ K IK+SPKKVNLVA LVRGMRVEDALLQ Sbjct: 95 VSSPLTP-PLGDGEQTDKKGAIVKRLKVQAIKKDIKQSPKKVNLVAKLVRGMRVEDALLQ 153
Query: 428 LSVLQKRAAKTVQRVVFNARANATHNHGLNGDRLYVAEAFVGKGIYLKRISYHAKGRSGI 607 L V KRAAKTV +V+ +ARANA HNHGL+ D+L V EAFVGKG+YLKR+SYHAKGR G+ Sbjct: 154 LQVTVKRAAKTVYQVIHSARANAAHNHGLDPDKLIVEEAFVGKGLYLKRLSYHAKGRCGV 213
Query: 608 MHHP 619 M P Sbjct: 214 MVRP 217
>tr|A2WSM4|A2WSM4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_02868 PE=4 SV=1 Length = 278
Score = 149 bits (375), Expect = 2e-34 Identities = 79/124 (63%), Positives = 92/124 (74%) Frame = +2
Query: 248 VPSPLTMVPTPKDQSKQAPGQVDRNRPVQAVLKKIKESPKKVNLVAALVRGMRVEDALLQ 427 V SPLT P + G + + VQA+ K IK+SPKKVNLVA LVRGMRVEDALLQ Sbjct: 95 VSSPLTP-PLGDGEQTDKKGAIVKRLKVQAIKKDIKQSPKKVNLVAKLVRGMRVEDALLQ 153
Query: 428 LSVLQKRAAKTVQRVVFNARANATHNHGLNGDRLYVAEAFVGKGIYLKRISYHAKGRSGI 607 L V KRAAKTV +V+ +ARANA HNHGL+ D+L V EAFVGKG+YLKR+SYHAKGR G+ Sbjct: 154 LQVTVKRAAKTVYQVIHSARANAAHNHGLDPDKLIVEEAFVGKGLYLKRLSYHAKGRCGV 213
Query: 608 MHHP 619 M P Sbjct: 214 MVRP 217
>tr|Q56W16|Q56W16_ARATH Chloroplast 50S ribosomal protein L22 (At1g52370) OS=Arabidopsis thaliana GN=At1g52370 PE=2 SV=1 Length = 269
Score = 148 bits (374), Expect = 2e-34 Identities = 85/165 (51%), Positives = 112/165 (67%), Gaps = 8/165 (4%) Frame = +2
Query: 149 PFGLPWQQNVFRFIYTLRGPKHS----PFSSGEKVQS----VPSPLTMVPTPKDQSKQAP 304 PF + Q++ R Y+ R + S+ ++Q+ V SPL+ ++ Sbjct: 38 PFSQGYLQSLLRSTYSSRPLYYHLQQLGISTSRQLQAGEEPVSSPLSSPALLGSGKEEEQ 97
Query: 305 GQVDRNRPVQAVLKKIKESPKKVNLVAALVRGMRVEDALLQLSVLQKRAAKTVQRVVFNA 484 + + + VQAVLK IK+SPKKVNLVAALVRGMRVEDAL+QL V KRA++TV RV+ A Sbjct: 98 KIIPKRQKVQAVLKSIKQSPKKVNLVAALVRGMRVEDALMQLQVTVKRASQTVYRVIHAA 157
Query: 485 RANATHNHGLNGDRLYVAEAFVGKGIYLKRISYHAKGRSGIMHHP 619 RANATHNHGL+ DRL VAEAFVGKG++ K+++YHAKGRSGI+ P Sbjct: 158 RANATHNHGLDPDRLLVAEAFVGKGLFGKKVAYHAKGRSGIISIP 202
>tr|Q9C828|Q9C828_ARATH Chloroplast 50S ribosomal protein L22, putative; 25606-24374 OS=Arabidopsis thaliana GN=F19K6.5 PE=4 SV=1 Length = 226
Score = 147 bits (372), Expect = 4e-34 Identities = 81/133 (60%), Positives = 101/133 (75%), Gaps = 2/133 (1%) Frame = +2
Query: 227 SGEKVQSVP--SPLTMVPTPKDQSKQAPGQVDRNRPVQAVLKKIKESPKKVNLVAALVRG 400 +GE+ S P SP + +++ K P + + VQAVLK IK+SPKKVNLVAALVRG Sbjct: 31 AGEEPVSSPLSSPALLGSGKEEEQKIIP----KRQKVQAVLKSIKQSPKKVNLVAALVRG 86
