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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956109
Clone id TST39A01NGRL0024_O03
Library
Length 653
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_O03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GACAGAATGAGCCCGACCGCCATCGCTAGCTCTGAGATCTCCAACACCATGGATGCCCTC
TGCAGCGTCAACTTCTCTTTGCGTCAGTTTTCCATTCGGCGATGGTCGTCGTCTCCCCTG
CTCATTAACCGCCTGGCTATGCCGAGCTTTTCTCTGTGTGGTCCGTCCTCTTCATCTCCT
GCGAAACCCCTGATCATCGTTAGCTCTTACAGTCCAAGGCGGCCCTCTGATAGAAGCTAC
AGAAGGGACCAGCCGAACGTATACGAGCTCGACCTAGAGGAGCAGGTGTCACAGATTGAC
ATGGATTCCAACAAGATGCTTCAACCAGGAGACCCTAACTCTATGCAGGCCATCATCAAG
GATGTCATGCCTGTTGGCTACTTTGTTTCTCTTCCCACAGGCAGAGATGGCTACCTTCCT
GCAGATGATTTGGGTTTCACAGGTGGGCTTGCAATCTTGCGCAAGCTCTTCAAAGAAGGG
CAGGAGATCACTGTGCGAATTGTATGCAGAGGCGGGGCAGGAAGGGAGATTATTTCTGTG
AAAAAGCCAGAGTTTGCACCTCCAAGTGAGCAGAAGACCATTGAAAAGCTTAAGGCTTCA
TTTTGAGAATGAGAAGAAGAACAGGATGAATCCCCGGAAATCGGCGGCGTCAG
■■Homology search results ■■ -
sp_hit_id A6L0A5
Definition sp|A6L0A5|PNP_BACV8 Polyribonucleotide nucleotidyltransferase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)
Align length 50
Score (bit) 33.1
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956109|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_O03, 5'
         (653 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6L0A5|PNP_BACV8 Polyribonucleotide nucleotidyltransferase OS...    33   1.3  
sp|A0QVQ5|PNP_MYCS2 Polyribonucleotide nucleotidyltransferase OS...    33   1.7  
sp|Q64N73|PNP_BACFR Polyribonucleotide nucleotidyltransferase OS...    33   1.7  
sp|Q5L7Z7|PNP_BACFN Polyribonucleotide nucleotidyltransferase OS...    33   1.7  
sp|A5URV5|PNP_ROSS1 Polyribonucleotide nucleotidyltransferase OS...    32   2.2  
sp|Q0S208|PNP_RHOSR Polyribonucleotide nucleotidyltransferase OS...    32   2.2  
sp|Q8A4N6|PNP_BACTN Polyribonucleotide nucleotidyltransferase OS...    32   2.2  
sp|Q9P5N2|YH83_SCHPO Uncharacterized amino-acid permease C359.03...    32   2.9  
sp|O65405|CRK28_ARATH Cysteine-rich receptor-like protein kinase...    32   2.9  
sp|Q30TH2|PNP_SULDN Polyribonucleotide nucleotidyltransferase OS...    32   3.8  
sp|A6LFK9|PNP_PARD8 Polyribonucleotide nucleotidyltransferase OS...    32   3.8  
sp|P44442|RND_HAEIN Ribonuclease D OS=Haemophilus influenzae GN=...    31   6.5  
sp|Q31GJ9|PNP_THICR Polyribonucleotide nucleotidyltransferase OS...    30   8.5  

>sp|A6L0A5|PNP_BACV8 Polyribonucleotide nucleotidyltransferase
           OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 /
           NCTC 11154) GN=pnp PE=3 SV=1
          Length = 711

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 355 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV 504
           ++ VMP G FV    G+DG L   ++ +     I     KEG EI V+++
Sbjct: 636 VRSVMPYGVFVEFLPGKDGLLHISEIDWKRLETIEEAGLKEGDEIEVKLL 685


>sp|A0QVQ5|PNP_MYCS2 Polyribonucleotide nucleotidyltransferase
           OS=Mycobacterium smegmatis GN=pnp PE=3 SV=1
          Length = 763

