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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956057
Clone id TST39A01NGRL0024_L22
Library
Length 272
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_L22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTCTATCATTGTGGCTTGACTAGCTTTGGATCAGCTGACCGCGCCGTAAAGACTCCCGTG
GGTTCTACTGCAGCGCTCGTTGAAGCTTATAACCGCGCCGCATTTACACACCCTCGATCA
AAGTCCTTGTCAACATGGACATGAGCTTACATTCAATGGAGGTTGTCAATAGACTCACAA
CGCATGTAGACTTACCTACAGAGTTAGTACTCATGTATATTTCCAACTGTACATCTTCTT
GCGAAAATATCAAGGACAAGTACATGCAAAAT
■■Homology search results ■■ -
sp_hit_id Q9CWN7
Definition sp|Q9CWN7|CB029_MOUSE Uncharacterized protein C2orf29 homolog OS=Mus musculus
Align length 55
Score (bit) 87.4
E-value 2.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956057|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_L22, 5'
         (272 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CWN7|CB029_MOUSE Uncharacterized protein C2orf29 homolog OS...    87   2e-17
sp|Q9UKZ1|CB029_HUMAN Uncharacterized protein C2orf29 OS=Homo sa...    87   2e-17
sp|Q7S3S2|MIA40_NEUCR Mitochondrial intermembrane space import a...    31   1.7  
sp|P14232|TGA1A_TOBAC TGACG-sequence-specific DNA-binding protei...    30   3.8  
sp|P13429|SFAG_ECOL5 S-fimbrial adhesin protein sfaG OS=Escheric...    30   4.9  
sp|Q54HP3|DRG1_DICDI Developmentally-regulated GTP-binding prote...    30   4.9  
sp|Q6CUC6|TAF4_KLULA Transcription initiation factor TFIID subun...    29   6.4  
sp|A9WSW6|EFG_RENSM Elongation factor G OS=Renibacterium salmoni...    29   6.4  

>sp|Q9CWN7|CB029_MOUSE Uncharacterized protein C2orf29 homolog
           OS=Mus musculus GN=D1Bwg0212e PE=2 SV=1
          Length = 505

 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 42/55 (76%), Positives = 45/55 (81%)
 Frame = +3

Query: 108 TPSIKVLVNMDMSLHSMEVVNRLTTHVDLPTELVLMYISNCTSSCENIKDKYMQN 272
           T    VLVNMDMSLHSMEVVNRLTT VDLP E + +YISNC S+CE IKDKYMQN
Sbjct: 387 TEYFSVLVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISTCEQIKDKYMQN 441


>sp|Q9UKZ1|CB029_HUMAN Uncharacterized protein C2orf29 OS=Homo
           sapiens GN=C2orf29 PE=1 SV=1
          Length = 510

 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 42/55 (76%), Positives = 45/55 (81%)
 Frame = +3

Query: 108 TPSIKVLVNMDMSLHSMEVVNRLTTHVDLPTELVLMYISNCTSSCENIKDKYMQN 272
           T    VLVNMDMSLHSMEVVNRLTT VDLP E + +YISNC S+CE IKDKYMQN
Sbjct: 392 TEYFSVLVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISTCEQIKDKYMQN 446


>sp|Q7S3S2|MIA40_NEUCR Mitochondrial intermembrane space import and
           assembly protein 40 OS=Neurospora crassa GN=mia-40 PE=3
           SV=1
          Length = 298

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 1   VYHCGLTSFGSADRAVKTPVGSTAALVEAYNRAAFTHPRSKSLSTWT*AYIQWRLSI 171
           +Y   L    SA RA+++    +A +     R A T    K  STW  A ++W L++
Sbjct: 1   MYRTALRPSQSALRAIRSTTSPSALVSSGARRFASTTSAPKKKSTWKGAAVRWGLAV 57


>sp|P14232|TGA1A_TOBAC TGACG-sequence-specific DNA-binding protein
           TGA-1A OS=Nicotiana tabacum GN=TGA1A PE=1 SV=1
          Length = 359

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 159 EVVNRLTTHVDLPTELVLMYISNCTSSCENIKDKYMQ 269
           E++  LT H++L TE  L  + N T SC+  +D   Q
Sbjct: 229 ELLKVLTPHLELLTEQQLREVCNLTQSCQQAEDALSQ 265


>sp|P13429|SFAG_ECOL5 S-fimbrial adhesin protein sfaG OS=Escherichia
           coli O6:K15:H31 (strain 536 / UPEC) GN=sfaG PE=3 SV=1
          Length = 175

