NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956048
Clone id TST39A01NGRL0024_L13
Library
Length 531
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_L13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGCCTGGGCATTTGGAAATGCTCGTTAAGCCAGGTTAAGGGTCCCCTTCATCCTCCACAA
GGAGCTTTGTACTTCATACCTCTGCGGAGAGGCAGCTATGGAACCTCGTAAAATCCCTTC
ATCTGCACGTGCTGAGCTTTCCCATGACAGGAGTTCCTCTCATAGCAGGGTCAAGAAACA
GAGCCTGTCTTCAATGGATCTGAACGGCATCAAGATTGGGCTTTCCAGTACTACAAGAAA
CACAGGTACAGGGGGTGCTTGCGAGGATGTGAAACTAAGTGAGGCAGAAAGCTCACAGGC
AACCTCTAGTACCACTCTGTCAAATGCCAAGCCTAGCCAGAGCAGCAGCAAAAGCAGTGT
AAGCAAGTCCAGCACTAGCTCCGAAGAGAGCGATGTCAGCAATGATAGTCTCTACACAAG
CTTTATCACTGCATTGAGCAAGCCACACAAGGCTAATGATCCACGGTGGGCTGCCATCCA
AGCGGCACATGTGAAAGAGGGAACTCTCACATTCAATCACTTTCGGCTTGC
■■Homology search results ■■ -
sp_hit_id P15792
Definition sp|P15792|KPK1_PHAVU Protein kinase PVPK-1 OS=Phaseolus vulgaris
Align length 38
Score (bit) 47.4
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956048|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_L13, 5'
         (531 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P15792|KPK1_PHAVU Protein kinase PVPK-1 OS=Phaseolus vulgaris...    47   4e-05
sp|Q0DCT8|G11A_ORYSJ Protein kinase G11A OS=Oryza sativa subsp. ...    46   1e-04
sp|A2YBX5|G11A_ORYSI Protein kinase G11A OS=Oryza sativa subsp. ...    46   1e-04
sp|O13636|TIM50_SCHPO Mitochondrial import inner membrane transl...    31   4.2  
sp|Q9C0B9|ZCHC2_HUMAN Zinc finger CCHC domain-containing protein...    30   9.4  
sp|Q4FQB2|CMOB_PSYA2 tRNA (mo5U34)-methyltransferase OS=Psychrob...    30   9.5  

>sp|P15792|KPK1_PHAVU Protein kinase PVPK-1 OS=Phaseolus vulgaris
           PE=2 SV=1
          Length = 609

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 21/38 (55%), Positives = 25/38 (65%)
 Frame = +2

Query: 416 TSFITALSKPHKANDPRWAAIQAAHVKEGTLTFNHFRL 529
           +S  + L KPHKAND RW AIQA   ++G L   HFRL
Sbjct: 194 SSLSSVLYKPHKANDIRWEAIQAVRTRDGMLEMRHFRL 231


>sp|Q0DCT8|G11A_ORYSJ Protein kinase G11A OS=Oryza sativa subsp.
           japonica GN=Os06g0291600 PE=2 SV=1
          Length = 589

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 19/37 (51%), Positives = 27/37 (72%)
 Frame = +2

Query: 419 SFITALSKPHKANDPRWAAIQAAHVKEGTLTFNHFRL 529
           S I++++KPHKAND RW AIQ    ++G L  +HF+L
Sbjct: 161 SSISSVTKPHKANDSRWEAIQMIRTRDGILGLSHFKL 197


>sp|A2YBX5|G11A_ORYSI Protein kinase G11A OS=Oryza sativa subsp.
           indica GN=OsI_021818 PE=2 SV=1
          Length = 589

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 19/37 (51%), Positives = 27/37 (72%)
 Frame = +2

Query: 419 SFITALSKPHKANDPRWAAIQAAHVKEGTLTFNHFRL 529
           S I++++KPHKAND RW AIQ    ++G L  +HF+L
Sbjct: 161 SSISSVTKPHKANDSRWEAIQMIRTRDGILGLSHFKL 197


>sp|O13636|TIM50_SCHPO Mitochondrial import inner membrane
           translocase subunit tim50 OS=Schizosaccharomyces pombe
           GN=tim50 PE=3 SV=1
          Length = 452

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +2

Query: 11  FGNAR*ARLRVPFI--LHKELCTSYLCGEAAMEPRKIPSSARAELSHDRSSSHSRVKKQS 184
           F N R AR R PF+  + K   T     +   +  KI  +A+ E+  D SS    + K+S
Sbjct: 8   FRNLRLARPR-PFLPLVGKRFVTEKSQSQEEKDTSKITENAKEEVKRDTSS----LAKES 62

Query: 185 LSSMDLNGI 211
           L  +DLNG+
Sbjct: 63  LKLLDLNGL 71


>sp|Q9C0B9|ZCHC2_HUMAN Zinc finger CCHC domain-containing protein 2
           OS=Homo sapiens GN=ZCCHC2 PE=1 SV=6
          Length = 1178