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
 Frame = +1

Query: 268 LDLEEQVSQIDMDSNKMLQPGDPNSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGG 447
           L  +  + +I+  +N  L       +  ++K     G FVSL  GRDG +    LG    
Sbjct: 642 LSAQAAIDKINAIANPQLPKVGERFLGTVVKTT-DFGAFVSLLPGRDGLVHISKLGKGKR 700

Query: 448 LAILRKLFKEGQEITVRIV---CRGGAGREIISVKKPEFAPPSEQKTIEKLKAS 600
           +A +  + K G ++ V I     RG     +++ +  E A  +  K  EK + +
Sbjct: 701 IAKVEDVVKVGDKLRVEIADIDNRGKISLVLVAEESAESAESAGDKGAEKAEGA 754


>sp|Q64N73|PNP_BACFR Polyribonucleotide nucleotidyltransferase
           OS=Bacteroides fragilis GN=pnp PE=3 SV=1
          Length = 708

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 355 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV 504
           ++ +MP G FV    G+DG L   ++ +     +     KEG EI V+++
Sbjct: 636 VRSIMPYGAFVEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLI 685


>sp|Q5L7Z7|PNP_BACFN Polyribonucleotide nucleotidyltransferase
           OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
           GN=pnp PE=3 SV=1
          Length = 708

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 355 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV 504
           ++ +MP G FV    G+DG L   ++ +     +     KEG EI V+++
Sbjct: 636 VRSIMPYGAFVEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLI 685


>sp|A5URV5|PNP_ROSS1 Polyribonucleotide nucleotidyltransferase
           OS=Roseiflexus sp. (strain RS-1) GN=pnp PE=3 SV=1
          Length = 747

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 364 VMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV-CRGGAGREIIS 537
           +MP G FV+L  G+DG +   +L   G +  +  + K G EI V ++    G G+  +S
Sbjct: 639 IMPFGAFVNLAPGKDGMVHVSELD-VGRVENVEDVIKMGDEINVMVIGIEPGTGKVSLS 696


>sp|Q0S208|PNP_RHOSR Polyribonucleotide nucleotidyltransferase
           OS=Rhodococcus sp. (strain RHA1) GN=pnp PE=3 SV=1
          Length = 757

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
 Frame = +1

Query: 286 VSQIDMDSNKMLQPGDPNSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRK 465
           +  I+  +N  L       +  ++K     G FVSL  GRDG +    LG    +A +  
Sbjct: 654 IDMINAIANPQLPKVGERFLGTVVKTTA-FGAFVSLLPGRDGLVHISKLGSGKRIAKVED 712

Query: 466 LFKEGQEITVRIVCRGGAGR-EIISVKKPEFAPPSEQ 573
           +   G ++ V I      G+  +I V++   A P+EQ
Sbjct: 713 VVSVGSKLRVEIADIDNRGKISLIPVEEDGAAAPAEQ 749


>sp|Q8A4N6|PNP_BACTN Polyribonucleotide nucleotidyltransferase
           OS=Bacteroides thetaiotaomicron GN=pnp PE=3 SV=1
          Length = 708

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 355 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV 504
           ++ +MP G F+    G+DG L   ++ +     +     KEG EI V+++
Sbjct: 636 VRSIMPYGAFIEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLI 685


>sp|Q9P5N2|YH83_SCHPO Uncharacterized amino-acid permease C359.03c
           OS=Schizosaccharomyces pombe GN=SPBC359.03c PE=2 SV=1
          Length = 579

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = +1

Query: 328 GDPNSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVC 507
           G+   + A+IK V  VG+ +       G +P D  G+ GG  I +K F+ G +    +  
Sbjct: 212 GEVEFVLALIKVVATVGFIILAIIINCGGVPTDHRGYIGGSIIKQKPFRHGFKGFCSVYT 271

Query: 508 RGG---AGREIISVKKPEFAPP 564
                 +G EI+ +   E   P
Sbjct: 272 TAAFSFSGTEIVGLAAAEVGDP 293


>sp|O65405|CRK28_ARATH Cysteine-rich receptor-like protein kinase 28
           OS=Arabidopsis thaliana GN=CRK28 PE=2 SV=2
          Length = 683

