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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956116
Clone id TST39A01NGRL0024_O10
Library
Length 599
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_O10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTCGAATCTCACCTCGTCGCATAGTGTGACGGGTCAAATTCTATGAGAAGCCGCAAGCGT
TTCTGAGGCCGCAAATGAAACACAGTGGGACCCTTCTGGCTCCGTAGAACAACGCTTATC
GACACACCCACACACACTCTGCACACCCCTTCAGCTATTATTGCTGGGGAGCTTCCAATG
TGCTTGCATTTCTCCATACTCAATCTGTGAAGGCGCGCCGGCATTTCAAGACGCTGAGCT
GCTAAGAGATTGGCTACAGAGCGATGGCATCTCTTGTGCTTGGTGCTTCAGGTGCTATTG
TTTGTGGCCAGCCAAAGGAATTGACAGGCTCAAACACAAAGGGCTTCAATTCAATTCCGG
GCTTTAGAGGGCAACTAAGTTCTGGAGTGCTCCATGACAAGTGCCTGCTTGGATTTTCAA
GTACCAGCTCCACTCAAAGAAAGCATGCATGGTGGATTGCTAGGAGTGTCAGTGAGGAAG
CGGCTACTGAAATAGAGGGAGGTGTAATGGAAGTCGAGGATGAGGCTACACTGGAGCAAT
ACTTTCGAGAAGCTGGGGACAAACTGGTAGTTCTTGATATCTCCACCAAAACATGTGGA
■■Homology search results ■■ -
sp_hit_id Q5XHX6
Definition sp|Q5XHX6|TXND2_RAT Thioredoxin domain-containing protein 2 OS=Rattus norvegicus
Align length 41
Score (bit) 34.7
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956116|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_O10, 5'
         (599 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5XHX6|TXND2_RAT Thioredoxin domain-containing protein 2 OS=R...    35   0.38 
sp|Q6P902|TXND2_MOUSE Thioredoxin domain-containing protein 2 OS...    34   0.49 
sp|P29451|THIO_MACMU Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2    34   0.65 
sp|Q9XFH8|TRXF1_ARATH Thioredoxin F-type 1, chloroplastic OS=Ara...    33   1.4  
sp|Q69AB2|TXND8_MOUSE Thioredoxin domain-containing protein 8 OS...    32   1.9  
sp|P08628|THIO_RABIT Thioredoxin OS=Oryctolagus cuniculus GN=TXN...    32   1.9  
sp|Q54JW9|IMPCT_DICDI Protein IMPACT homolog OS=Dictyostelium di...    32   1.9  
sp|O22779|TRXL7_ARATH Thioredoxin-like 7, chloroplastic OS=Arabi...    31   4.2  
sp|Q9XFH9|TRXF2_ARATH Thioredoxin F-type 2, chloroplastic OS=Ara...    31   4.2  
sp|Q5R9M3|THIO_PONAB Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3      31   4.2  
sp|P10599|THIO_HUMAN Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3      31   4.2  
sp|O97508|THIO_HORSE Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3    31   4.2  
sp|O96952|THIO_GEOCY Thioredoxin OS=Geodia cydonium GN=THIO PE=3...    31   4.2  
sp|P29450|TRXF_PEA Thioredoxin F-type, chloroplastic OS=Pisum sa...    31   5.5  
sp|Q9W497|GR05A_DROME Gustatory receptor for trehalose OS=Drosop...    31   5.5  
sp|Q8BX90|FND3A_MOUSE Fibronectin type-III domain-containing pro...    31   5.5  
sp|P50413|THIO_SHEEP Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2        30   9.3  
sp|P82460|THIO_PIG Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3          30   9.3  
sp|O97680|THIO_BOVIN Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3        30   9.3  

>sp|Q5XHX6|TXND2_RAT Thioredoxin domain-containing protein 2
           OS=Rattus norvegicus GN=Txndc2 PE=1 SV=2
          Length = 550

 Score = 34.7 bits (78), Expect = 0.38
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 477 EAATEIEGGVMEVEDEATLEQYFREAGDKLVVLDISTKTCG 599
           E  T  EG V  ++D+   E+  ++AG+KLV +D S   CG
Sbjct: 438 EIETLEEGMVRVIKDKEEFEEVLKDAGEKLVAVDFSAPWCG 478