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
 Frame = +1

Query: 1   VYHCGLTSFGSADRAVK-----TPVGSTAALVE 84
           V+H GLTS GSA RAVK     TP    A L++
Sbjct: 75  VFHVGLTSCGSAVRAVKLTFTGTPDNQEAGLIQ 107


>sp|Q54HP3|DRG1_DICDI Developmentally-regulated GTP-binding protein
           1 homolog OS=Dictyostelium discoideum GN=drg1 PE=3 SV=1
          Length = 370

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -2

Query: 202 SVGKSTCVVSLLTTSIECKLMSMLTRTLIEGV*MRRGYKLQ 80
           SVGKST +  L  TS E       T T I GV   +G K+Q
Sbjct: 74  SVGKSTLLTKLTGTSSEVASYEFTTLTCIPGVINYKGAKIQ 114


>sp|Q6CUC6|TAF4_KLULA Transcription initiation factor TFIID subunit
           4 OS=Kluyveromyces lactis GN=TAF4 PE=3 SV=1
          Length = 366

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -2

Query: 193 KSTCVVSLLTTSIECKLMSMLTRTLIEGV*MRRGYKLQRALQ*NPRESLR 44
           K+T ++ L++T+ E  +  ++T +LI  +  R+G KL    +     SLR
Sbjct: 188 KNTDILGLMSTACELYMRDVITNSLILSIHRRKGVKLNTGRRSEVSRSLR 237


>sp|A9WSW6|EFG_RENSM Elongation factor G OS=Renibacterium
           salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589)
           GN=fusA PE=3 SV=1
          Length = 704

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 191 LTYRVSTHVYFQLYIFLRKYQGQV 262
           L ++V+TH +F   +F+R Y GQ+
Sbjct: 320 LAFKVATHPFFGQLVFIRVYSGQI 343
tr_hit_id A9T502
Definition tr|A9T502|A9T502_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 55
Score (bit) 94.0
E-value 2.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956057|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_L22, 5'
         (272 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T502|A9T502_PHYPA Predicted protein OS=Physcomitrella paten...    94   2e-18
tr|A9SFI3|A9SFI3_PHYPA Predicted protein OS=Physcomitrella paten...    92   7e-18
tr|A7QR14|A7QR14_VITVI Chromosome undetermined scaffold_147, who...    88   9e-18
tr|A9NXQ8|A9NXQ8_PICSI Putative uncharacterized protein OS=Picea...    92   1e-17
tr|B6MF65|B6MF65_BRAFL Putative uncharacterized protein OS=Branc...    91   3e-17
tr|B6MDT4|B6MDT4_BRAFL Putative uncharacterized protein OS=Branc...    91   3e-17
tr|A9SIG7|A9SIG7_PHYPA Predicted protein OS=Physcomitrella paten...    88   5e-17
tr|A4QP78|A4QP78_DANRE Zgc:163002 protein OS=Danio rerio GN=zgc:...    87   3e-16
tr|Q8C9T0|Q8C9T0_MOUSE Putative uncharacterized protein (Fragmen...    87   3e-16
tr|B0BNA9|B0BNA9_RAT Similar to DNA segment, Chr 1, Brigham & Wo...    87   3e-16
tr|A9UP30|A9UP30_MONBE Predicted protein OS=Monosiga brevicollis...    87   3e-16
tr|B3KNB0|B3KNB0_HUMAN cDNA FLJ14159 fis, clone NT2RM2001360, hi...    87   3e-16
tr|B7QNU9|B7QNU9_IXOSC Putative uncharacterized protein (Fragmen...    86   9e-16
tr|A7RPS5|A7RPS5_NEMVE Predicted protein OS=Nematostella vectens...    85   2e-15
tr|Q16W68|Q16W68_AEDAE Putative uncharacterized protein OS=Aedes...    85   2e-15
tr|B0WAH0|B0WAH0_CULQU Putative uncharacterized protein OS=Culex...    84   3e-15
tr|B8BNK5|B8BNK5_ORYSI Putative uncharacterized protein OS=Oryza...    84   4e-15
tr|Q2QWE6|Q2QWE6_ORYSJ Expressed protein (Putative uncharacteriz...    84   5e-15
tr|Q0IPI4|Q0IPI4_ORYSJ Os12g0197900 protein (Fragment) OS=Oryza ...    84   5e-15
tr|B3S5S5|B3S5S5_TRIAD Putative uncharacterized protein OS=Trich...    82   1e-14
tr|B4LP10|B4LP10_DROVI GJ20443 OS=Drosophila virilis GN=GJ20443 ...    80   5e-14
tr|B4KLX2|B4KLX2_DROMO GI20696 OS=Drosophila mojavensis GN=GI206...    80   5e-14
tr|B4J671|B4J671_DROGR GH21707 OS=Drosophila grimshawi GN=GH2170...    80   5e-14
tr|Q0ITL9|Q0ITL9_ORYSJ Os11g0240900 protein OS=Oryza sativa subs...    79   6e-14
tr|B8BJU8|B8BJU8_ORYSI Putative uncharacterized protein OS=Oryza...    79   6e-14
tr|A3CA32|A3CA32_ORYSJ Putative uncharacterized protein OS=Oryza...    79   6e-14
tr|Q9W1C6|Q9W1C6_DROME CG13567, isoform B OS=Drosophila melanoga...    80   7e-14
tr|Q8MLP8|Q8MLP8_DROME CG13567, isoform A OS=Drosophila melanoga...    80   7e-14
tr|B4QBH3|B4QBH3_DROSI GD24978 OS=Drosophila simulans GN=GD24978...    80   7e-14
tr|B4PAS3|B4PAS3_DROYA GE11493 OS=Drosophila yakuba GN=GE11493 P...    80   7e-14

