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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956078
Clone id TST39A01NGRL0024_M20
Library
Length 512
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_M20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
AACAGAGCGTCATGGCAACGGTGGGAGTGGGTCGGGGACTGGTGTGGACGGTGCCCAAGC
TTAGCCTAAATACAACGCCCCGGCAACTGTCATGCGAGAGGAGGCCGCTGTTTCCTTGTA
CGAGCAGTCGTACTCTTCCTCTCGCGGCAACTGTCATGCTAGAGTAGGCCGCTATTTTCC
ATGCGCATTGCAACCCACTGTCAGCTCGCCCTGGGTGAGGCAGCCTCACTGATCACTGAC
TAGCCGCTACTACTCATCTGATCGCTGAACCCGTCTTGATGTGAGGCGCTAGCTCTCAGG
AGAGCACAACTAGCATCCGCTCCCCTAGCCTTCTGCCAAGTGGATCCTTTGTCGAACCAA
GCTAACAAGCTCACTGCACCCCCGCTGCCCATGGCGGTGCTCACATACAAACTGCATGTC
GTTAAACAGTTTCTCCCTTTTTTGCTCATACACGTACAGCTTTAAACTAAGGTGGCCTCT
TCCTCTCTCGAACATCCTTCCTTGCTCAAGAA
■■Homology search results ■■ -
sp_hit_id Q77Z83
Definition sp|Q77Z83|IE2_HHV6U Immediate-early protein 2 OS=Human herpesvirus 6A (strain Uganda-1102)
Align length 97
Score (bit) 31.2
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956078|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_M20, 5'
         (512 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q77Z83|IE2_HHV6U Immediate-early protein 2 OS=Human herpesvir...    31   2.9  
sp|Q93WY4|WRK12_ARATH Probable WRKY transcription factor 12 OS=A...    30   8.5  
sp|Q5T6F2|UBAP2_HUMAN Ubiquitin-associated protein 2 OS=Homo sap...    30   8.5  

>sp|Q77Z83|IE2_HHV6U Immediate-early protein 2 OS=Human herpesvirus
           6A (strain Uganda-1102) GN=U90/U87/U86 PE=2 SV=2
          Length = 1500

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 27/97 (27%), Positives = 41/97 (42%)
 Frame = -1

Query: 494 CSREEEATLV*SCTCMSKKGRNCLTTCSLYVSTAMGSGGAVSLLAWFDKGSTWQKARGAD 315
           C +  +  L  SCT  SK+  +  ++ +    ++  S  A S  +  D      +A   D
Sbjct: 704 CGKNSDKHLSKSCTMASKRAPSRASSRASSRDSSRASSRASSRASSRDSSRASSRASSRD 763

Query: 314 ASCALLRASASHQDGFSDQMSSSG*SVISEAASPRAS 204
           +S A  RAS+      S + SS   S  S   S RAS
Sbjct: 764 SSRASSRASSRASSKASSRASSRASSRASSRDSSRAS 800


>sp|Q93WY4|WRK12_ARATH Probable WRKY transcription factor 12
           OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1
          Length = 218

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 368 SSLHPRCPWRCSHTNC 415
           +SLHPR  +RC+H NC
Sbjct: 160 NSLHPRSYYRCTHNNC 175


>sp|Q5T6F2|UBAP2_HUMAN Ubiquitin-associated protein 2 OS=Homo
           sapiens GN=UBAP2 PE=1 SV=1
          Length = 1119

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 27/100 (27%), Positives = 43/100 (43%)
 Frame = +3

Query: 63  SLNTTPRQLSCERRPLFPCTSSRTLPLAATVMLE*AAIFHAHCNPLSARPG*GSLTDH*L 242
           S+++ P   SC    L P TS  T  L ++ + + ++   +H + LSA     S T H  
Sbjct: 669 SVSSLPSTTSCTA--LLPSTSQHTGDLTSSPLSQLSSSLSSHQSSLSAHAALSSSTSH-- 724