>sp|Q6P902|TXND2_MOUSE Thioredoxin domain-containing protein 2
           OS=Mus musculus GN=Txndc2 PE=1 SV=1
          Length = 515

 Score = 34.3 bits (77), Expect = 0.49
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 477 EAATEIEGGVMEVEDEATLEQYFREAGDKLVVLDISTKTCG 599
           E  T  EG V  ++D+   E+  ++AG+KLV +D S   CG
Sbjct: 403 EIETLEEGLVRVIKDKEEFEEVLKDAGEKLVAVDFSAAWCG 443


>sp|P29451|THIO_MACMU Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2
          Length = 105

 Score = 33.9 bits (76), Expect = 0.65
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 504 VMEVEDEATLEQYFREAGDKLVVLDISTKTCG 599
           V ++E +A  ++   +AGDKLVV+D S   CG
Sbjct: 2   VKQIESKAAFQEALDDAGDKLVVVDFSATWCG 33


>sp|Q9XFH8|TRXF1_ARATH Thioredoxin F-type 1, chloroplastic
           OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2
          Length = 178

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 24/64 (37%), Positives = 34/64 (53%)
 Frame = +3

Query: 408 LGFSSTSSTQRKHAWWIARSVSEEAATEIEGGVMEVEDEATLEQYFREAGDKLVVLDIST 587
           +GF S  S +R  +  +  S+  E      G V EV D+ T     + AG+KLVVLD+ T
Sbjct: 40  IGFCSLDSRKRGDSSVVRCSL--ETVNVSVGQVTEV-DKDTFWPIVKAAGEKLVVLDMYT 96

Query: 588 KTCG 599
           + CG
Sbjct: 97  QWCG 100


>sp|Q69AB2|TXND8_MOUSE Thioredoxin domain-containing protein 8
           OS=Mus musculus GN=Txndc8 PE=1 SV=1
          Length = 127

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = +3

Query: 504 VMEVEDEATLEQYFREAGDKLVVLDISTKTCG 599
           V  +++ + L++ F +AG+KLVV++ S K CG
Sbjct: 2   VKRIKNMSELKELFSDAGNKLVVVEFSAKWCG 33


>sp|P08628|THIO_RABIT Thioredoxin OS=Oryctolagus cuniculus GN=TXN
           PE=1 SV=2
          Length = 105

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 504 VMEVEDEATLEQYFREAGDKLVVLDISTKTCG 599
           V ++E ++  ++    AGDKLVV+D S   CG
Sbjct: 2   VKQIESKSAFQEVLDSAGDKLVVVDFSATWCG 33


>sp|Q54JW9|IMPCT_DICDI Protein IMPACT homolog OS=Dictyostelium
           discoideum GN=impact PE=3 SV=1
          Length = 345

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 524 LILDFHYTSL-YFSSRFLTDTPSNPPCMLSLSGAGT*KSKQALVMEH 387
           LI+D  Y  L YF  ++  + PSN P ++S+      KS Q++++ H
Sbjct: 83  LIIDTSYDYLIYFKFKYTKEYPSNEPPIISIKATWLQKSDQSILLSH 129


>sp|O22779|TRXL7_ARATH Thioredoxin-like 7, chloroplastic
           OS=Arabidopsis thaliana GN=At2g33270 PE=2 SV=1
          Length = 273

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 24/114 (21%), Positives = 43/114 (37%)
 Frame = +3

Query: 258 RAMASLVLGASGAIVCGQPKELTGSNTKGFNSIPGFRGQLSSGVLHDKCLLGFSSTSSTQ 437
           R  A +   +  ++ C  P+ ++ ++      I G  G +          +   ++    
Sbjct: 22  RDFAGISPKSISSLCCISPRLISCNHFSPRTLISGENGNILFSKKKIPAFVRCQTSLGIG 81

Query: 438 RKHAWWIARSVSEEAATEIEGGVMEVEDEATLEQYFREAGDKLVVLDISTKTCG 599
           R   WW           E++  +  V     L    R AGDKLVV+D  + +CG
Sbjct: 82  RNQKWW---------EKELKPNMKSVTSPQDLVVSLRNAGDKLVVVDFFSPSCG 126


