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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956090
Clone id TST39A01NGRL0024_N08
Library
Length 623
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_N08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CGCAAGTGCGCGGGTACATACACAGAGAGAGAGACATCAGGGGCTCAGACCTGTGCCCTT
CAAGCCAAGCTGTACGGAAACATCAGAGGGTTACACTCTTTTTTGGGCTATTAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGATCAGAGAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAG
AGAGAGAGAGAGAGAGAGAGAGAGCGAGACCCTAGAGGCATATTTTGCTGCAGCTGTTTG
TTTCAAACCACGTTACAACTTCTAAGTGCAGACAAGCCCCCTTTGTTCCTTGGAAGCTTC
ATATAAATATGCTGGTGTCTGCTCATTCTCACAAGAAGAGGGAGCCCTTTTCCCGCCCAT
TCGGGTCCTACCCTACGTGAAATGGTTCTCTTGCTCTCTGATTAGAACTGGACTTATGGA
CAACTCCAGAGATTTTCAAGACAGCCTCTTTGGGCCATCCGCATCAATGCTTAACCCTCA
CAGGGTCTCTGGCGATGCCTTCGCCTTACCCTCGGGGGGCCTGATGCGATACCATTCAGC
TCCTAGCTCTACATTTGCCGCTCTCCTTGAATCAGATTTCTACTCTGCACATGATAGTTC
AGAGCTCGTCCAGTTTCTTACTG
■■Homology search results ■■ -
sp_hit_id Q9KUW9
Definition sp|Q9KUW9|METH_VIBCH Methionine synthase OS=Vibrio cholerae
Align length 26
Score (bit) 33.5
E-value 0.91
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956090|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_N08, 5'
         (623 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9KUW9|METH_VIBCH Methionine synthase OS=Vibrio cholerae GN=m...    33   0.91 
sp|Q1J0P2|RL10_DEIGD 50S ribosomal protein L10 OS=Deinococcus ge...    32   3.4  
sp|Q9R0A9|SNAT_MESAU Serotonin N-acetyltransferase OS=Mesocricet...    31   4.5  
sp|P13009|METH_ECOLI Methionine synthase OS=Escherichia coli (st...    31   5.9  
sp|Q9RSS9|RL10_DEIRA 50S ribosomal protein L10 OS=Deinococcus ra...    30   7.7  
sp|P37586|METH_SALTY Methionine synthase OS=Salmonella typhimuri...    30   7.7  

>sp|Q9KUW9|METH_VIBCH Methionine synthase OS=Vibrio cholerae GN=metH
            PE=3 SV=1
          Length = 1226

 Score = 33.5 bits (75), Expect = 0.91
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 26   RERHQGLRPVPFKPSCTETSEGYTLF 103
            RER+QG+RP P  P+C E +E  TL+
Sbjct: 1129 RERYQGIRPAPGYPACPEHTEKATLW 1154


>sp|Q1J0P2|RL10_DEIGD 50S ribosomal protein L10 OS=Deinococcus
           geothermalis (strain DSM 11300) GN=rplJ PE=3 SV=1
          Length = 169

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +2

Query: 395 SLIRTGLMDNSRDFQDSLFGPSASMLNPHRVSGDAFAL 508
           +LI   L ++ RDF D+L GPSA +L     +G A AL
Sbjct: 56  TLINLALQESGRDFSDALKGPSALVLAQEDPAGVAKAL 93


>sp|Q9R0A9|SNAT_MESAU Serotonin N-acetyltransferase OS=Mesocricetus
           auratus GN=AANAT PE=2 SV=1
          Length = 207

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = +2

Query: 467 MLNPHRVSGDAFALPSG-----GLMRYHSAPSSTFAALLESDFYSAHD 595
           ML+PH +  D   LP G     G  R H+ P+S F  L   D  S  +
Sbjct: 3   MLSPHSLKPDTLHLPPGTSEFLGCQRRHTLPASEFRCLTPQDAISVFE 50


>sp|P13009|METH_ECOLI Methionine synthase OS=Escherichia coli (strain
            K12) GN=metH PE=1 SV=5
          Length = 1227

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 26   RERHQGLRPVPFKPSCTETSEGYTLF 103
            RE +QG+RP P  P+C E +E  T++
Sbjct: 1127 RENYQGIRPAPGYPACPEHTEKATIW 1152


>sp|Q9RSS9|RL10_DEIRA 50S ribosomal protein L10 OS=Deinococcus
           radiodurans GN=rplJ PE=1 SV=1
          Length = 169

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 395 SLIRTGLMDNSRDFQDSLFGPSASMLNPHRVSGDAFAL 508
           +L+   L +  RDF D+L GPSA +L     +G A AL
Sbjct: 56  TLLNLALQEGGRDFDDALKGPSALVLAQEDPAGVAKAL 93


>sp|P37586|METH_SALTY Methionine synthase OS=Salmonella typhimurium
            GN=metH PE=3 SV=3
          Length = 1227