>tr|A9T502|A9T502_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_168095 PE=4 SV=1
          Length = 430

 Score = 94.0 bits (232), Expect(2) = 2e-18
 Identities = 46/55 (83%), Positives = 48/55 (87%)
 Frame = +3

Query: 108 TPSIKVLVNMDMSLHSMEVVNRLTTHVDLPTELVLMYISNCTSSCENIKDKYMQN 272
           T   K+LVNMD+SLHSMEVVNRLTT VDLPTE V MYISNC SSCENIKDKYMQN
Sbjct: 323 TDYFKMLVNMDISLHSMEVVNRLTTTVDLPTEFVHMYISNCISSCENIKDKYMQN 377



 Score = 21.6 bits (44), Expect(2) = 2e-18
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 1   VYHCGLTSFGSADRAVKTPVGSTAALVEAYNRAAFT 108
           V+HCGLT     +     P  + A L++  N    T
Sbjct: 288 VFHCGLTPRRLPELVDHNPFIAVAVLLKLMNSNQIT 323


>tr|A9SFI3|A9SFI3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_184387 PE=4 SV=1
          Length = 430

 Score = 92.0 bits (227), Expect(2) = 7e-18
 Identities = 44/55 (80%), Positives = 49/55 (89%)
 Frame = +3

Query: 108 TPSIKVLVNMDMSLHSMEVVNRLTTHVDLPTELVLMYISNCTSSCENIKDKYMQN 272
           T  +K+LVNMD+SLHSMEVVNRLT+ VDLPTE V MYISNC SSCENIKDKY+QN
Sbjct: 323 TDYLKMLVNMDISLHSMEVVNRLTSTVDLPTEFVHMYISNCISSCENIKDKYLQN 377



 Score = 21.9 bits (45), Expect(2) = 7e-18
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 1   VYHCGLTSFGSADRAVKTPVGSTAALVEAYNRAAFT 108
           VYHCGLT     +    +P  +   L++  N    T
Sbjct: 288 VYHCGLTPRRLPELVNNSPFIAVEVLLKLMNSNQIT 323


>tr|A7QR14|A7QR14_VITVI Chromosome undetermined scaffold_147, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00003636001 PE=4 SV=1
          Length = 184

 Score = 87.8 bits (216), Expect(2) = 9e-18
 Identities = 41/51 (80%), Positives = 47/51 (92%)
 Frame = +3

Query: 120 KVLVNMDMSLHSMEVVNRLTTHVDLPTELVLMYISNCTSSCENIKDKYMQN 272
           +VLV+MDMSLHSMEVVNRLTT V+LPTE V MYI+NC SSC+NIKD+YMQN
Sbjct: 81  RVLVSMDMSLHSMEVVNRLTTAVELPTEFVHMYITNCISSCQNIKDRYMQN 131



 Score = 25.8 bits (55), Expect(2) = 9e-18
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 1   VYHCGLTSFGSADRAVKTPVGSTAALVEAYNRA 99
           VYHCGLT     D     P+ +   L++  N A
Sbjct: 42  VYHCGLTPRKLPDLVENNPLIAVEVLIKLINSA 74


>tr|A9NXQ8|A9NXQ8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 433

 Score = 92.0 bits (227), Expect(2) = 1e-17
 Identities = 44/51 (86%), Positives = 46/51 (90%)
 Frame = +3

Query: 120 KVLVNMDMSLHSMEVVNRLTTHVDLPTELVLMYISNCTSSCENIKDKYMQN 272
           KVLVNMDMSLHSMEVVNRLTT VDLPT+ +  YISNC SSCENIKDKYMQN
Sbjct: 331 KVLVNMDMSLHSMEVVNRLTTAVDLPTQFIHTYISNCISSCENIKDKYMQN 381