>sp|Q9XFH9|TRXF2_ARATH Thioredoxin F-type 2, chloroplastic
           OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1
          Length = 185

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +3

Query: 471 SEEAATEIEGGVMEVEDEATLEQYFREAGDKLVVLDISTKTCG 599
           S E      G V EV D+ T     + AGDK+VVLD+ T+ CG
Sbjct: 69  SLETVNVTVGQVTEV-DKDTFWPIVKAAGDKIVVLDMYTQWCG 110


>sp|Q5R9M3|THIO_PONAB Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3
          Length = 106

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 504 VMEVEDEATLEQYFREAGDKLVVLDISTKTCG 599
           V ++E +   ++    AGDKLVV+D S   CG
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCG 33
tr_hit_id A9P253
Definition tr|A9P253|A9P253_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 91
Score (bit) 46.2
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956116|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_O10, 5'
         (599 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9P253|A9P253_PICSI Putative uncharacterized protein OS=Picea...    46   0.001
tr|A9NML1|A9NML1_PICSI Putative uncharacterized protein OS=Picea...    46   0.001
tr|Q6DGI6|Q6DGI6_DANRE Zgc:92903 OS=Danio rerio GN=zgc:92903 PE=...    37   0.67 
tr|A7PV50|A7PV50_VITVI Chromosome chr4 scaffold_32, whole genome...    37   0.87 
tr|B5XF92|B5XF92_SALSA Thioredoxin OS=Salmo salar GN=THIO PE=4 SV=1    35   2.5  
tr|B5XE86|B5XE86_SALSA Thioredoxin OS=Salmo salar GN=THIO PE=4 SV=1    34   5.6  
tr|A5WAH5|A5WAH5_PSEP1 AAA ATPase OS=Pseudomonas putida (strain ...    33   9.6  
tr|B6FUG8|B6FUG8_9CLOT Putative uncharacterized protein OS=Clost...    33   9.6  
tr|B8BVB7|B8BVB7_THAPS Thioredoxin f OS=Thalassiosira pseudonana...    33   9.6  
tr|A9TNJ0|A9TNJ0_PHYPA Predicted protein (Fragment) OS=Physcomit...    33   9.6  
tr|B4MTL8|B4MTL8_DROWI GK23868 OS=Drosophila willistoni GN=GK238...    33   9.6  

>tr|A9P253|A9P253_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 146

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 33/91 (36%), Positives = 48/91 (52%)
 Frame = +3

Query: 327 GSNTKGFNSIPGFRGQLSSGVLHDKCLLGFSSTSSTQRKHAWWIARSVSEEAATEIEGGV 506
           GSN   +  +  F    SS   H+     FS+++    K +  I  SVS  A  +  G V
Sbjct: 30  GSNCVDYGKLSSFSETRSSS--HNF----FSASTRLSLKGSRRIRCSVSNTAGGQ-HGNV 82

Query: 507 MEVEDEATLEQYFREAGDKLVVLDISTKTCG 599
           +  +D   LE+Y ++AGDKLVV+ +ST TCG
Sbjct: 83  IGADDGEKLEKYIQDAGDKLVVVAVSTTTCG 113


>tr|A9NML1|A9NML1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 195

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 33/91 (36%), Positives = 48/91 (52%)
 Frame = +3

Query: 327 GSNTKGFNSIPGFRGQLSSGVLHDKCLLGFSSTSSTQRKHAWWIARSVSEEAATEIEGGV 506
           GSN   +  +  F    SS   H+     FS+++    K +  I  SVS  A  +  G V
Sbjct: 30  GSNCVDYGKLSSFSETRSSS--HNF----FSASTRLSLKGSRRIRCSVSNTAGGQ-HGNV 82

Query: 507 MEVEDEATLEQYFREAGDKLVVLDISTKTCG 599
           +  +D   LE+Y ++AGDKLVV+ +ST TCG
Sbjct: 83  IGADDGEKLEKYIQDAGDKLVVVAVSTTTCG 113


>tr|Q6DGI6|Q6DGI6_DANRE Zgc:92903 OS=Danio rerio GN=zgc:92903 PE=2
           SV=1
          Length = 107

 Score = 37.4 bits (85), Expect = 0.67
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 504 VMEVEDEATLEQYFREAGDKLVVLDISTKTCG 599
           V+E+ED+A  +   + AGDKLVV+D +   CG
Sbjct: 2   VLEIEDKAAFDNALKNAGDKLVVVDFTATWCG 33


