DK956083 |
Clone id |
TST39A01NGRL0024_N01 |
Library |
TST39 |
Length |
444 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_N01. 5' end sequence. |
Accession |
DK956083 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL500Contig1 |
Sequence |
AATTCCCACCCATGAAGTACGGCGCAGGCTCCCGCGCCTGTCGTGTTTGCGGAAATGTTC ATGGGCTTGTACGGAAGTACAATCTGATGTGCTGTAGACAGTGCTTCCGCATCTATCCTA GGGACATTGGCTTTGTGAAGTATCGCTAGGTTAGTTTAATGGACGTACGCTCGGCTGCAA CCACCTTGGAATCTTTGGCAAAGGTGGTTTTCAACATGTGGAAGGAGTGTATGGACATGT AGTTTCAATTATGATTAATAGAGTTTTATTGTTCACTATGAAACGATCTCATGGGACCAA AACTTTTTTCCATGGATTCTCCTCTTTTCTTTCTGGGATGCTTCCGGCCCAGTGCTGTGT GTAGGGGTGGACGCCTGGTTGGTTTGTTTTGAGTATTTGCAATGTGAAACTAAGCTACGG ATCAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5I7K3 |
Definition |
sp|Q5I7K3|RS29_WHEAT 40S ribosomal protein S29 OS=Triticum aestivum |
Align length |
46 |
Score (bit) |
84.7 |
E-value |
1.0e-16 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NJU6 |
Definition |
tr|A9NJU6|A9NJU6_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
46 |
Score (bit) |
88.2 |
E-value |
2.0e-16 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956083|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_N01, 5' (423 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NJU6|A9NJU6_PICSI Putative uncharacterized protein OS=Picea... 88 2e-16 tr|A9P0U9|A9P0U9_PICSI Putative uncharacterized protein OS=Picea... 84 5e-15 tr|Q7XZX4|Q7XZX4_ORYSJ 40S ribosomal protein S29, putative, expr... 83 6e-15 tr|A2ZG71|A2ZG71_ORYSI Putative uncharacterized protein OS=Oryza... 83 6e-15 tr|Q677D1|Q677D1_HYAOR Ribosomal protein S29 (Fragment) OS=Hyaci... 82 2e-14 tr|B6SMC7|B6SMC7_MAIZE 40S ribosomal protein S29 OS=Zea mays PE=... 81 3e-14 tr|A9PAM2|A9PAM2_POPTR Putative uncharacterized protein OS=Popul... 81 3e-14 tr|A9P9S8|A9P9S8_POPTR Putative uncharacterized protein OS=Popul... 81 3e-14 tr|B6U9V0|B6U9V0_MAIZE 40S ribosomal protein S29 OS=Zea mays PE=... 80 4e-14 tr|B6T147|B6T147_MAIZE 40S ribosomal protein S29 OS=Zea mays PE=... 79 9e-14 tr|Q2QQ34|Q2QQ34_ORYSJ 40S ribosomal protein S29, putative, expr... 79 1e-13 tr|Q10E81|Q10E81_ORYSJ Ribosomal protein S14p/S29e containing pr... 79 1e-13 tr|B8BM34|B8BM34_ORYSI Putative uncharacterized protein OS=Oryza... 79 1e-13 tr|B8BM32|B8BM32_ORYSI Putative uncharacterized protein OS=Oryza... 79 1e-13 tr|B8AKJ9|B8AKJ9_ORYSI Putative uncharacterized protein OS=Oryza... 79 1e-13 tr|A3AN48|A3AN48_ORYSJ Putative uncharacterized protein OS=Oryza... 79 1e-13 tr|A7PDU6|A7PDU6_VITVI Chromosome chr11 scaffold_13, whole genom... 78 2e-13 tr|B6UE01|B6UE01_MAIZE 40S ribosomal protein S29 OS=Zea mays PE=... 77 4e-13 tr|Q67XK4|Q67XK4_ARATH Ribosomal S29 subunit OS=Arabidopsis thal... 76 7e-13 tr|A9RGD7|A9RGD7_PHYPA Predicted protein OS=Physcomitrella paten... 76 7e-13 tr|A9V6U9|A9V6U9_MONBE Predicted protein OS=Monosiga brevicollis... 76 7e-13 tr|Q6Q419|Q6Q419_DANRE Ribosomal protein S29 OS=Danio rerio GN=r... 75 2e-12 tr|Q4SC00|Q4SC00_TETNG Chromosome 14 SCAF14660, whole genome sho... 74 5e-12 tr|Q4QR32|Q4QR32_XENLA MGC114875 protein OS=Xenopus laevis GN=MG... 74 5e-12 tr|A2Q0U6|A2Q0U6_SOLSE Ribosomal protein S29 OS=Solea senegalens... 74 5e-12 tr|A0EZZ7|A0EZZ7_SCOMX 40S ribosomal protein S29 OS=Scophthalmus... 74 5e-12 tr|Q28D24|Q28D24_XENTR Ribosomal protein S29 OS=Xenopus tropical... 73 6e-12 tr|B5FZD5|B5FZD5_TAEGU Putative 40S ribosomal protein S29 OS=Tae... 73 6e-12 tr|Q209Q3|Q209Q3_9CHLO Ribosomal protein S29 subunit OS=Chlamydo... 73 6e-12 tr|Q4KTB2|Q4KTB2_SUBDO S29 OS=Suberites domuncula PE=4 SV=1 73 6e-12
>tr|A9NJU6|A9NJU6_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 56
