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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956083
Clone id TST39A01NGRL0024_N01
Library
Length 444
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_N01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AATTCCCACCCATGAAGTACGGCGCAGGCTCCCGCGCCTGTCGTGTTTGCGGAAATGTTC
ATGGGCTTGTACGGAAGTACAATCTGATGTGCTGTAGACAGTGCTTCCGCATCTATCCTA
GGGACATTGGCTTTGTGAAGTATCGCTAGGTTAGTTTAATGGACGTACGCTCGGCTGCAA
CCACCTTGGAATCTTTGGCAAAGGTGGTTTTCAACATGTGGAAGGAGTGTATGGACATGT
AGTTTCAATTATGATTAATAGAGTTTTATTGTTCACTATGAAACGATCTCATGGGACCAA
AACTTTTTTCCATGGATTCTCCTCTTTTCTTTCTGGGATGCTTCCGGCCCAGTGCTGTGT
GTAGGGGTGGACGCCTGGTTGGTTTGTTTTGAGTATTTGCAATGTGAAACTAAGCTACGG
ATCAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q5I7K3
Definition sp|Q5I7K3|RS29_WHEAT 40S ribosomal protein S29 OS=Triticum aestivum
Align length 46
Score (bit) 84.7
E-value 1.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956083|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_N01, 5'
         (423 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5I7K3|RS29_WHEAT 40S ribosomal protein S29 OS=Triticum aesti...    85   1e-16
sp|Q680P8|RS29_ARATH 40S ribosomal protein S29 OS=Arabidopsis th...    80   2e-15
sp|Q7XYB0|RS29_GRIJA 40S ribosomal protein S29 OS=Griffithsia ja...    80   3e-15
sp|Q90YP2|RS29_ICTPU 40S ribosomal protein S29 OS=Ictalurus punc...    74   3e-13
sp|Q6UZG0|RS29_HIPCM 40S ribosomal protein S29 OS=Hippocampus co...    74   3e-13
sp|P62275|RS29_RAT 40S ribosomal protein S29 OS=Rattus norvegicu...    73   4e-13
sp|Q5R9J0|RS29_PONAB 40S ribosomal protein S29 OS=Pongo abelii G...    73   4e-13
sp|Q6QAP6|RS29_PIG 40S ribosomal protein S29 OS=Sus scrofa GN=RP...    73   4e-13
sp|P62274|RS29_MOUSE 40S ribosomal protein S29 OS=Mus musculus G...    73   4e-13
sp|P62273|RS29_HUMAN 40S ribosomal protein S29 OS=Homo sapiens G...    73   4e-13
sp|P62276|RS29_BOVIN 40S ribosomal protein S29 OS=Bos taurus GN=...    73   4e-13
sp|Q4LAY1|RS29_SCALT 40S ribosomal protein S29 OS=Scarabaeus lat...    70   3e-12
sp|Q6F473|RS29_PLUXY 40S ribosomal protein S29 OS=Plutella xylos...    70   3e-12
sp|Q9VH69|RS29_DROME 40S ribosomal protein S29 OS=Drosophila mel...    70   3e-12
sp|Q8WQI3|RS29_SPOFR 40S ribosomal protein S29 OS=Spodoptera fru...    69   6e-12
sp|Q56FL2|RS29_LYSTE 40S ribosomal protein S29 OS=Lysiphlebus te...    69   7e-12
sp|Q4PM47|RS29_IXOSC 40S ribosomal protein S29 OS=Ixodes scapula...    69   7e-12
sp|Q9NB51|RS29_CULQU 40S ribosomal protein S29 OS=Culex quinquef...    69   7e-12
sp|Q5UAL3|RS29_BOMMO 40S ribosomal protein S29 OS=Bombyx mori GN...    69   1e-11
sp|Q5MGJ4|RS29_LONON 40S ribosomal protein S29 OS=Lonomia obliqu...    66   6e-11
sp|Q98SC7|RS29_GUITH 40S ribosomal protein S29A OS=Guillardia th...    65   1e-10
sp|Q757G1|RS29_ASHGO 40S ribosomal protein S29 OS=Ashbya gossypi...    65   1e-10
sp|Q76P36|RS29_DICDI 40S ribosomal protein S29 OS=Dictyostelium ...    64   2e-10
sp|P41058|RS29B_YEAST 40S ribosomal protein S29-B OS=Saccharomyc...    64   2e-10
sp|Q9C2P2|RS29_NEUCR 40S ribosomal protein S29 OS=Neurospora cra...    64   3e-10
sp|Q6FWE3|RS29_CANGA 40S ribosomal protein S29 OS=Candida glabra...    64   3e-10
sp|P41057|RS29A_YEAST 40S ribosomal protein S29-A OS=Saccharomyc...    64   3e-10
sp|Q5EMX3|RS29_MAGGR 40S ribosomal protein S29 OS=Magnaporthe gr...    63   5e-10
sp|Q6BY86|RS29_DEBHA 40S ribosomal protein S29 OS=Debaryomyces h...    62   1e-09
sp|Q8TW16|RS14_METKA 30S ribosomal protein S14P OS=Methanopyrus ...    59   1e-08