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 26   RERHQGLRPVPFKPSCTETSEGYTLF 103
            RE +QG+RP P  P+C E +E  T++
Sbjct: 1127 RENYQGIRPAPGYPACPEHTEKGTIW 1152
tr_hit_id Q9SQ79
Definition tr|Q9SQ79|Q9SQ79_PINTA Helix-loop-helix protein 1A OS=Pinus taeda
Align length 77
Score (bit) 35.8
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956090|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_N08, 5'
         (623 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SQ79|Q9SQ79_PINTA Helix-loop-helix protein 1A OS=Pinus taed...    36   2.1  
tr|Q4T4Q5|Q4T4Q5_TETNG Chromosome undetermined SCAF9565, whole g...    35   3.6  
tr|Q8PAH2|Q8PAH2_XANCP 5-methyltetrahydrofolate-homocysteine met...    35   4.7  
tr|Q4UT49|Q4UT49_XANC8 5-methyltetrahydrofolate-homocysteine met...    35   4.7  
tr|B0RVQ4|B0RVQ4_XANCB Methionine synthase (C-terminal) OS=Xanth...    35   4.7  
tr|B7RVB9|B7RVB9_9GAMM Methionine synthase OS=marine gamma prote...    34   6.2  

>tr|Q9SQ79|Q9SQ79_PINTA Helix-loop-helix protein 1A OS=Pinus taeda
           GN=HLH1 PE=4 SV=1
          Length = 551

 Score = 35.8 bits (81), Expect = 2.1
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 15/77 (19%)
 Frame = +2

Query: 422 NSRDFQDSLFGP--------SASMLNPHRVSGDAFALPSGGLMRYHSAPSSTFAALLE-- 571
           N+ DF D  + P           M    R S + F  P+G LMRYHSAPSS F++L E  
Sbjct: 55  NNVDFMDLDYKPPLCNVSQADGVMALTERGSSNNFQGPTG-LMRYHSAPSSFFSSLGEEE 113

Query: 572 -----SDFYSAHDSSEL 607
                S+++S + S+ L
Sbjct: 114 NNNIISEYFSGNSSNPL 130


>tr|Q4T4Q5|Q4T4Q5_TETNG Chromosome undetermined SCAF9565, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00007198001 PE=4 SV=1
          Length = 743

 Score = 35.0 bits (79), Expect = 3.6
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
 Frame = -2

Query: 550 RARS*MVSHQAPRG*GEGIARDPVRVKH*CGWPKEAVLKISG----------VVHKSSSN 401
           R R   V HQA RG G G +R P R++H   W     L++ G            H     
Sbjct: 542 RDRQGDVHHQAGRGPGGGWSRPPDRLRHHQSW-----LRVRGDQLACGGRRQPTHGQREG 596

Query: 400 QRAREPFHVG*DPNGREKGSL 338
            R R+P H G +  G + G L
Sbjct: 597 SRLRQPVHPGQEGPGGDPGPL 617


>tr|Q8PAH2|Q8PAH2_XANCP 5-methyltetrahydrofolate-homocysteine
           methyltransferase OS=Xanthomonas campestris pv.
           campestris GN=metH2 PE=4 SV=1
          Length = 918

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +2

Query: 29  ERHQGLRPVPFKPSCTETSEGYTLF 103
           ER+QG+RP P  P+C E SE  TLF
Sbjct: 819 ERYQGIRPAPGYPACPEHSEKRTLF 843


>tr|Q4UT49|Q4UT49_XANC8 5-methyltetrahydrofolate-homocysteine
           methyltransferase OS=Xanthomonas campestris pv.
           campestris (strain 8004) GN=XC_2725 PE=4 SV=1
          Length = 918

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +2

Query: 29  ERHQGLRPVPFKPSCTETSEGYTLF 103
           ER+QG+RP P  P+C E SE  TLF
Sbjct: 819 ERYQGIRPAPGYPACPEHSEKRTLF 843


>tr|B0RVQ4|B0RVQ4_XANCB Methionine synthase (C-terminal)
           OS=Xanthomonas campestris pv. campestris (strain B100)
           GN=metH2 PE=4 SV=1
          Length = 918

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +2

Query: 29  ERHQGLRPVPFKPSCTETSEGYTLF 103
           ER+QG+RP P  P+C E SE  TLF
Sbjct: 819 ERYQGIRPAPGYPACPEHSEKRTLF 843


>tr|B7RVB9|B7RVB9_9GAMM Methionine synthase OS=marine gamma
            proteobacterium HTCC2148 GN=metH PE=4 SV=1
          Length = 1234

 Score = 34.3 bits (77), Expect = 6.2
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 26   RERHQGLRPVPFKPSCTETSEGYTLF 103
            RER+QG+RP P  P+C + +E  TLF
Sbjct: 1137 RERYQGIRPAPGYPACPDHTEKATLF 1162