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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956046
Clone id TST39A01NGRL0024_L11
Library
Length 781
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_L11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GAGAGAGAGATAAATATTCGACAATTGCAGAGAGGCTGGTGTGGCTCGCCTCATGCTCTG
ATTGTGCTGAAGCAGTTATCTCAGTGCTGCATTAGGGTATGGGAAATCTACTGAGTTTAA
TAGGAAACATGGTTCAGATTCTTGGACTCGCAAGCAACGCGGTTCAGGGTCTTGGAACTT
TAGCGACCTGCTTGGGCCCCGCTGGAAATAGCGTGCCACCTTTGTACCAGGCCCTCGCTA
GCGCTGGAAATCGCATCCCCCAGTCCATCAGTGTCGCTGCCCAGATCTCTGGCTATGCTA
CCCAGCCTACCTCTTTTGCCTTGAGTGCCGCCGAATGCTTCAGTCGTCGACATTGATGGG
TACAAGAAAACTCGGCCGTAATTTGCATATGTTTCTTGCACGTGATATTATGCTAAAATG
TTAGCCATTGCTCATTGAGCATCATGATTGTAATATCTTAGCTGCGATTGCTCATCACCT
TAGCGTCACAATACTATGCCCTATGATTGCATCTGCTGTTACTGTTCATAATTATTGTTT
GATGTGTCATGTACCTCAATTACTCTTAAGCTCTCACGTGCTAATGTTTGAGCTTAAGAA
AGCCGCACCCTCTTACTGAACAAAAGGCACTACAAACCTCCCCATCCGGGGGCTAAACTT
CCCCTTGGCCTCCCAATTCCCTTTGCAAAATACGCGAATGCTTCCCCCCATTAAAAAGTT
TCCAAAAATGGAGGGAAAAAAAAGGGAAGAAATTTTGAAAAAAAAAAAAAAAAAAAAAAA
A
■■Homology search results ■■ -
sp_hit_id Q5F928
Definition sp|Q5F928|UVRC_NEIG1 UvrABC system protein C OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
Align length 69
Score (bit) 33.1
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956046|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_L11, 5'
         (757 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5F928|UVRC_NEIG1 UvrABC system protein C OS=Neisseria gonorr...    33   1.7  
sp|Q05233|VG26_BPML5 Minor tail protein Gp26 OS=Mycobacterium ph...    32   4.9  
sp|Q482P5|RLMI_COLP3 Ribosomal RNA large subunit methyltransfera...    32   4.9  

>sp|Q5F928|UVRC_NEIG1 UvrABC system protein C OS=Neisseria
           gonorrhoeae (strain ATCC 700825 / FA 1090) GN=uvrC PE=3
           SV=2
          Length = 617

 Score = 33.1 bits (74), Expect = 1.7
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
 Frame = +3

Query: 21  TIAERLVWLASCSDCAEAVISVLH*GMGNLLSLIGNMVQILGLASNAV-----------Q 167
           TI ER VWL      A+  I+  H    N    I  + +ILG+ S+ +           Q
Sbjct: 352 TIGERKVWLKMAEQNAQMAITQRHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQ 411

Query: 168 GLGTLATCL 194
           G  T+A+C+
Sbjct: 412 GEATIASCV 420


>sp|Q05233|VG26_BPML5 Minor tail protein Gp26 OS=Mycobacterium phage
           L5 GN=26 PE=1 SV=2
          Length = 837

 Score = 31.6 bits (70), Expect = 4.9
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 96  GMGNL-LSLIGNMVQILGLASNAVQGLGTLATCLGPAGNSVPPLYQALAS 242
           G G+L +SL+  +  + GL  N    LGTL T L P   ++ P +Q LAS
Sbjct: 349 GFGDLFVSLMPALTSVSGLIGNV---LGTLGTQLAPIVTALTPAFQTLAS 395


>sp|Q482P5|RLMI_COLP3 Ribosomal RNA large subunit methyltransferase
           I OS=Colwellia psychrerythraea (strain 34H / ATCC
           BAA-681) GN=rlmI PE=3 SV=1
          Length = 396