>sp|Q5I7K3|RS29_WHEAT 40S ribosomal protein S29 OS=Triticum aestivum
           GN=RPS29 PE=3 SV=1
          Length = 56

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 35/46 (76%), Positives = 38/46 (82%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146
           P  YGAGSR CRVCGN HGL+RKY LMCCRQCFR   +DIGF+KYR
Sbjct: 11  PKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIKYR 56


>sp|Q680P8|RS29_ARATH 40S ribosomal protein S29 OS=Arabidopsis
           thaliana GN=RPS29A PE=3 SV=2
          Length = 56

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 33/46 (71%), Positives = 37/46 (80%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146
           P KYG GSR CRVCGN HGL+RKY L CCRQCFR   ++IGF+KYR
Sbjct: 11  PKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56


>sp|Q7XYB0|RS29_GRIJA 40S ribosomal protein S29 OS=Griffithsia
           japonica GN=RPS29 PE=3 SV=1
          Length = 56

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 31/46 (67%), Positives = 39/46 (84%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146
           P KYG GSR+C++CGN HGL+RKY++  CRQCFR Y +DIGF+KYR
Sbjct: 11  PRKYGKGSRSCKICGNKHGLIRKYSMNICRQCFREYAKDIGFIKYR 56


>sp|Q90YP2|RS29_ICTPU 40S ribosomal protein S29 OS=Ictalurus
           punctatus GN=rps29 PE=3 SV=3
          Length = 56

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVK 140
           P K+G GSR+CRVC N HGL+RKY L  CRQCFR Y +DIGFVK
Sbjct: 11  PRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVK 54


>sp|Q6UZG0|RS29_HIPCM 40S ribosomal protein S29 OS=Hippocampus comes
           GN=rps29 PE=3 SV=3
          Length = 56

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVK 140
           P K+G GSR+CRVC N HGL+RKY L  CRQCFR Y +DIGFVK
Sbjct: 11  PRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVK 54


>sp|P62275|RS29_RAT 40S ribosomal protein S29 OS=Rattus norvegicus
           GN=Rps29 PE=1 SV=2
          Length = 56

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 30/44 (68%), Positives = 35/44 (79%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVK 140
           P K+G GSR+CRVC N HGL+RKY L  CRQCFR Y +DIGF+K
Sbjct: 11  PRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54


>sp|Q5R9J0|RS29_PONAB 40S ribosomal protein S29 OS=Pongo abelii
           GN=RPS29 PE=3 SV=1
          Length = 56

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 30/44 (68%), Positives = 35/44 (79%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVK 140
           P K+G GSR+CRVC N HGL+RKY L  CRQCFR Y +DIGF+K
Sbjct: 11  PRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54


>sp|Q6QAP6|RS29_PIG 40S ribosomal protein S29 OS=Sus scrofa GN=RPS29
           PE=3 SV=3
          Length = 56

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 30/44 (68%), Positives = 35/44 (79%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVK 140
           P K+G GSR+CRVC N HGL+RKY L  CRQCFR Y +DIGF+K
Sbjct: 11  PRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54


>sp|P62274|RS29_MOUSE 40S ribosomal protein S29 OS=Mus musculus
           GN=Rps29 PE=2 SV=2
          Length = 56

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 30/44 (68%), Positives = 35/44 (79%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVK 140
           P K+G GSR+CRVC N HGL+RKY L  CRQCFR Y +DIGF+K
Sbjct: 11  PRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54