 Score = 21.2 bits (43), Expect(2) = 1e-17
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 1   VYHCGLTSFGSADRAVKTPVGSTAALVEAYN 93
           VYHCGL+     +     PV +   L++  N
Sbjct: 292 VYHCGLSPRLLPELVENNPVIAVEVLLKLMN 322


>tr|B6MF65|B6MF65_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_122946 PE=4 SV=1
          Length = 446

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 44/55 (80%), Positives = 47/55 (85%)
 Frame = +3

Query: 108 TPSIKVLVNMDMSLHSMEVVNRLTTHVDLPTELVLMYISNCTSSCENIKDKYMQN 272
           T    VLVNM+MSLHSMEVVNRLTT VDLPTE V +YISNC S+CENIKDKYMQN
Sbjct: 330 TEYFSVLVNMEMSLHSMEVVNRLTTAVDLPTEFVHLYISNCISTCENIKDKYMQN 384


>tr|B6MDT4|B6MDT4_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_224116 PE=4 SV=1
          Length = 441

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 44/55 (80%), Positives = 47/55 (85%)
 Frame = +3

Query: 108 TPSIKVLVNMDMSLHSMEVVNRLTTHVDLPTELVLMYISNCTSSCENIKDKYMQN 272
           T    VLVNM+MSLHSMEVVNRLTT VDLPTE V +YISNC S+CENIKDKYMQN
Sbjct: 325 TEYFSVLVNMEMSLHSMEVVNRLTTAVDLPTEFVHLYISNCISTCENIKDKYMQN 379


>tr|A9SIG7|A9SIG7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_185306 PE=4 SV=1
          Length = 430

 Score = 88.2 bits (217), Expect(2) = 5e-17
 Identities = 42/51 (82%), Positives = 46/51 (90%)
 Frame = +3

Query: 120 KVLVNMDMSLHSMEVVNRLTTHVDLPTELVLMYISNCTSSCENIKDKYMQN 272
           K+LVNMD+SLHSMEVVNRLTT VDLPTE V MY+SNC SSCENIKDK +QN
Sbjct: 327 KMLVNMDISLHSMEVVNRLTTAVDLPTEFVHMYVSNCISSCENIKDKCLQN 377



 Score = 22.7 bits (47), Expect(2) = 5e-17
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 1   VYHCGLTS 24
           VYHCGLTS
Sbjct: 288 VYHCGLTS 295


>tr|A4QP78|A4QP78_DANRE Zgc:163002 protein OS=Danio rerio
           GN=zgc:163002 PE=2 SV=1
          Length = 445

 Score = 87.4 bits (215), Expect = 3e-16
 Identities = 42/55 (76%), Positives = 45/55 (81%)
 Frame = +3

Query: 108 TPSIKVLVNMDMSLHSMEVVNRLTTHVDLPTELVLMYISNCTSSCENIKDKYMQN 272
           T    VLVNMDMSLHSMEVVNRLTT VDLP E + +YISNC S+CE IKDKYMQN
Sbjct: 327 TEYFSVLVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISTCEQIKDKYMQN 381


>tr|Q8C9T0|Q8C9T0_MOUSE Putative uncharacterized protein (Fragment)
           OS=Mus musculus GN=D1Bwg0212e PE=2 SV=1
          Length = 292

 Score = 87.4 bits (215), Expect = 3e-16
 Identities = 42/55 (76%), Positives = 45/55 (81%)
 Frame = +3

Query: 108 TPSIKVLVNMDMSLHSMEVVNRLTTHVDLPTELVLMYISNCTSSCENIKDKYMQN 272
           T    VLVNMDMSLHSMEVVNRLTT VDLP E + +YISNC S+CE IKDKYMQN
Sbjct: 174 TEYFSVLVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISTCEQIKDKYMQN 228


>tr|B0BNA9|B0BNA9_RAT Similar to DNA segment, Chr 1, Brigham &
           Womens Genetics 0212 expressed (Similar to DNA segment,
           Chr 1, Brigham & Womens Genetics 0212 expressed
           (Predicted), isoform CRA_a) OS=Rattus norvegicus
           GN=RGD1560909 PE=2 SV=1
          Length = 504

 Score = 87.4 bits (215), Expect = 3e-16
 Identities = 42/55 (76%), Positives = 45/55 (81%)
 Frame = +3

Query: 108 TPSIKVLVNMDMSLHSMEVVNRLTTHVDLPTELVLMYISNCTSSCENIKDKYMQN 272
           T    VLVNMDMSLHSMEVVNRLTT VDLP E + +YISNC S+CE IKDKYMQN
Sbjct: 386 TEYFSVLVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISTCEQIKDKYMQN 440