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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956133
Clone id TST39A01NGRL0024_P04
Library
Length 431
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_P04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTCCACTTGGACGGTTTGCTGTTCGTGATATGAGGCAGACTGTTGCCGTGGGAGTCATCA
AGGCAGTGGAAAAGAAGGATGCCTCTGGTGCCAAGGTTACTAAGGCTGCCCTGAAGAAGA
AATGAACCAGACTTTGTGATGGTAGTGGGTCTGGTAGTTTTTTTGTGTGTTTTGATGCTT
CGGATGATATTATCTAGAGTGTTGCAGACATGGGTTTTGGATAGACGGTGGCGCGGTTTC
GCTGTGCTTCCTCCTCTTACCGGCCTTTTCTATTTACATGAACTTTGCCTAAGTAACTGA
TAATGTAGACAACTATGTTGTTTTGTTTTCTCCTGAATATTATGTTGAGGCTTTTCCTTT
GCTCTTGGATCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAGAAA
■■Homology search results ■■ -
sp_hit_id O49169
Definition sp|O49169|EF1A_MANES Elongation factor 1-alpha OS=Manihot esculenta
Align length 29
Score (bit) 55.8
E-value 6.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956133|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_P04, 5'
         (373 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O49169|EF1A_MANES Elongation factor 1-alpha OS=Manihot escule...    56   6e-08
sp|O24534|EF1A_VICFA Elongation factor 1-alpha OS=Vicia faba PE=...    55   1e-07
sp|P41166|EF1A_TRYBB Elongation factor 1-alpha OS=Trypanosoma br...    55   1e-07
sp|Q41011|EF1A_PEA Elongation factor 1-alpha OS=Pisum sativum PE...    55   1e-07
sp|Q41803|EF1A_MAIZE Elongation factor 1-alpha OS=Zea mays GN=EF...    55   1e-07
sp|P34823|EF1A2_DAUCA Elongation factor 1-alpha OS=Daucus carota...    55   1e-07
sp|Q03033|EF1A_WHEAT Elongation factor 1-alpha OS=Triticum aesti...    54   2e-07
sp|P08736|EF1A1_DROME Elongation factor 1-alpha 1 OS=Drosophila ...    54   2e-07
sp|P25698|EF1A_SOYBN Elongation factor 1-alpha OS=Glycine max GN...    54   3e-07
sp|O64937|EF1A_ORYSJ Elongation factor 1-alpha OS=Oryza sativa s...    54   3e-07
sp|P13905|EF1A_ARATH Elongation factor 1-alpha OS=Arabidopsis th...    54   3e-07
sp|Q8LPC4|EF1A_PORYE Elongation factor 1-alpha OS=Porphyra yezoe...    53   4e-07
sp|Q07051|EF1A_EIMBO Elongation factor 1-alpha (Fragment) OS=Eim...    53   4e-07
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha OS=Absidia glauca...    53   4e-07
sp|P50256|EF1AC_PORPU Elongation factor 1-alpha C OS=Porphyra pu...    53   4e-07
sp|P14865|EF1A3_RHIRA Elongation factor 1-alpha OS=Rhizomucor ra...    53   4e-07
sp|P14864|EF1A2_RHIRA Elongation factor 1-alpha OS=Rhizomucor ra...    53   4e-07
sp|Q40034|EF1A2_HORVU Elongation factor 1-alpha OS=Hordeum vulga...    53   4e-07
sp|P06805|EF1A1_RHIRA Elongation factor 1-alpha OS=Rhizomucor ra...    53   4e-07
sp|P34824|EF1A1_HORVU Elongation factor 1-alpha OS=Hordeum vulga...    53   4e-07
sp|O59949|EF1A_YARLI Elongation factor 1-alpha OS=Yarrowia lipol...    53   5e-07
sp|A5DPE3|EF1A_PICGU Elongation factor 1-alpha OS=Pichia guillie...    53   5e-07
sp|P16017|EF1A_CANAL Elongation factor 1-alpha OS=Candida albica...    53   5e-07
sp|P43643|EF1A_TOBAC Elongation factor 1-alpha OS=Nicotiana taba...    52   7e-07
sp|P29521|EF1A1_DAUCA Elongation factor 1-alpha OS=Daucus carota...    52   7e-07
sp|P17786|EF1A_SOLLC Elongation factor 1-alpha OS=Solanum lycope...    52   9e-07
sp|O42820|EF1A_SCHCO Elongation factor 1-alpha OS=Schizophyllum ...    52   9e-07
sp|Q9YIC0|EF1A_ORYLA Elongation factor 1-alpha OS=Oryzias latipe...    52   9e-07
sp|P53013|EF1A_CAEEL Elongation factor 1-alpha OS=Caenorhabditis...    52   9e-07
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form OS...    52   9e-07

