DK956062 |
Clone id |
TST39A01NGRL0024_M04 |
Library |
TST39 |
Length |
651 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_M04. 5' end sequence. |
Accession |
DK956062 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GCTTGATAGACGAAGCTTTGCCTGCTTGAGTAGACGATAGTTTTACGCACTCTTCCTCGT AACGCGAATATCGGGATGGCTGCAACAGCAGAAGAAGACAGTGCAGTAAAGGAGCCCCTC GACCTCATCAGGCTTAGCCTCGACGAGAGGATTTATGTGAAGCTTCGATCAGACAGGGAG CTACGAGGGAAGCTTCATGCATATGATCAGCACTTGAATATGATCCTTGGAGACGTAGAA GAAGTCATCACCTCTGTGGAAATTGACGATGAGACATACGAAGAAATTGTTCGGACCAGC AAGCGGCAGATTCCCTTCCTATTTGTCCGTGGAGATGGTGTTATTCTTGTGTCCCCTCCT CTGCGGACATCCTGATCCAATGTTTCAGTGAGCAAAGCTTGATTGGGTTCCATTAGCACA GAGAGTGTATGGATTAAGTGTCACATCTAGGACATGTTTGTACAATTACTACGAGCTTGG GTTTAAACCTCTGAAACAGTTTTGAGGTGTTGTGCATTACAGAAATTAGTGGCCGGGGAT GGCCATTGCACTGAAATAGAATGATAGATGGCAGCCATGATCTTTGTCGTATTTTGGAGA AAGAGTAATATCAATTTCTAATTTTTGTTAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P62311 |
Definition |
sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus |
Align length |
89 |
Score (bit) |
151.0 |
E-value |
3.0e-36 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q5N9F1 |
Definition |
tr|Q5N9F1|Q5N9F1_ORYSJ cDNA clone:001-012-B01, full insert sequence OS=Oryza sativa subsp. japonica |
Align length |
98 |
Score (bit) |
179.0 |
E-value |
2.0e-43 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956062|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_M04, 5' (629 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q5N9F1|Q5N9F1_ORYSJ cDNA clone:001-012-B01, full insert seque... 179 2e-43 tr|A2WXB5|A2WXB5_ORYSI Putative uncharacterized protein OS=Oryza... 179 2e-43 tr|B8LNL7|B8LNL7_PICSI Putative uncharacterized protein OS=Picea... 178 3e-43 tr|B4FPJ2|B4FPJ2_MAIZE Putative uncharacterized protein OS=Zea m... 177 4e-43 tr|Q9LMN4|Q9LMN4_ARATH F16F4.12 protein (Putative uncharacterize... 171 4e-41 tr|Q0WU01|Q0WU01_ARATH Putative uncharacterized protein At1g2119... 171 4e-41 tr|Q9C6K5|Q9C6K5_ARATH Sm-like protein (At1g76860) OS=Arabidopsi... 167 4e-40 tr|A8J8R7|A8J8R7_CHLRE Sm protein OS=Chlamydomonas reinhardtii G... 159 2e-37 tr|B3RUU9|B3RUU9_TRIAD Putative uncharacterized protein OS=Trich... 155 2e-36 tr|A4SAP1|A4SAP1_OSTLU Predicted protein OS=Ostreococcus lucimar... 155 2e-36 tr|B6P493|B6P493_BRAFL Putative uncharacterized protein (Fragmen... 154 5e-36 tr|A7RNM2|A7RNM2_NEMVE Predicted protein OS=Nematostella vectens... 153 9e-36 tr|Q1HPZ4|Q1HPZ4_BOMMO LSM Sm-like protein family member OS=Bomb... 152 2e-35 tr|Q00WG9|Q00WG9_OSTTA Urophorphyrin III methylase (ISS) OS=Ostr... 152 2e-35 tr|Q4SYV4|Q4SYV4_TETNG Chromosome 11 SCAF11945, whole genome sho... 151 4e-35 tr|B5FXE3|B5FXE3_TAEGU Putative sm like protein U6 snRNA-associa... 151 4e-35 tr|A9JSD0|A9JSD0_XENTR Putative uncharacterized protein OS=Xenop... 151 4e-35 tr|A4QNH9|A4QNH9_XENTR LOC100125161 protein (Fragment) OS=Xenopu... 151 4e-35 tr|B7PD40|B7PD40_IXOSC Snrnp sm protein, putative OS=Ixodes scap... 151 4e-35 tr|Q6IAH0|Q6IAH0_HUMAN LSM3 protein OS=Homo sapiens GN=LSM3 PE=2... 151 4e-35 tr|B4QSE5|B4QSE5_DROSI GD21053 OS=Drosophila simulans GN=GD21053... 150 6e-35 tr|Q0PXZ2|Q0PXZ2_DIACI Putative U6 snRNA-associated Sm-like prot... 149 1e-34 tr|B0W2G0|B0W2G0_CULQU Snrnp sm protein OS=Culex quinquefasciatu... 