>sp|P62273|RS29_HUMAN 40S ribosomal protein S29 OS=Homo sapiens
           GN=RPS29 PE=1 SV=2
          Length = 56

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 30/44 (68%), Positives = 35/44 (79%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVK 140
           P K+G GSR+CRVC N HGL+RKY L  CRQCFR Y +DIGF+K
Sbjct: 11  PRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54
tr_hit_id A9NJU6
Definition tr|A9NJU6|A9NJU6_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 46
Score (bit) 88.2
E-value 2.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956083|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_N01, 5'
         (423 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NJU6|A9NJU6_PICSI Putative uncharacterized protein OS=Picea...    88   2e-16
tr|A9P0U9|A9P0U9_PICSI Putative uncharacterized protein OS=Picea...    84   5e-15
tr|Q7XZX4|Q7XZX4_ORYSJ 40S ribosomal protein S29, putative, expr...    83   6e-15
tr|A2ZG71|A2ZG71_ORYSI Putative uncharacterized protein OS=Oryza...    83   6e-15
tr|Q677D1|Q677D1_HYAOR Ribosomal protein S29 (Fragment) OS=Hyaci...    82   2e-14
tr|B6SMC7|B6SMC7_MAIZE 40S ribosomal protein S29 OS=Zea mays PE=...    81   3e-14
tr|A9PAM2|A9PAM2_POPTR Putative uncharacterized protein OS=Popul...    81   3e-14
tr|A9P9S8|A9P9S8_POPTR Putative uncharacterized protein OS=Popul...    81   3e-14
tr|B6U9V0|B6U9V0_MAIZE 40S ribosomal protein S29 OS=Zea mays PE=...    80   4e-14
tr|B6T147|B6T147_MAIZE 40S ribosomal protein S29 OS=Zea mays PE=...    79   9e-14
tr|Q2QQ34|Q2QQ34_ORYSJ 40S ribosomal protein S29, putative, expr...    79   1e-13
tr|Q10E81|Q10E81_ORYSJ Ribosomal protein S14p/S29e containing pr...    79   1e-13
tr|B8BM34|B8BM34_ORYSI Putative uncharacterized protein OS=Oryza...    79   1e-13
tr|B8BM32|B8BM32_ORYSI Putative uncharacterized protein OS=Oryza...    79   1e-13
tr|B8AKJ9|B8AKJ9_ORYSI Putative uncharacterized protein OS=Oryza...    79   1e-13
tr|A3AN48|A3AN48_ORYSJ Putative uncharacterized protein OS=Oryza...    79   1e-13
tr|A7PDU6|A7PDU6_VITVI Chromosome chr11 scaffold_13, whole genom...    78   2e-13
tr|B6UE01|B6UE01_MAIZE 40S ribosomal protein S29 OS=Zea mays PE=...    77   4e-13
tr|Q67XK4|Q67XK4_ARATH Ribosomal S29 subunit OS=Arabidopsis thal...    76   7e-13
tr|A9RGD7|A9RGD7_PHYPA Predicted protein OS=Physcomitrella paten...    76   7e-13
tr|A9V6U9|A9V6U9_MONBE Predicted protein OS=Monosiga brevicollis...    76   7e-13
tr|Q6Q419|Q6Q419_DANRE Ribosomal protein S29 OS=Danio rerio GN=r...    75   2e-12
tr|Q4SC00|Q4SC00_TETNG Chromosome 14 SCAF14660, whole genome sho...    74   5e-12
tr|Q4QR32|Q4QR32_XENLA MGC114875 protein OS=Xenopus laevis GN=MG...    74   5e-12
tr|A2Q0U6|A2Q0U6_SOLSE Ribosomal protein S29 OS=Solea senegalens...    74   5e-12
tr|A0EZZ7|A0EZZ7_SCOMX 40S ribosomal protein S29 OS=Scophthalmus...    74   5e-12
tr|Q28D24|Q28D24_XENTR Ribosomal protein S29 OS=Xenopus tropical...    73   6e-12
tr|B5FZD5|B5FZD5_TAEGU Putative 40S ribosomal protein S29 OS=Tae...    73   6e-12
tr|Q209Q3|Q209Q3_9CHLO Ribosomal protein S29 subunit OS=Chlamydo...    73   6e-12
tr|Q4KTB2|Q4KTB2_SUBDO S29 OS=Suberites domuncula PE=4 SV=1            73   6e-12