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 382 FVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITV-RIVCRGGAG 522
           F +L    D + P ++LG  G  ++ + +F  GQEI V R+ C  G G
Sbjct: 351 FETLKAATDNFSPENELGRGGFGSVYKGVFSGGQEIAVKRLSCTSGQG 398


>sp|Q30TH2|PNP_SULDN Polyribonucleotide nucleotidyltransferase
           OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
           1251) GN=pnp PE=3 SV=1
          Length = 721

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 346 QAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV 504
           + I+K ++  G F+ LP G DG L    +     +  +  + KEG+EI V I+
Sbjct: 658 KGIVKKIVEFGAFIELPDGVDGLLHISKIS-DQRVEKVSDILKEGEEINVEIL 709
tr_hit_id A6E805
Definition tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylase OS=Pedobacter sp. BAL39
Align length 79
Score (bit) 40.4
E-value 0.095
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956109|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_O03, 5'
         (653 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylas...    40   0.095
tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genom...    40   0.12 
tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton th...    39   0.28 
tr|A6NQP1|A6NQP1_9BACE Putative uncharacterized protein OS=Bacte...    39   0.28 
tr|A9SJH6|A9SJH6_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.62 
tr|A4XKP1|A4XKP1_CALS8 Hydroxymethylbutenyl pyrophosphate reduct...    37   1.1  
tr|A7HME7|A7HME7_FERNB Hydroxymethylbutenyl pyrophosphate reduct...    37   1.4  
tr|B5YH71|B5YH71_THEYD 30S ribosomal protein S1 OS=Thermodesulfo...    36   1.8  
tr|A7I0M8|A7I0M8_CAMHC 30S ribosomal protein S1 OS=Campylobacter...    36   1.8  
tr|A1AM10|A1AM10_PELPD SSU ribosomal protein S1P OS=Pelobacter p...    35   3.1  
tr|B4U6I5|B4U6I5_HYDS0 RNA binding S1 domain protein OS=Hydrogen...    35   4.0  
tr|B1YGQ3|B1YGQ3_EXIS2 RNA binding S1 domain protein OS=Exiguoba...    35   4.0  
tr|A6LNG6|A6LNG6_THEM4 Hydroxymethylbutenyl pyrophosphate reduct...    35   4.0  
tr|Q3AFC3|Q3AFC3_CARHZ Ribonuclease R OS=Carboxydothermus hydrog...    35   5.2  
tr|Q08WR4|Q08WR4_STIAU RNA binding S1 OS=Stigmatella aurantiaca ...    35   5.2  
tr|Q1D6H1|Q1D6H1_MYXXD Ribosomal protein S1 family protein OS=My...    34   6.8  
tr|A4R541|A4R541_MAGGR Putative uncharacterized protein OS=Magna...    34   6.8  
tr|Q8KFN4|Q8KFN4_CHLTE Ribosomal protein S1 OS=Chlorobium tepidu...    34   8.9  
tr|B3QQD6|B3QQD6_CHLP8 RNA binding S1 domain protein OS=Chloroba...    34   8.9  
tr|Q7X1F1|Q7X1F1_9BACT Lfe154p1 (Fragment) OS=Leptospirillum fer...    34   8.9  
tr|Q1K2U0|Q1K2U0_DESAC TraB family protein OS=Desulfuromonas ace...    34   8.9  
tr|B6YKM5|B6YKM5_9BACT RNA binding S1 domain protein OS=Thermoto...    34   8.9  
tr|B2QDR6|B2QDR6_9BACL RNA binding S1 domain protein OS=Exiguoba...    34   8.9  
tr|O24288|O24288_PEA Polynucleotide phosphorylase OS=Pisum sativ...    34   8.9  
tr|Q22WE1|Q22WE1_TETTH Phosphatidylinositol 3-and 4-kinase famil...    34   8.9  

>tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylase
           OS=Pedobacter sp. BAL39 GN=PBAL39_00932 PE=4 SV=1
          Length = 715

