NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956092
Clone id TST39A01NGRL0024_N10
Library
Length 482
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_N10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAGAGAGAGAGAGAGAGAGAGAGAGAGGAGATAAGATGTCGTGCTGCAATGGTAACTGTG
GGTGCGGCGCAAACTGTCAATGCGCCAGCGGCTGCAAGGGGTGCGGCCGAACTGACAGCC
TTGTGCTGTCGAAGGAGGCGCCTCTCGTTCTCAGTGCCACTGCCTCCGTCTGCCCCAGCT
ATGAAAGGGCTCTAGGTTTCGGAGTGGAGAACATCTCTGGGTATCTTGGCTCTCCTACTT
CTTGTTTCCCTCTCAACTGAGCTTAAGGTAGCCTAGTACAAGGGGTTGCCTTAATAACAC
CAAAAATAATGTATTTGTATTTAGTTAATAGTCAGTCGTGCAATTAACATCCATGGATCG
CTTGTACATAGTATGCTCACCTTTGTAATCTTGGAATTTGGTAATGATAATGATAATGGC
TTAAGCCAAGCCATAAAATGCAACACCTTTAGCTTCAAAAAAAAAAAAAAAAAAAAACCC
AA
■■Homology search results ■■ -
sp_hit_id P46152
Definition sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norvegicus
Align length 75
Score (bit) 34.3
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956092|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_N10, 5'
         (456 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norveg...    34   0.26 
sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculu...    33   0.76 
sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapien...    32   1.3  
sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis famil...    32   1.3  
sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain AT...    30   6.4  
sp|B1ZBR8|GLMM_METPB Phosphoglucosamine mutase OS=Methylobacteri...    29   8.4  
sp|Q9BZ72|PITM2_HUMAN Membrane-associated phosphatidylinositol t...    29   8.6  

>sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus
           norvegicus GN=Gata4 PE=1 SV=1
          Length = 440

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 22/75 (29%), Positives = 33/75 (44%)
 Frame = -3

Query: 262 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 83
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANP-- 198

Query: 82  H*QFAPHPQLPLQHD 38
               A HP L +  D
Sbjct: 199 ----ARHPNLDMFDD 209


>sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=1 SV=3
          Length = 440

 Score = 32.7 bits (73), Expect = 0.76
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 262 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 83
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 82  H 80
           H
Sbjct: 201 H 201


>sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapiens
           GN=GATA4 PE=1 SV=2
          Length = 442

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = -3

Query: 262 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 83
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P    P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 82  H*QFAPHPQLPLQHD 38
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210


>sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis
           familiaris GN=GATA4 PE=2 SV=1
          Length = 442

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = -3

Query: 262 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 83
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P    P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 82  H*QFAPHPQLPLQHD 38
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210


>sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain ATCC
            1020 / DSM 3700 / NRRL 181) GN=myoA PE=3 SV=1
          Length = 1250

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 235  GEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHP-LQPLAH*QFAPHP 59
            GEP       TP+P+ +S    T+   LR  G     ++L+ RP P  QPL   +  P P
Sbjct: 975  GEPANSVSKPTPRPKQVSARPVTKGKLLRPGGPGGGPSKLAARPTPAAQPLP--RATPQP 1032

Query: 58   QLP 50
              P
Sbjct: 1033 AAP 1035


>sp|B1ZBR8|GLMM_METPB Phosphoglucosamine mutase OS=Methylobacterium
           populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
           GN=glmM PE=3 SV=1
          Length = 446

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 155 CHCLR-LPQL*KGSRFRSGEHL 217
           CHC   LPQ+ K  RFRSGE L
Sbjct: 364 CHCFEPLPQILKNVRFRSGEPL 385


>sp|Q9BZ72|PITM2_HUMAN Membrane-associated phosphatidylinositol
           transfer protein 2 OS=Homo sapiens GN=PITPNM2 PE=1 SV=1
          Length = 1349

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 198 NLEPFHSWGRRRQWH*EREAPPSTAQGCQFGRTPCSRWRIDSLRR 64
           N EP    G ++QW    ++  S+ +G    R   S WR+ S+ R
Sbjct: 291 NGEPLVGRGLKKQWSTSSKSSRSSKRGASPSRHSISEWRMQSIAR 335
tr_hit_id B8A9Y1
Definition tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 23
Score (bit) 39.3
E-value 0.099
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956092|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_N10, 5'
         (456 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.099
tr|A8JG52|A8JG52_CHLRE Predicted protein OS=Chlamydomonas reinha...    34   3.2  
tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus muscul...    33   9.3  

>tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05418 PE=4 SV=1
          Length = 502

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = -3

Query: 103 HPLQPLAH*QFAPHPQLPLQHDI 35
           HP QPL H Q  PHPQLP QHD+
Sbjct: 220 HPPQPLPHWQLEPHPQLPPQHDM 242


>tr|A8JG52|A8JG52_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_194715 PE=4 SV=1
          Length = 547

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
 Frame = +2

Query: 56  LWVRRKLSMRQRLQGVRPN--------*QPCAVEGGASRSQCHCLRLPQL*KGSRFRSGE 211
           L +RR L ++ RLQG +PN         QP  +   AS    H L  P      R RSG+
Sbjct: 44  LELRRALELQCRLQGPQPNATGPVLQPRQPLPLPPAASPQLLHDLGTPPTQSSGRLRSGQ 103

Query: 212 HLWVSW 229
             W  W
Sbjct: 104 LTWRYW 109


>tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=2 SV=1
          Length = 442

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 262 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 83
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 82  H 80
           H
Sbjct: 201 H 201