>tr|A9NJU6|A9NJU6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 56

 Score = 88.2 bits (217), Expect = 2e-16
 Identities = 37/46 (80%), Positives = 39/46 (84%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146
           P KYG GSRACRVCGN HGL+RKY L CCRQCFR Y +DIGFVKYR
Sbjct: 11  PKKYGPGSRACRVCGNPHGLIRKYGLNCCRQCFRTYSKDIGFVKYR 56


>tr|A9P0U9|A9P0U9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 56

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 34/46 (73%), Positives = 37/46 (80%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146
           P  YG GSR CRVCGN HGL+RKY + CCRQCFR Y +DIGFVKYR
Sbjct: 11  PKSYGPGSRTCRVCGNSHGLIRKYGINCCRQCFRSYAKDIGFVKYR 56


>tr|Q7XZX4|Q7XZX4_ORYSJ 40S ribosomal protein S29, putative,
           expressed OS=Oryza sativa subsp. japonica
           GN=OSJNBb0094O03.12 PE=4 SV=1
          Length = 56

 Score = 83.2 bits (204), Expect = 6e-15
 Identities = 34/46 (73%), Positives = 37/46 (80%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146
           P  YG GSR CRVCGN HGL+RKY LMCCRQCFR   +DIGF+KYR
Sbjct: 11  PKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKYR 56


>tr|A2ZG71|A2ZG71_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36775 PE=4 SV=1
          Length = 56

 Score = 83.2 bits (204), Expect = 6e-15
 Identities = 34/46 (73%), Positives = 37/46 (80%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146
           P  YG GSR CRVCGN HGL+RKY LMCCRQCFR   +DIGF+KYR
Sbjct: 11  PKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKYR 56


>tr|Q677D1|Q677D1_HYAOR Ribosomal protein S29 (Fragment)
           OS=Hyacinthus orientalis GN=RPS29 PE=2 SV=1
          Length = 73

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 33/46 (71%), Positives = 37/46 (80%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146
           P  YG GSR CRVCGN HGL+RKY LMCCRQCFR   ++IGF+KYR
Sbjct: 28  PSSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 73


>tr|B6SMC7|B6SMC7_MAIZE 40S ribosomal protein S29 OS=Zea mays PE=4
           SV=1
          Length = 56

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 33/46 (71%), Positives = 36/46 (78%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146
           P  YG GSR CRVC N HGL+RKY LMCCRQCFR   +DIGF+KYR
Sbjct: 11  PKNYGPGSRVCRVCANPHGLIRKYGLMCCRQCFRSNAKDIGFIKYR 56


>tr|A9PAM2|A9PAM2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 56

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 32/46 (69%), Positives = 37/46 (80%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146
           P  YG GSR CRVCGN HG++RKY LMCCRQCFR   ++IGF+KYR
Sbjct: 11  PRNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR 56


>tr|A9P9S8|A9P9S8_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 56

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 32/46 (69%), Positives = 37/46 (80%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146
           P  YG GSR CRVCGN HG++RKY LMCCRQCFR   ++IGF+KYR
Sbjct: 11  PKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR 56


>tr|B6U9V0|B6U9V0_MAIZE 40S ribosomal protein S29 OS=Zea mays PE=4
           SV=1
          Length = 56

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 33/46 (71%), Positives = 37/46 (80%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146
           P KYG GSR CRVCGN HGL+RKY L CCRQCFR   ++IGF+KYR
Sbjct: 11  PKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56


>tr|B6T147|B6T147_MAIZE 40S ribosomal protein S29 OS=Zea mays PE=4
           SV=1
          Length = 99

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 32/46 (69%), Positives = 36/46 (78%)
 Frame = +3

Query: 9   PMKYGAGSRACRVCGNVHGLVRKYNLMCCRQCFRIYPRDIGFVKYR 146
           P  YG GSR C+VC N HGL+RKY LMCCRQCFR   +DIGF+KYR
Sbjct: 11  PKNYGPGSRVCQVCANPHGLIRKYGLMCCRQCFRSNAKDIGFIKYR 56