Query: 243 AATTHLIAEPVLM*GASSQESTTSIRSPSLLPSGSFVEPS 362
              TH   E      +S+  ST +    S   SG+ +  S
Sbjct: 725 ---THASVESASSHQSSATFSTAATSVSSSASSGASLSSS 761
tr_hit_id Q4RRE7
Definition tr|Q4RRE7|Q4RRE7_TETNG Chromosome 16 SCAF15002, whole genome shotgun sequence OS=Tetraodon nigroviridis
Align length 62
Score (bit) 35.8
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956078|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_M20, 5'
         (512 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4RRE7|Q4RRE7_TETNG Chromosome 16 SCAF15002, whole genome sho...    36   1.3  
tr|Q84G23|Q84G23_STRHY GdmAII OS=Streptomyces hygroscopicus GN=g...    36   1.3  
tr|Q1L0T1|Q1L0T1_STRHY GelB OS=Streptomyces hygroscopicus subsp....    36   1.3  
tr|Q49BE0|Q49BE0_STRHY HbmAII OS=Streptomyces hygroscopicus GN=h...    35   1.6  

>tr|Q4RRE7|Q4RRE7_TETNG Chromosome 16 SCAF15002, whole genome
           shotgun sequence OS=Tetraodon nigroviridis
           GN=GSTENG00030200001 PE=4 SV=1
          Length = 972

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
 Frame = +2

Query: 98  EEAAVSLYEQSYSSSRGN---------CHARVGRYFPCALQP--TVSSPWVRQPH*SLTS 244
           +EAAVS     +  S+G          CH  V RYF   LQP  TV SPW R+    L  
Sbjct: 594 KEAAVSAVTTPFKLSKGKRMNKERTEKCHKAVTRYFVKTLQPLSTVESPWFRELTRILNP 653

Query: 245 RY 250
           +Y
Sbjct: 654 KY 655


>tr|Q84G23|Q84G23_STRHY GdmAII OS=Streptomyces hygroscopicus GN=gdmAII
            PE=4 SV=1
          Length = 3435

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = -1

Query: 449  MSKKGRNCLTTCSLYVSTAMGSGGAVSLLAWFDKGSTWQKARGADASCALLRASASHQDG 270
            +S+ GR  L      V +A G  G VSLL+W D+  T         +  L  A A    G
Sbjct: 2814 VSETGREALGD---QVKSADGGAGVVSLLSWDDRADTEYGTVSTGTAATLAVAQALRDHG 2870

Query: 269  FSDQM---SSSG*SVISEAASPRAS*QW 195
             +  +   +S G +V  EAA P  S  W
Sbjct: 2871 VTAPLWCVTSGGVAVAGEAADPVQSAVW 2898


>tr|Q1L0T1|Q1L0T1_STRHY GelB OS=Streptomyces hygroscopicus subsp.
            duamyceticus PE=4 SV=1
          Length = 3432

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = -1

Query: 449  MSKKGRNCLTTCSLYVSTAMGSGGAVSLLAWFDKGSTWQKARGADASCALLRASASHQDG 270
            +S+ GR  L      V +A G  G VSLL+W D+  T         +  L  A A    G
Sbjct: 2814 VSETGREALGD---QVKSADGGAGVVSLLSWDDRADTEYGTVSTGTAATLAVAQALRDHG 2870

Query: 269  FSDQM---SSSG*SVISEAASPRAS*QW 195
             +  +   +S G +V  EAA P  S  W
Sbjct: 2871 VTAPLWCVTSGGVAVAGEAADPVQSAVW 2898


>tr|Q49BE0|Q49BE0_STRHY HbmAII OS=Streptomyces hygroscopicus GN=hbmAII
            PE=4 SV=1
          Length = 3431

 Score = 35.4 bits (80), Expect = 1.6
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
 Frame = -1

Query: 449  MSKKGRNCLTTCSLYVSTAMGSGGAVSLLAWFDKGSTWQKARGADASCALLRASASHQDG 270
            +S+ GR  L      V +A G  G VSLL+W D+  T         +  L  A A    G
Sbjct: 2812 VSETGREALGD---QVKSADGGAGVVSLLSWDDRADTEYGTVSTGTAATLAAAQALRDHG 2868

Query: 269  FSDQM---SSSG*SVISEAASPRAS*QW 195
             +  +   +S G +V  E A P  S  W
Sbjct: 2869 ITAPLWCVTSGGVAVAGETADPVQSAVW 2896