>tr|A7PV50|A7PV50_VITVI Chromosome chr4 scaffold_32, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025050001
           PE=4 SV=1
          Length = 172

 Score = 37.0 bits (84), Expect = 0.87
 Identities = 22/60 (36%), Positives = 33/60 (55%)
 Frame = +3

Query: 420 STSSTQRKHAWWIARSVSEEAATEIEGGVMEVEDEATLEQYFREAGDKLVVLDISTKTCG 599
           S  + +++ A  + RS S + A  + G V EV  + T     + AGDK VVLD+ T+ CG
Sbjct: 39  SVPTQEKRRARVVVRSSSIDTAEAVVGQVTEVNKD-TFWPIVKAAGDKAVVLDMYTQWCG 97


>tr|B5XF92|B5XF92_SALSA Thioredoxin OS=Salmo salar GN=THIO PE=4 SV=1
          Length = 108

 Score = 35.4 bits (80), Expect = 2.5
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 504 VMEVEDEATLEQYFREAGDKLVVLDISTKTCG 599
           ++E+ED+ +     +EAGDKLVV+D +   CG
Sbjct: 2   ILEIEDKDSFFSALKEAGDKLVVVDFTASWCG 33


>tr|B5XE86|B5XE86_SALSA Thioredoxin OS=Salmo salar GN=THIO PE=4 SV=1
          Length = 108

 Score = 34.3 bits (77), Expect = 5.6
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 504 VMEVEDEATLEQYFREAGDKLVVLDISTKTCG 599
           ++E+ED+ +     +EAGDKLVV+D +   CG
Sbjct: 2   ILEIEDKDSFFIALKEAGDKLVVVDFTASWCG 33


>tr|A5WAH5|A5WAH5_PSEP1 AAA ATPase OS=Pseudomonas putida (strain F1 /
            ATCC 700007) GN=Pput_5015 PE=4 SV=1
          Length = 1496

 Score = 33.5 bits (75), Expect = 9.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 188  ISPYSICEGAPAFQDAELLRDWLQSDGISCAWCF 289
            +S  S  +G+ AF D +L   +L+ DG+SC W F
Sbjct: 1410 VSGQSRDDGSHAFIDQDLFNTFLEEDGLSCIWVF 1443


>tr|B6FUG8|B6FUG8_9CLOT Putative uncharacterized protein
           OS=Clostridium nexile DSM 1787 GN=CLONEX_03803 PE=4 SV=1
          Length = 499

 Score = 33.5 bits (75), Expect = 9.6
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
 Frame = -1

Query: 302 NNST*STKHKR--CHRSV---ANLLAAQRLEMPARLHRLSMEKCKHIGSSPAIIAEGVC- 141
           N ST   + K+  CH +V      L+     MP  LH +S+E CK  G + A+I E  C 
Sbjct: 251 NLSTIQIERKKFICHSTVFFQIKDLSFSHKSMPELLHNISLEACK--GETIALIGENGCG 308

Query: 140 RVCVGVSISVVLRSQKG 90
           +  +G  +S ++R ++G
Sbjct: 309 KTTLGKVLSGLIRCRRG 325


>tr|B8BVB7|B8BVB7_THAPS Thioredoxin f OS=Thalassiosira pseudonana
           CCMP1335 GN=Trx-f PE=4 SV=1
          Length = 144

 Score = 33.5 bits (75), Expect = 9.6
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 504 VMEVEDEATLEQYFREAGDKLVVLDISTKTCG 599
           V++V  EA  +     AGDKLVV+D ST  CG
Sbjct: 38  VVDVNSEAEFDAKVSGAGDKLVVIDYSTTWCG 69


>tr|A9TNJ0|A9TNJ0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_8311 PE=4 SV=1
          Length = 112

 Score = 33.5 bits (75), Expect = 9.6
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = +3

Query: 498 GGVMEVEDEATLEQYFREAGDKLVVLDISTKTCG 599
           GG+ EV ++ T   + ++AG+K+VVLD+ T+ CG
Sbjct: 7   GGITEVGND-TFYPFLKDAGEKVVVLDMYTQWCG 39