Query: 401 MRVEDALLQLSVLQKRAAKTVQRVVFNARANATHNHGLNGDRLYVAEAFVGKGIYLKRIS 580 MRVEDAL+QL V KRA++TV RV+ ARANATHNHGL+ DRL VAEAFVGKG++ K+++ Sbjct: 87 MRVEDALMQLQVTVKRASQTVYRVIHAARANATHNHGLDPDRLLVAEAFVGKGLFGKKVA 146
Query: 581 YHAKGRSGIMHHP 619 YHAKGRSGI+ P Sbjct: 147 YHAKGRSGIISIP 159
>tr|A7Q030|A7Q030_VITVI Chromosome chr8 scaffold_41, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00027115001 PE=4 SV=1 Length = 271
Score = 145 bits (365), Expect = 2e-33 Identities = 79/127 (62%), Positives = 91/127 (71%) Frame = +2
Query: 239 VQSVPSPLTMVPTPKDQSKQAPGQVDRNRPVQAVLKKIKESPKKVNLVAALVRGMRVEDA 418 V V SPLT + V + VQAVLK IK+SPKKVNLVA LVRGMRVEDA Sbjct: 82 VTPVASPLTPALALNGGKTEDQKVVSKPSKVQAVLKGIKQSPKKVNLVAELVRGMRVEDA 141
Query: 419 LLQLSVLQKRAAKTVQRVVFNARANATHNHGLNGDRLYVAEAFVGKGIYLKRISYHAKGR 598 LLQL + KRA+KTV +V+ +ARANATHNHGL+ DRL VAEAFVGKG + KR+SYHAKG+ Sbjct: 142 LLQLQLTVKRASKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHAKGK 201
Query: 599 SGIMHHP 619 GI P Sbjct: 202 CGIKVRP 208
>tr|A9SSR4|A9SSR4_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_134693 PE=4 SV=1 Length = 150
Score = 106 bits (265), Expect = 1e-21 Identities = 57/88 (64%), Positives = 68/88 (77%) Frame = +2
Query: 356 ESPKKVNLVAALVRGMRVEDALLQLSVLQKRAAKTVQRVVFNARANATHNHGLNGDRLYV 535 +SPKKVNLVA LVRGMRV+DAL+Q++V KRAAK V V +ARANA HN G++ DRL V Sbjct: 1 QSPKKVNLVAELVRGMRVDDALMQMAVSTKRAAKVV---VTSARANAIHNFGMDKDRLIV 57
Query: 536 AEAFVGKGIYLKRISYHAKGRSGIMHHP 619 AEAFVGK YLKR+ H KG++G M P Sbjct: 58 AEAFVGKDKYLKRLRIHGKGKAGQMVRP 85
>tr|A4RVA9|A4RVA9_OSTLU 50S ribosomal protein L22 (Fragment) OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_8608 PE=3 SV=1 Length = 109
Score = 100 bits (249), Expect = 7e-20 Identities = 49/95 (51%), Positives = 68/95 (71%) Frame = +2
Query: 335 AVLKKIKESPKKVNLVAALVRGMRVEDALLQLSVLQKRAAKTVQRVVFNARANATHNHGL 514 A+L+ K SPKK + LVRG+RV+DAL+Q + KR AKTV +V+ +A NA +N GL Sbjct: 5 AILRGAKGSPKKFSAFLRLVRGLRVDDALIQCDMSPKRVAKTVAKVLQSAIGNAVNNQGL 64
Query: 515 NGDRLYVAEAFVGKGIYLKRISYHAKGRSGIMHHP 619 + +RL V+ A VGKG YL+R+S H +GR+G+MH P Sbjct: 65 DRERLVVSSATVGKGEYLRRVSIHGRGRAGVMHRP 99
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