>sp|O49169|EF1A_MANES Elongation factor 1-alpha OS=Manihot esculenta
           GN=EF1 PE=3 SV=1
          Length = 449

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVGVIK+VEKKD SG
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVEKKDPSG 436


>sp|O24534|EF1A_VICFA Elongation factor 1-alpha OS=Vicia faba PE=2
           SV=1
          Length = 447

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 26/29 (89%), Positives = 28/29 (96%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVGVIK+VEKKD +G
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436


>sp|P41166|EF1A_TRYBB Elongation factor 1-alpha OS=Trypanosoma
           brucei brucei GN=TEF1 PE=2 SV=2
          Length = 449

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 26/29 (89%), Positives = 27/29 (93%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVG+IKAV KKD SG
Sbjct: 408 PLGRFAVRDMRQTVAVGIIKAVTKKDGSG 436


>sp|Q41011|EF1A_PEA Elongation factor 1-alpha OS=Pisum sativum PE=2
           SV=1
          Length = 447

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 26/29 (89%), Positives = 28/29 (96%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVGVIK+VEKKD +G
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436


>sp|Q41803|EF1A_MAIZE Elongation factor 1-alpha OS=Zea mays GN=EF1A
           PE=3 SV=1
          Length = 447

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 26/29 (89%), Positives = 28/29 (96%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVGVIK+VEKKD +G
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436


>sp|P34823|EF1A2_DAUCA Elongation factor 1-alpha OS=Daucus carota
           PE=2 SV=1
          Length = 447

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 26/29 (89%), Positives = 28/29 (96%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVGVIK+VEKKD +G
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436


>sp|Q03033|EF1A_WHEAT Elongation factor 1-alpha OS=Triticum aestivum
           GN=TEF1 PE=2 SV=1
          Length = 447

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 26/29 (89%), Positives = 27/29 (93%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVGVIK VEKKD +G
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKGVEKKDPTG 436


>sp|P08736|EF1A1_DROME Elongation factor 1-alpha 1 OS=Drosophila
           melanogaster GN=Ef1alpha48D PE=1 SV=2
          Length = 463

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 27/29 (93%), Positives = 27/29 (93%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVGVIKAV  KDASG
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKAVNFKDASG 448


>sp|P25698|EF1A_SOYBN Elongation factor 1-alpha OS=Glycine max
           GN=TEFS1 PE=3 SV=2
          Length = 447

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 26/29 (89%), Positives = 27/29 (93%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVGVIK VEKKD +G
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436


>sp|O64937|EF1A_ORYSJ Elongation factor 1-alpha OS=Oryza sativa
           subsp. japonica GN=REFA1 PE=2 SV=2
          Length = 447

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 26/29 (89%), Positives = 27/29 (93%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVGVIK VEKKD +G
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436
tr_hit_id Q9LN13
Definition tr|Q9LN13|Q9LN13_ARATH Elongation factor 1-alpha OS=Arabidopsis thaliana
Align length 29
Score (bit) 53.5
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956133|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_P04, 5'
         (373 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9LN13|Q9LN13_ARATH Elongation factor 1-alpha OS=Arabidopsis ...    54   2e-08
tr|A6MWT3|A6MWT3_9VIRI Elongation factor 1-alpha (Fragment) OS=S...    57   5e-07
tr|Q9AVT7|Q9AVT7_PICAB Elongation factor 1-alpha (Fragment) OS=P...    56   1e-06
tr|Q5ME93|Q5ME93_PSEMZ Translation elongation factor-1 alpha (Fr...    56   1e-06
tr|Q5ME78|Q5ME78_PSEMZ Translation elongation factor-1 alpha (Fr...    56   1e-06
tr|Q5J1K3|Q5J1K3_ELAGV Elongation factor 1-alpha OS=Elaeis guine...    56   1e-06
tr|Q3LUL9|Q3LUL9_GOSHI Elongation factor 1-alpha OS=Gossypium hi...    56   1e-06
tr|Q1X8N4|Q1X8N4_PRUAR Elongation factor 1 alpha (Fragment) OS=P...    56   1e-06
tr|Q14K72|Q14K72_PLAAC Translation elongation factor 1 alpha (Fr...    56   1e-06
tr|Q0VJA7|Q0VJA7_PLAAC Elongation factor 1 alpha (Fragment) OS=P...    56   1e-06
tr|P93272|P93272_MALDO Elongation factor 1 alpha (Fragment) OS=M...    56   1e-06
tr|B8LPU5|B8LPU5_PICSI Putative uncharacterized protein OS=Picea...    56   1e-06
tr|B8LMD8|B8LMD8_PICSI Putative uncharacterized protein OS=Picea...    56   1e-06
tr|B6V864|B6V864_PRUPE Elongation factor 1-alpha OS=Prunus persi...    56   1e-06
tr|A9PH67|A9PH67_POPTR Elongation factor 1-alpha OS=Populus tric...    56   1e-06
tr|A9PG38|A9PG38_POPTR Elongation factor 1-alpha OS=Populus tric...    56   1e-06
tr|A9P004|A9P004_PICSI Putative uncharacterized protein OS=Picea...    56   1e-06
tr|A9NWR1|A9NWR1_PICSI Elongation factor 1-alpha OS=Picea sitche...    56   1e-06
tr|A9NUF4|A9NUF4_PICSI Elongation factor 1-alpha OS=Picea sitche...    56   1e-06
tr|A7PSZ7|A7PSZ7_VITVI Elongation factor 1-alpha OS=Vitis vinife...    56   1e-06
tr|A7M6H2|A7M6H2_MALDO Putative uncharacterized protein OS=Malus...    56   1e-06
tr|A5C4C2|A5C4C2_VITVI Elongation factor 1-alpha OS=Vitis vinife...    56   1e-06
tr|A5B1I3|A5B1I3_VITVI Putative uncharacterized protein OS=Vitis...    56   1e-06
tr|A5AFS1|A5AFS1_VITVI Elongation factor 1-alpha OS=Vitis vinife...    56   1e-06
tr|A9RGD5|A9RGD5_PHYPA Elongation factor 1-alpha OS=Physcomitrel...    55   1e-06
tr|Q4TBR8|Q4TBR8_TETNG Chromosome 21 SCAF7098, whole genome shot...    55   2e-06
tr|Q9ZRP9|Q9ZRP9_MALDO Elongation factor 1-alpha OS=Malus domest...    55   2e-06
tr|Q9XEW9|Q9XEW9_LILLO Elongation factor 1-alpha OS=Lilium longi...    55   2e-06
tr|Q9SB99|Q9SB99_CICAR Elongation factor 1-alpha (Fragment) OS=C...    55   2e-06
tr|Q9M7E6|Q9M7E6_MAIZE Elongation factor 1-alpha OS=Zea mays PE=...    55   2e-06

>tr|Q9LN13|Q9LN13_ARATH Elongation factor 1-alpha OS=Arabidopsis
           thaliana PE=3 SV=1
          Length = 967

 Score = 53.5 bits (127), Expect(2) = 2e-08
 Identities = 25/29 (86%), Positives = 28/29 (96%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVGVIK+V+KKD +G
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVDKKDPTG 436



 Score = 28.5 bits (62), Expect(2) = 2e-08
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 196 RVLQTWVLDRRWRGFA-VLPP 255
           R  + WVLDRRWR +  +LPP
Sbjct: 477 RCSRNWVLDRRWRIYTHILPP 497



 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 25/29 (86%), Positives = 28/29 (96%)
 Frame = +3

Query: 3    PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
            PLGRFAVRDMRQTVAVGVIK+V+KKD +G
Sbjct: 926  PLGRFAVRDMRQTVAVGVIKSVDKKDPTG 954


>tr|A6MWT3|A6MWT3_9VIRI Elongation factor 1-alpha (Fragment)
           OS=Spirogyra sp. FWAC125 PE=2 SV=1
          Length = 221

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 28/29 (96%), Positives = 28/29 (96%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVGVIKAVEKKD SG
Sbjct: 182 PLGRFAVRDMRQTVAVGVIKAVEKKDPSG 210


>tr|Q9AVT7|Q9AVT7_PICAB Elongation factor 1-alpha (Fragment)
           OS=Picea abies PE=2 SV=1
          Length = 444

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVGVIKAVEKKD +G
Sbjct: 405 PLGRFAVRDMRQTVAVGVIKAVEKKDPTG 433


>tr|Q5ME93|Q5ME93_PSEMZ Translation elongation factor-1 alpha
           (Fragment) OS=Pseudotsuga menziesii var. menziesii
           GN=EF1A PE=4 SV=1
          Length = 247

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVGVIKAVEKKD +G
Sbjct: 208 PLGRFAVRDMRQTVAVGVIKAVEKKDPTG 236


>tr|Q5ME78|Q5ME78_PSEMZ Translation elongation factor-1 alpha
           (Fragment) OS=Pseudotsuga menziesii GN=EF1A PE=4 SV=1
          Length = 247

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVGVIKAVEKKD +G
Sbjct: 208 PLGRFAVRDMRQTVAVGVIKAVEKKDPTG 236


>tr|Q5J1K3|Q5J1K3_ELAGV Elongation factor 1-alpha OS=Elaeis
           guineensis var. tenera GN=EF1-a1 PE=2 SV=1
          Length = 447

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVGVIK+VEKKD SG
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVEKKDPSG 436


>tr|Q3LUL9|Q3LUL9_GOSHI Elongation factor 1-alpha OS=Gossypium
           hirsutum GN=EF1A8 PE=2 SV=1
          Length = 449

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVGVIK+VEKKD SG
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVEKKDPSG 436


>tr|Q1X8N4|Q1X8N4_PRUAR Elongation factor 1 alpha (Fragment)
           OS=Prunus armeniaca PE=2 SV=1
          Length = 85

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVGVIK+VEKKD SG
Sbjct: 46  PLGRFAVRDMRQTVAVGVIKSVEKKDPSG 74


>tr|Q14K72|Q14K72_PLAAC Translation elongation factor 1 alpha
           (Fragment) OS=Platanus acerifolia GN=ef PE=2 SV=1
          Length = 236

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVGVIK+VEKKD SG
Sbjct: 197 PLGRFAVRDMRQTVAVGVIKSVEKKDPSG 225


>tr|Q0VJA7|Q0VJA7_PLAAC Elongation factor 1 alpha (Fragment)
           OS=Platanus acerifolia GN=efalpha PE=2 SV=1
          Length = 199

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVEKKDASG 89
           PLGRFAVRDMRQTVAVGVIK+VEKKD SG
Sbjct: 160 PLGRFAVRDMRQTVAVGVIKSVEKKDPSG 188