 Score = 40.4 bits (93), Expect = 0.095
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
 Frame = +1

Query: 355 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGREII 534
           +K +MP G FV +  G+DG L   ++ +T  L  +  +FKEG ++ V+++     G+  +
Sbjct: 636 VKSIMPFGAFVEIMPGKDGLLHISEIDWT-RLETMDGVFKEGDKLQVKLLDIDKQGKMKL 694

Query: 535 SVK-------KPEFAPPSE 570
           S K       KPE AP ++
Sbjct: 695 SRKVLLPRPPKPEGAPANK 713


>tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016702001
           PE=4 SV=1
          Length = 553

 Score = 40.0 bits (92), Expect = 0.12
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
 Frame = +1

Query: 343 MQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTG-GLAILRKLFKEGQEITVRIVCRGGA 519
           ++  +K++   G F+SLP G +G+LP  +    G G  +     + GQE++VR++ R   
Sbjct: 266 LEGTVKNLNRAGAFISLPEGEEGFLPTSEEADEGFGNLMGGSSLQVGQEVSVRVL-RISR 324

Query: 520 GREIISVKKPEFAPPSEQK 576
           G+  +++KK E A   + K
Sbjct: 325 GQVTLTMKKEEDAEKLDLK 343


>tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton
           thalassium (strain ATCC 35110 / GB-78) GN=Ctha_0115 PE=4
           SV=1
          Length = 616

 Score = 38.9 bits (89), Expect = 0.28
 Identities = 25/96 (26%), Positives = 45/96 (46%)
 Frame = +1

Query: 355 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGREII 534
           I  ++  G  V LP+G DG++PA  L   GG+  +   FK G E+ ++++      + II
Sbjct: 486 IAQIIEKGVIVELPSGVDGFVPASHL-LQGGVRDINASFKVGDELPLKVIEFDRENKRII 544

Query: 535 SVKKPEFAPPSEQKTIEKLKASFXXXXXXQDESPEI 642
                 F   S+++  E +K         Q+ + E+
Sbjct: 545 LSALEYFKGKSKEEIEEYMKQHPKEKQEIQEATAEL 580


>tr|A6NQP1|A6NQP1_9BACE Putative uncharacterized protein
           OS=Bacteroides capillosus ATCC 29799 GN=BACCAP_00512
           PE=4 SV=1
          Length = 150

 Score = 38.9 bits (89), Expect = 0.28
 Identities = 21/63 (33%), Positives = 36/63 (57%)
 Frame = +1

Query: 376 GYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGREIISVKKPEF 555
           G FVSLP G+ G +   ++ ++  +  ++   KEGQE+ V+++     GR  +S+KK   
Sbjct: 20  GAFVSLPEGKSGLVHISEIAYSY-VNDVKDYLKEGQEVKVKVIGIDENGRINLSIKKAMD 78

Query: 556 APP 564
            PP
Sbjct: 79  PPP 81


>tr|A9SJH6|A9SJH6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165287 PE=4 SV=1
          Length = 833

 Score = 37.7 bits (86), Expect = 0.62
 Identities = 24/64 (37%), Positives = 33/64 (51%)
 Frame = +2

Query: 11  ARPPSLALRSPTPWMPSAASTSLCVSFPFGDGRRLPCSLTAWLCRAFLCVVRPLHLLRNP 190
           ++PP   LRSPTP   +AA ++   SF      R   +  A  C AF+C   P  LL+ P
Sbjct: 41  SQPPVKFLRSPTPTASTAAGSTSSTSFSTTTELR---AYMAHHCHAFVCPELPFRLLQTP 97

Query: 191 *SSL 202
            +SL
Sbjct: 98  LASL 101


>tr|A4XKP1|A4XKP1_CALS8 Hydroxymethylbutenyl pyrophosphate reductase
           OS=Caldicellulosiruptor saccharolyticus (strain ATCC
           43494 / DSM 8903) GN=Csac_1891 PE=4 SV=1
          Length = 662

 Score = 37.0 bits (84), Expect = 1.1
 Identities = 22/82 (26%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
 Frame = +1