Score = 88.2 bits (217), Expect = 2e-16 Identities = 37/46 (80%), Positives = 39/46 (84%) Frame = +3
Query: 9 PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146 P KYG GSRACRVCGN HGL+RKY L CCRQCFR Y +DIGFVKYR Sbjct: 11 PKKYGPGSRACRVCGNPHGLIRKYGLNCCRQCFRTYSKDIGFVKYR 56
>tr|A9P0U9|A9P0U9_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 56
Score = 83.6 bits (205), Expect = 5e-15 Identities = 34/46 (73%), Positives = 37/46 (80%) Frame = +3
Query: 9 PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146 P YG GSR CRVCGN HGL+RKY + CCRQCFR Y +DIGFVKYR Sbjct: 11 PKSYGPGSRTCRVCGNSHGLIRKYGINCCRQCFRSYAKDIGFVKYR 56
>tr|Q7XZX4|Q7XZX4_ORYSJ 40S ribosomal protein S29, putative, expressed OS=Oryza sativa subsp. japonica GN=OSJNBb0094O03.12 PE=4 SV=1 Length = 56
Score = 83.2 bits (204), Expect = 6e-15 Identities = 34/46 (73%), Positives = 37/46 (80%) Frame = +3
Query: 9 PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146 P YG GSR CRVCGN HGL+RKY LMCCRQCFR +DIGF+KYR Sbjct: 11 PKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKYR 56
>tr|A2ZG71|A2ZG71_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_36775 PE=4 SV=1 Length = 56
Score = 83.2 bits (204), Expect = 6e-15 Identities = 34/46 (73%), Positives = 37/46 (80%) Frame = +3
Query: 9 PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146 P YG GSR CRVCGN HGL+RKY LMCCRQCFR +DIGF+KYR Sbjct: 11 PKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKYR 56
>tr|Q677D1|Q677D1_HYAOR Ribosomal protein S29 (Fragment) OS=Hyacinthus orientalis GN=RPS29 PE=2 SV=1 Length = 73
Score = 81.6 bits (200), Expect = 2e-14 Identities = 33/46 (71%), Positives = 37/46 (80%) Frame = +3
Query: 9 PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146 P YG GSR CRVCGN HGL+RKY LMCCRQCFR ++IGF+KYR Sbjct: 28 PSSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 73
>tr|B6SMC7|B6SMC7_MAIZE 40S ribosomal protein S29 OS=Zea mays PE=4 SV=1 Length = 56
Score = 80.9 bits (198), Expect = 3e-14 Identities = 33/46 (71%), Positives = 36/46 (78%) Frame = +3
Query: 9 PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146 P YG GSR CRVC N HGL+RKY LMCCRQCFR +DIGF+KYR Sbjct: 11 PKNYGPGSRVCRVCANPHGLIRKYGLMCCRQCFRSNAKDIGFIKYR 56
>tr|A9PAM2|A9PAM2_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 56
Score = 80.9 bits (198), Expect = 3e-14 Identities = 32/46 (69%), Positives = 37/46 (80%) Frame = +3
Query: 9 PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146 P YG GSR CRVCGN HG++RKY LMCCRQCFR ++IGF+KYR Sbjct: 11 PRNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR 56
>tr|A9P9S8|A9P9S8_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 56
Score = 80.9 bits (198), Expect = 3e-14 Identities = 32/46 (69%), Positives = 37/46 (80%) Frame = +3
Query: 9 PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146 P YG GSR CRVCGN HG++RKY LMCCRQCFR ++IGF+KYR Sbjct: 11 PKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR 56
>tr|B6U9V0|B6U9V0_MAIZE 40S ribosomal protein S29 OS=Zea mays PE=4 SV=1 Length = 56
Score = 80.5 bits (197), Expect = 4e-14 Identities = 33/46 (71%), Positives = 37/46 (80%) Frame = +3
Query: 9 PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146 P KYG GSR CRVCGN HGL+RKY L CCRQCFR ++IGF+KYR Sbjct: 11 PKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56
>tr|B6T147|B6T147_MAIZE 40S ribosomal protein S29 OS=Zea mays PE=4 SV=1 Length = 99
Score = 79.3 bits (194), Expect = 9e-14 Identities = 32/46 (69%), Positives = 36/46 (78%) Frame = +3
Query: 9 PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146 P YG GSR C+VC N HGL+RKY LMCCRQCFR +DIGF+KYR Sbjct: 11 PKNYGPGSRVCQVCANPHGLIRKYGLMCCRQCFRSNAKDIGFIKYR 56
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