 Score = 31.6 bits (70), Expect = 4.9
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 729 IFGNFLMGGSIRVF-CKGNWEAKGKFSP 649
           I GN ++G ++ VF  KGNW AKG +SP
Sbjct: 30  IKGNPMLGDTVDVFDSKGNWLAKGAYSP 57
tr_hit_id Q62EE4
Definition tr|Q62EE4|Q62EE4_BURMA Putative lipoprotein OS=Burkholderia mallei
Align length 78
Score (bit) 38.5
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956046|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_L11, 5'
         (757 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q62EE4|Q62EE4_BURMA Putative lipoprotein OS=Burkholderia mall...    39   0.49 
tr|A3MAM7|A3MAM7_BURM7 Putative lipoprotein OS=Burkholderia mall...    39   0.49 
tr|A2S061|A2S061_BURM9 Putative lipoprotein OS=Burkholderia mall...    39   0.49 
tr|A1UXZ5|A1UXZ5_BURMS Putative lipoprotein OS=Burkholderia mall...    39   0.49 
tr|A9K3A5|A9K3A5_BURMA Putative lipoprotein OS=Burkholderia mall...    39   0.49 
tr|A5XVE8|A5XVE8_BURMA Putative lipoprotein OS=Burkholderia mall...    39   0.49 
tr|A5TP26|A5TP26_BURMA Putative lipoprotein OS=Burkholderia mall...    39   0.49 
tr|A5J9F7|A5J9F7_BURMA Putative lipoprotein OS=Burkholderia mall...    39   0.49 
tr|Q63IU2|Q63IU2_BURPS Putative lipoprotein OS=Burkholderia pseu...    37   1.9  
tr|Q3JJL4|Q3JJL4_BURP1 Putative lipoprotein OS=Burkholderia pseu...    37   1.9  
tr|Q2T8A1|Q2T8A1_BURTA Lipoprotein, putative OS=Burkholderia tha...    37   1.9  
tr|A3P8Q4|A3P8Q4_BURP0 Putative uncharacterized protein OS=Burkh...    37   1.9  
tr|A3NNA4|A3NNA4_BURP6 Putative uncharacterized protein OS=Burkh...    37   1.9  
tr|B7CQI8|B7CQI8_BURPS Lipoprotein OS=Burkholderia pseudomallei ...    37   1.9  
tr|B1H933|B1H933_BURPS Lipoprotein OS=Burkholderia pseudomallei ...    37   1.9  
tr|A8KEA7|A8KEA7_BURPS Collagen triple helix repeat protein OS=B...    37   1.9  
tr|A8EN41|A8EN41_BURPS Collagen triple helix repeat protein OS=B...    37   1.9  
tr|A4LFY5|A4LFY5_BURPS Collagen triple helix repeat protein OS=B...    37   1.9  
tr|B3E8D2|B3E8D2_GEOLS Type II secretion system protein OS=Geoba...    36   2.4  
tr|B2SWM6|B2SWM6_BURPP Putative hemagglutinin-related transmembr...    36   2.4  
tr|Q4SVZ2|Q4SVZ2_TETNG Chromosome undetermined SCAF13705, whole ...    36   3.2  
tr|Q3KIK9|Q3KIK9_PSEPF Putative membrane protein OS=Pseudomonas ...    35   5.4  
tr|B2HB06|B2HB06_BURPS Lipoprotein OS=Burkholderia pseudomallei ...    35   5.4  
tr|Q146R4|Q146R4_BURXL Putative hemagglutinin-related transmembr...    35   7.1  
tr|A7HEC5|A7HEC5_ANADF Putative uncharacterized protein OS=Anaer...    34   9.2  
tr|B0VJI3|B0VJI3_9BACT Putative zinc-carboxypeptidase D (Metallo...    34   9.2  

>tr|Q62EE4|Q62EE4_BURMA Putative lipoprotein OS=Burkholderia mallei
           GN=BMAA0090 PE=4 SV=1
          Length = 584

 Score = 38.5 bits (88), Expect = 0.49
 Identities = 25/78 (32%), Positives = 36/78 (46%)
 Frame = +3

Query: 99  MGNLLSLIGNMVQILGLASNAVQGLGTLATCLGPAGNSVPPLYQALASAGNRIPQSISVA 278
           +GN +S +GN VQ LG  + A  GLGTL T   P G ++      +++ GN +     V 
Sbjct: 260 LGNAVSSLGNGVQTLGNGTAA--GLGTLGTSTNPLGPTLTSTSGVVSNVGNAVSSLGGVV 317