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 83  CGEAAMEPRKIPSSARAELSHD-RSSSHSRVKKQSLSSMDLNGIKIGLSSTTRNTGTGGA 259
           CGE + E    PSS R    HD R S  S  +K      D N    G  STTR TG G  
Sbjct: 628 CGETSSESYSSPSSPR----HDGRESFESEEEKD--RDTDSNSEDSGNPSTTRFTGYGSV 681

Query: 260 CEDV 271
            + V
Sbjct: 682 NQTV 685


>sp|Q4FQB2|CMOB_PSYA2 tRNA (mo5U34)-methyltransferase
           OS=Psychrobacter arcticus (strain DSM 17307 / 273-4)
           GN=cmoB PE=3 SV=1
          Length = 350

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 166 QGQETEPVFNGSERHQDWAFQYYKKH 243
           +G++ EP+F  +E H DW +Q    H
Sbjct: 112 EGEQAEPIFIDTEWHSDWKWQRVAPH 137
tr_hit_id Q9FG74
Definition tr|Q9FG74|Q9FG74_ARATH Serine/threonine-specific protein kinase ATPK64 OS=Arabidopsis thaliana
Align length 38
Score (bit) 52.8
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956048|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_L13, 5'
         (531 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9FG74|Q9FG74_ARATH Serine/threonine-specific protein kinase ...    53   1e-05
tr|Q41493|Q41493_SOLTU Stpk1 protein kinase OS=Solanum tuberosum...    53   1e-05
tr|Q39031|Q39031_ARATH Protein kinase OS=Arabidopsis thaliana GN...    53   1e-05
tr|A7Q9B0|A7Q9B0_VITVI Chromosome chr19 scaffold_66, whole genom...    52   2e-05
tr|B8LKY3|B8LKY3_PICSI Putative uncharacterized protein OS=Picea...    52   2e-05
tr|A7R511|A7R511_VITVI Chromosome undetermined scaffold_831, who...    52   2e-05
tr|A7R020|A7R020_VITVI Chromosome undetermined scaffold_296, who...    52   2e-05
tr|Q8W4K8|Q8W4K8_ARATH Protein kinase 5 OS=Arabidopsis thaliana ...    51   3e-05
tr|Q39183|Q39183_ARATH Serine/threonine protein kinase (AT5g4775...    51   3e-05
tr|Q6K1W7|Q6K1W7_ORYSJ Os09g0258500 protein OS=Oryza sativa subs...    49   2e-04
tr|A3BWK8|A3BWK8_ORYSJ Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|A2YZ22|A2YZ22_ORYSI Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|Q9SUA3|Q9SUA3_ARATH Putative uncharacterized protein AT4g2661...    49   2e-04
tr|Q651X1|Q651X1_ORYSJ Os09g0478500 protein OS=Oryza sativa subs...    49   2e-04
tr|A3BZY3|A3BZY3_ORYSJ Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|A2Z2D5|A2Z2D5_ORYSI Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|Q0WL51|Q0WL51_ARATH Putative uncharacterized protein At4g2661...    48   3e-04
tr|B6SKG1|B6SKG1_MAIZE Protein kinase G11A OS=Zea mays PE=2 SV=1       48   4e-04
tr|B4FW82|B4FW82_MAIZE Putative uncharacterized protein OS=Zea m...    48   4e-04
tr|Q7XU96|Q7XU96_ORYSA OSJNBa0079A21.12 protein OS=Oryza sativa ...    47   5e-04
tr|Q0JBA2|Q0JBA2_ORYSJ Os04g0546300 protein OS=Oryza sativa subs...    47   5e-04
tr|Q01J16|Q01J16_ORYSA OSIGBa0101C23.11 protein OS=Oryza sativa ...    47   5e-04
tr|B8B0T7|B8B0T7_ORYSI Putative uncharacterized protein OS=Oryza...    46   0.001
tr|B7EQ74|B7EQ74_ORYSJ cDNA clone:J023063D14, full insert sequen...    46   0.001
tr|A9TTR4|A9TTR4_PHYPA Predicted protein (Fragment) OS=Physcomit...    46   0.001
tr|A9TGB3|A9TGB3_PHYPA Predicted protein (Fragment) OS=Physcomit...    46   0.001
tr|Q6Z5K6|Q6Z5K6_ORYSJ Os02g0725000 protein OS=Oryza sativa subs...    45   0.002
tr|A2X946|A2X946_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|B6U4S9|B6U4S9_MAIZE Protein kinase G11A OS=Zea mays PE=2 SV=1       45   0.002
tr|B6SY10|B6SY10_MAIZE Protein kinase G11A OS=Zea mays PE=2 SV=1       45   0.002

>tr|Q9FG74|Q9FG74_ARATH Serine/threonine-specific protein kinase
           ATPK64 OS=Arabidopsis thaliana GN=At5g55910 PE=1 SV=1
          Length = 498

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 23/38 (60%), Positives = 28/38 (73%)
 Frame = +2