149 1e-34 tr|A3KMU6|A3KMU6_XENLA LOC100049097 protein OS=Xenopus laevis GN... 148 2e-34 tr|B2R5H5|B2R5H5_HUMAN cDNA, FLJ92476, highly similar to Homo sa... 148 2e-34 tr|Q16V68|Q16V68_AEDAE Snrnp sm protein OS=Aedes aegypti GN=AAEL... 148 3e-34 tr|B5DVH7|B5DVH7_DROPS GA27243 OS=Drosophila pseudoobscura pseud... 148 3e-34 tr|B5DUQ1|B5DUQ1_DROPS GA29226 OS=Drosophila pseudoobscura pseud... 148 3e-34 tr|B4G443|B4G443_DROPE GL23390 OS=Drosophila persimilis GN=GL233... 148 3e-34 tr|Q8IMX8|Q8IMX8_DROME CG31184 OS=Drosophila melanogaster GN=CG3... 147 4e-34
>tr|Q5N9F1|Q5N9F1_ORYSJ cDNA clone:001-012-B01, full insert sequence OS=Oryza sativa subsp. japonica GN=P0505D12.39 PE=4 SV=1 Length = 104
Score = 179 bits (453), Expect = 2e-43 Identities = 89/98 (90%), Positives = 95/98 (96%) Frame = +1
Query: 79 AATAEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITSV 258 AA AEE+ AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE++T+V Sbjct: 7 AAAAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV 66
Query: 259 EIDDETYEEIVRTSKRQIPFLFVRGDGVILVSPPLRTS 372 EIDDETYEEIVRT+KR IPFLFVRGDGVILVSPPLRT+ Sbjct: 67 EIDDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA 104
>tr|A2WXB5|A2WXB5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_04561 PE=4 SV=1 Length = 104
Score = 179 bits (453), Expect = 2e-43 Identities = 89/98 (90%), Positives = 95/98 (96%) Frame = +1
Query: 79 AATAEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITSV 258 AA AEE+ AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE++T+V Sbjct: 7 AAAAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV 66
Query: 259 EIDDETYEEIVRTSKRQIPFLFVRGDGVILVSPPLRTS 372 EIDDETYEEIVRT+KR IPFLFVRGDGVILVSPPLRT+ Sbjct: 67 EIDDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA 104
>tr|B8LNL7|B8LNL7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 97
Score = 178 bits (451), Expect = 3e-43 Identities = 89/94 (94%), Positives = 93/94 (98%) Frame = +1
Query: 91 EEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITSVEIDD 270 EEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVIT+VEIDD Sbjct: 4 EEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITTVEIDD 63
Query: 271 ETYEEIVRTSKRQIPFLFVRGDGVILVSPPLRTS 372 ETYEEIV+TSKR +P+LFVRGDGVILVSPPLRTS Sbjct: 64 ETYEEIVKTSKRVVPYLFVRGDGVILVSPPLRTS 97
>tr|B4FPJ2|B4FPJ2_MAIZE Putative uncharacterized protein OS=Zea mays PE=4 SV=1 Length = 98
Score = 177 bits (450), Expect = 4e-43 Identities = 89/97 (91%), Positives = 94/97 (96%) Frame = +1
Query: 82 ATAEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITSVE 261 A AEE+ AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV+T+VE Sbjct: 2 AAAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 61
Query: 262 IDDETYEEIVRTSKRQIPFLFVRGDGVILVSPPLRTS 372 IDDETYEEIVRT+KR IPFLFVRGDGVILVSPPLRT+ Sbjct: 62 IDDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA 98
>tr|Q9LMN4|Q9LMN4_ARATH F16F4.12 protein (Putative uncharacterized protein At1g21190) OS=Arabidopsis thaliana GN=At1g21190 PE=2 SV=1 Length = 97
Score = 171 bits (432), Expect = 4e-41 Identities = 82/96 (85%), Positives = 93/96 (96%) Frame = +1