Query: 279 AQISGYATQPTSFALSAA 332
             I      P +  L  A
Sbjct: 318 TSIGTGPLAPVTSPLGGA 335


>tr|A3MAM7|A3MAM7_BURM7 Putative lipoprotein OS=Burkholderia mallei
           (strain NCTC 10247) GN=BMA10247_A0107 PE=4 SV=1
          Length = 336

 Score = 38.5 bits (88), Expect = 0.49
 Identities = 25/78 (32%), Positives = 36/78 (46%)
 Frame = +3

Query: 99  MGNLLSLIGNMVQILGLASNAVQGLGTLATCLGPAGNSVPPLYQALASAGNRIPQSISVA 278
           +GN +S +GN VQ LG  + A  GLGTL T   P G ++      +++ GN +     V 
Sbjct: 12  LGNAVSSLGNGVQTLGNGTAA--GLGTLGTSTNPLGPTLTSTSGVVSNVGNAVSSLGGVV 69

Query: 279 AQISGYATQPTSFALSAA 332
             I      P +  L  A
Sbjct: 70  TSIGTGPLAPVTSPLGGA 87


>tr|A2S061|A2S061_BURM9 Putative lipoprotein OS=Burkholderia mallei
           (strain NCTC 10229) GN=BMA10229_1529 PE=4 SV=1
          Length = 336

 Score = 38.5 bits (88), Expect = 0.49
 Identities = 25/78 (32%), Positives = 36/78 (46%)
 Frame = +3

Query: 99  MGNLLSLIGNMVQILGLASNAVQGLGTLATCLGPAGNSVPPLYQALASAGNRIPQSISVA 278
           +GN +S +GN VQ LG  + A  GLGTL T   P G ++      +++ GN +     V 
Sbjct: 12  LGNAVSSLGNGVQTLGNGTAA--GLGTLGTSTNPLGPTLTSTSGVVSNVGNAVSSLGGVV 69

Query: 279 AQISGYATQPTSFALSAA 332
             I      P +  L  A
Sbjct: 70  TSIGTGPLAPVTSPLGGA 87


>tr|A1UXZ5|A1UXZ5_BURMS Putative lipoprotein OS=Burkholderia mallei
           (strain SAVP1) GN=BMASAVP1_1250 PE=4 SV=1
          Length = 336

 Score = 38.5 bits (88), Expect = 0.49
 Identities = 25/78 (32%), Positives = 36/78 (46%)
 Frame = +3

Query: 99  MGNLLSLIGNMVQILGLASNAVQGLGTLATCLGPAGNSVPPLYQALASAGNRIPQSISVA 278
           +GN +S +GN VQ LG  + A  GLGTL T   P G ++      +++ GN +     V 
Sbjct: 12  LGNAVSSLGNGVQTLGNGTAA--GLGTLGTSTNPLGPTLTSTSGVVSNVGNAVSSLGGVV 69

Query: 279 AQISGYATQPTSFALSAA 332
             I      P +  L  A
Sbjct: 70  TSIGTGPLAPVTSPLGGA 87


>tr|A9K3A5|A9K3A5_BURMA Putative lipoprotein OS=Burkholderia mallei
           ATCC 10399 GN=BMA10399_B0590 PE=4 SV=1
          Length = 336

 Score = 38.5 bits (88), Expect = 0.49
 Identities = 25/78 (32%), Positives = 36/78 (46%)
 Frame = +3

Query: 99  MGNLLSLIGNMVQILGLASNAVQGLGTLATCLGPAGNSVPPLYQALASAGNRIPQSISVA 278
           +GN +S +GN VQ LG  + A  GLGTL T   P G ++      +++ GN +     V 
Sbjct: 12  LGNAVSSLGNGVQTLGNGTAA--GLGTLGTSTNPLGPTLTSTSGVVSNVGNAVSSLGGVV 69

Query: 279 AQISGYATQPTSFALSAA 332
             I      P +  L  A
Sbjct: 70  TSIGTGPLAPVTSPLGGA 87


>tr|A5XVE8|A5XVE8_BURMA Putative lipoprotein OS=Burkholderia mallei
           JHU GN=BMAJHU_E0022 PE=4 SV=1
          Length = 336