Query: 416 TSFITALSKPHKANDPRWAAIQAAHVKEGTLTFNHFRL 529
           +SF ++++KPHKAND RW AIQA   K G L  NHFRL
Sbjct: 74  SSFSSSINKPHKANDVRWEAIQAVRTKHGGLGLNHFRL 111


>tr|Q41493|Q41493_SOLTU Stpk1 protein kinase OS=Solanum tuberosum
           PE=4 SV=1
          Length = 631

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 23/34 (67%), Positives = 25/34 (73%)
 Frame = +2

Query: 428 TALSKPHKANDPRWAAIQAAHVKEGTLTFNHFRL 529
           T + KPHKAND RW AIQ    +EGTL FNHFRL
Sbjct: 211 TTVYKPHKANDTRWDAIQVIRAREGTLGFNHFRL 244


>tr|Q39031|Q39031_ARATH Protein kinase OS=Arabidopsis thaliana
           GN=ATPK64 PE=2 SV=1
          Length = 498

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 23/38 (60%), Positives = 28/38 (73%)
 Frame = +2

Query: 416 TSFITALSKPHKANDPRWAAIQAAHVKEGTLTFNHFRL 529
           +SF ++++KPHKAND RW AIQA   K G L  NHFRL
Sbjct: 74  SSFSSSINKPHKANDVRWEAIQAVRTKHGGLGLNHFRL 111


>tr|A7Q9B0|A7Q9B0_VITVI Chromosome chr19 scaffold_66, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00033403001
           PE=4 SV=1
          Length = 446

 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 22/38 (57%), Positives = 27/38 (71%)
 Frame = +2

Query: 416 TSFITALSKPHKANDPRWAAIQAAHVKEGTLTFNHFRL 529
           +S  +++SKPHKAND RW AIQ    K+G L  NHFRL
Sbjct: 17  SSLSSSISKPHKANDSRWEAIQVVRAKDGALGLNHFRL 54


>tr|B8LKY3|B8LKY3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 545

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 22/38 (57%), Positives = 29/38 (76%)
 Frame = +2

Query: 416 TSFITALSKPHKANDPRWAAIQAAHVKEGTLTFNHFRL 529
           +S  ++L+KPHK NDPRW AIQA  V++G L  +HFRL
Sbjct: 121 SSLSSSLNKPHKGNDPRWDAIQAVKVRDGFLGLSHFRL 158


>tr|A7R511|A7R511_VITVI Chromosome undetermined scaffold_831, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00004851001 PE=4 SV=1
          Length = 355

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = +2

Query: 416 TSFITALSKPHKANDPRWAAIQAAHVKEGTLTFNHFRL 529
           +SF ++++KPHKAND RW AIQA   ++G L  +HFRL
Sbjct: 17  SSFSSSINKPHKANDSRWEAIQAVRARDGVLGLSHFRL 54


>tr|A7R020|A7R020_VITVI Chromosome undetermined scaffold_296, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00010938001 PE=4 SV=1
          Length = 415

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = +2

Query: 416 TSFITALSKPHKANDPRWAAIQAAHVKEGTLTFNHFRL 529
           +SF ++++KPHKAND RW AIQA   ++G L  +HFRL
Sbjct: 17  SSFSSSINKPHKANDSRWEAIQAVRARDGVLGLSHFRL 54


>tr|Q8W4K8|Q8W4K8_ARATH Protein kinase 5 OS=Arabidopsis thaliana
           GN=MCA23.7 PE=2 SV=1
          Length = 586

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 22/38 (57%), Positives = 29/38 (76%)
 Frame = +2

Query: 416 TSFITALSKPHKANDPRWAAIQAAHVKEGTLTFNHFRL 529
           +SF + ++KPHKAND RW AIQA  V++G L  +HFRL
Sbjct: 156 SSFSSTVNKPHKANDLRWEAIQAVRVRDGLLGLSHFRL 193


>tr|Q39183|Q39183_ARATH Serine/threonine protein kinase
           (AT5g47750/MCA23_7) (Protein kinase 5) OS=Arabidopsis
           thaliana GN=At5g47750 PE=1 SV=1
          Length = 586

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 22/38 (57%), Positives = 29/38 (76%)
 Frame = +2

Query: 416 TSFITALSKPHKANDPRWAAIQAAHVKEGTLTFNHFRL 529
           +SF + ++KPHKAND RW AIQA  V++G L  +HFRL
Sbjct: 156 SSFSSTVNKPHKANDLRWEAIQAVRVRDGLLGLSHFRL 193


>tr|Q6K1W7|Q6K1W7_ORYSJ Os09g0258500 protein OS=Oryza sativa subsp.
           japonica GN=B1279D09.7 PE=4 SV=1
          Length = 567

 Score = 48.9 bits (115), Expect = 2e-04
 Identities = 21/38 (55%), Positives = 26/38 (68%)
 Frame = +2

Query: 416 TSFITALSKPHKANDPRWAAIQAAHVKEGTLTFNHFRL 529
           +S  ++ SKPHK+ND RW AIQ    KEG+L   HFRL
Sbjct: 144 SSICSSASKPHKSNDSRWEAIQMVRTKEGSLGLGHFRL 181