Query: 85 TAEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITSVEI 264 + EED+ V+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEEVIT++EI Sbjct: 2 SVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEI 61
Query: 265 DDETYEEIVRTSKRQIPFLFVRGDGVILVSPPLRTS 372 DDETYEEIVRT+KR +PFLFVRGDGVILVSPPLRT+ Sbjct: 62 DDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTT 97
>tr|Q0WU01|Q0WU01_ARATH Putative uncharacterized protein At1g21190 (Fragment) OS=Arabidopsis thaliana GN=At1g21190 PE=2 SV=1 Length = 96
Score = 171 bits (432), Expect = 4e-41 Identities = 82/96 (85%), Positives = 93/96 (96%) Frame = +1
Query: 85 TAEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITSVEI 264 + EED+ V+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEEVIT++EI Sbjct: 1 SVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEI 60
Query: 265 DDETYEEIVRTSKRQIPFLFVRGDGVILVSPPLRTS 372 DDETYEEIVRT+KR +PFLFVRGDGVILVSPPLRT+ Sbjct: 61 DDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTT 96
>tr|Q9C6K5|Q9C6K5_ARATH Sm-like protein (At1g76860) OS=Arabidopsis thaliana GN=At1g76860 PE=4 SV=1 Length = 98
Score = 167 bits (424), Expect = 4e-40 Identities = 83/96 (86%), Positives = 91/96 (94%) Frame = +1
Query: 85 TAEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITSVEI 264 + EE++ V+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE IT+VEI Sbjct: 2 SGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEI 61
Query: 265 DDETYEEIVRTSKRQIPFLFVRGDGVILVSPPLRTS 372 DDETYEEIVRT+KR I FLFVRGDGVILVSPPLRT+ Sbjct: 62 DDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRTA 97
>tr|A8J8R7|A8J8R7_CHLRE Sm protein OS=Chlamydomonas reinhardtii GN=SMP8 PE=4 SV=1 Length = 97
Score = 159 bits (401), Expect = 2e-37 Identities = 76/92 (82%), Positives = 86/92 (93%) Frame = +1
Query: 94 EDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITSVEIDDE 273 E + VKEPLDLIRLSLDERIYVKLR +RELRG+LHAYDQHLNMILG+VEE +T+VEIDDE Sbjct: 6 ETATVKEPLDLIRLSLDERIYVKLRGERELRGRLHAYDQHLNMILGEVEETLTTVEIDDE 65
Query: 274 TYEEIVRTSKRQIPFLFVRGDGVILVSPPLRT 369 TYEEI++T KR IPFLFVRGDG+ILVSPPLR+ Sbjct: 66 TYEEIIKTQKRVIPFLFVRGDGIILVSPPLRS 97
>tr|B3RUU9|B3RUU9_TRIAD Putative uncharacterized protein OS=Trichoplax adhaerens GN=TRIADDRAFT_23866 PE=4 SV=1 Length = 104
Score = 155 bits (392), Expect = 2e-36 Identities = 74/97 (76%), Positives = 87/97 (89%) Frame = +1
Query: 76 MAATAEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITS 255 +A E + V+EPLDL+RLSLDERI VK+R+DRELRG+LHAYDQHLNM+LGDVEE IT+ Sbjct: 4 VATNEETSNTVEEPLDLVRLSLDERILVKMRNDRELRGRLHAYDQHLNMVLGDVEETITT 63
Query: 256 VEIDDETYEEIVRTSKRQIPFLFVRGDGVILVSPPLR 366 VEIDDET+EE+ +TSKRQIP L+VRGDGVILVSPPLR Sbjct: 64 VEIDDETFEELYKTSKRQIPMLYVRGDGVILVSPPLR 100
>tr|A4SAP1|A4SAP1_OSTLU Predicted protein OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_43771 PE=4 SV=1 Length = 97
Score = 155 bits (391), Expect = 2e-36 Identities = 72/96 (75%), Positives = 86/96 (89%) Frame = +1
Query: 82 ATAEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITSVE 261 + AEED+AV+EPLDLIRL+LDE++YVKLR DRE RG+LHAYDQHLNMILGDVEEVITS E Sbjct: 2 SAAEEDAAVREPLDLIRLALDEKVYVKLRGDREARGRLHAYDQHLNMILGDVEEVITSTE 61
Query: 262 IDDETYEEIVRTSKRQIPFLFVRGDGVILVSPPLRT 369 D+ET+EE +T+KR +PFLF+RGD V LVSPPLR+ Sbjct: 62 TDEETFEEFTKTTKRSVPFLFIRGDAVTLVSPPLRS 97
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