 Score = 38.5 bits (88), Expect = 0.49
 Identities = 25/78 (32%), Positives = 36/78 (46%)
 Frame = +3

Query: 99  MGNLLSLIGNMVQILGLASNAVQGLGTLATCLGPAGNSVPPLYQALASAGNRIPQSISVA 278
           +GN +S +GN VQ LG  + A  GLGTL T   P G ++      +++ GN +     V 
Sbjct: 12  LGNAVSSLGNGVQTLGNGTAA--GLGTLGTSTNPLGPTLTSTSGVVSNVGNAVSSLGGVV 69

Query: 279 AQISGYATQPTSFALSAA 332
             I      P +  L  A
Sbjct: 70  TSIGTGPLAPVTSPLGGA 87


>tr|A5TP26|A5TP26_BURMA Putative lipoprotein OS=Burkholderia mallei
           2002721280 GN=BMA721280_I0110 PE=4 SV=1
          Length = 336

 Score = 38.5 bits (88), Expect = 0.49
 Identities = 25/78 (32%), Positives = 36/78 (46%)
 Frame = +3

Query: 99  MGNLLSLIGNMVQILGLASNAVQGLGTLATCLGPAGNSVPPLYQALASAGNRIPQSISVA 278
           +GN +S +GN VQ LG  + A  GLGTL T   P G ++      +++ GN +     V 
Sbjct: 12  LGNAVSSLGNGVQTLGNGTAA--GLGTLGTSTNPLGPTLTSTSGVVSNVGNAVSSLGGVV 69

Query: 279 AQISGYATQPTSFALSAA 332
             I      P +  L  A
Sbjct: 70  TSIGTGPLAPVTSPLGGA 87


>tr|A5J9F7|A5J9F7_BURMA Putative lipoprotein OS=Burkholderia mallei
           FMH GN=BMAFMH_K0022 PE=4 SV=1
          Length = 336

 Score = 38.5 bits (88), Expect = 0.49
 Identities = 25/78 (32%), Positives = 36/78 (46%)
 Frame = +3

Query: 99  MGNLLSLIGNMVQILGLASNAVQGLGTLATCLGPAGNSVPPLYQALASAGNRIPQSISVA 278
           +GN +S +GN VQ LG  + A  GLGTL T   P G ++      +++ GN +     V 
Sbjct: 12  LGNAVSSLGNGVQTLGNGTAA--GLGTLGTSTNPLGPTLTSTSGVVSNVGNAVSSLGGVV 69

Query: 279 AQISGYATQPTSFALSAA 332
             I      P +  L  A
Sbjct: 70  TSIGTGPLAPVTSPLGGA 87


>tr|Q63IU2|Q63IU2_BURPS Putative lipoprotein OS=Burkholderia
           pseudomallei GN=BPSS1974 PE=4 SV=1
          Length = 572

 Score = 36.6 bits (83), Expect = 1.9
 Identities = 22/63 (34%), Positives = 32/63 (50%)
 Frame = +3

Query: 99  MGNLLSLIGNMVQILGLASNAVQGLGTLATCLGPAGNSVPPLYQALASAGNRIPQSISVA 278
           +GN +S +GN VQ LG  + A  GLGTL T   P G ++      +++ GN +     V 
Sbjct: 245 LGNAVSSLGNGVQTLGNGTAA--GLGTLGTSTNPLGPTLTSTSGVVSNVGNAVSSLGGVV 302

Query: 279 AQI 287
             I
Sbjct: 303 TSI 305


>tr|Q3JJL4|Q3JJL4_BURP1 Putative lipoprotein OS=Burkholderia
           pseudomallei (strain 1710b) GN=BURPS1710b_A1081 PE=4
           SV=1
          Length = 587

 Score = 36.6 bits (83), Expect = 1.9
 Identities = 22/63 (34%), Positives = 32/63 (50%)
 Frame = +3

Query: 99  MGNLLSLIGNMVQILGLASNAVQGLGTLATCLGPAGNSVPPLYQALASAGNRIPQSISVA 278
           +GN +S +GN VQ LG  + A  GLGTL T   P G ++      +++ GN +     V 
Sbjct: 245 LGNAVSSLGNGVQTLGNGTAA--GLGTLGTSTNPLGPTLTSTSGVVSNVGNAVSSLGGVV 302

Query: 279 AQI 287
             I
Sbjct: 303 TSI 305