Query: 352 IIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGREI 531
           +I ++   G  V+   G  G++PA ++ ++  +  ++KLFK G+++ VR++      ++I
Sbjct: 481 VIAEIRQKGIVVNFE-GLRGFVPASEISYSKRIEDVKKLFKVGEQVKVRVIDIDKQKKQI 539

Query: 532 -ISVKKPEFAPPSEQKTIEKLK 594
            +S+KK +     E + I+K+K
Sbjct: 540 YLSIKKTQ-----EDEWIKKVK 556


>tr|A7HME7|A7HME7_FERNB Hydroxymethylbutenyl pyrophosphate reductase
           OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM
           5306 / Rt17-B1) GN=Fnod_1233 PE=4 SV=1
          Length = 854

 Score = 36.6 bits (83), Expect = 1.4
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 16/132 (12%)
 Frame = +1

Query: 256 NVYELDLEEQVSQIDMDSNKMLQPGDPNSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLG 435
           N+ +  LEE   Q+  +   M Q G    ++ I+ ++ P G  + L     G +P ++L 
Sbjct: 297 NLKQEVLEESFEQLLKEHENMNQVGRGKIVEGIVTEITPTGLTIDLGGKVTGVVPLEEL- 355

Query: 436 FTGGLAILRKL--FKEGQEITVRI-VCRGGAGREIISVKKP-------------EFAPPS 567
                   ++L  +K G++I VR+       G  I+S KKP             E   P 
Sbjct: 356 -------FKELNEYKVGEQIKVRVEKINEEDGTAILSAKKPMEKIIFDEIQKAKENGKPV 408

Query: 568 EQKTIEKLKASF 603
             K IE++K  +
Sbjct: 409 SGKIIERIKGGY 420


>tr|B5YH71|B5YH71_THEYD 30S ribosomal protein S1
           OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 /
           DSM 11347 / YP87) GN=THEYE_A1770 PE=4 SV=1
          Length = 534

 Score = 36.2 bits (82), Expect = 1.8
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
 Frame = +1

Query: 256 NVYELDLEEQVSQIDMDSNKMLQP------------GDPNSMQAIIKDVMPVGYFVSLPT 399
           NV  LD++ +  +I + S K L+P            GD  S +  +K +   G FV LP 
Sbjct: 341 NVKVLDIDRENRKISL-SFKQLKPKPWEVVAKKYKVGDRISGK--VKTITDFGIFVRLPE 397

Query: 400 GRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV 504
           G DG +   D+ +T  +    ++FK+GQ++   I+
Sbjct: 398 GVDGLIHISDISWTKHIDHPSQIFKKGQKVDAVIL 432


>tr|A7I0M8|A7I0M8_CAMHC 30S ribosomal protein S1 OS=Campylobacter
           hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 /
           CH001A) GN=CHAB381_0481 PE=4 SV=1
          Length = 557

 Score = 36.2 bits (82), Expect = 1.8
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +1

Query: 319 LQPGDPNSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVR 498
           L+ GD  ++Q  + ++ P G FV L    +G+L   ++ +   +   +    EGQEI V 
Sbjct: 284 LEVGD--TIQVTVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDFISEGQEINVE 341

Query: 499 IVCRGGAGREI-ISVK 543
           +V   G  R + +S+K
Sbjct: 342 VVEINGDDRRLRVSLK 357


>tr|A1AM10|A1AM10_PELPD SSU ribosomal protein S1P OS=Pelobacter
           propionicus (strain DSM 2379) GN=Ppro_0750 PE=4 SV=1
          Length = 407

 Score = 35.4 bits (80), Expect = 3.1
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = +1

Query: 370 PVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGREI-ISVKK 546
           P G FV+LP G DG +    LG    ++  R++  EGQ + V++       R I +++  
Sbjct: 305 PFGAFVTLPCGLDGLIHISKLGGGKRISHPREVLSEGQAVEVKVEGIDRESRRIALALAG 364

Query: 547 PEFAPPSEQKTIEKLKAS 600
              A   E  T+E+ ++S
Sbjct: 365 AARAEEEEATTLEEYRSS 382