DK956147
Clone id TST39A01NGRL0024_P18
Library
Length 501
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_P18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GGAGTGAAAAGGGCCGTCGACAGTACAGACGACGGCCCCGACCTCCTTTAAAGGGTGGGG
CGGAAGATGGATTTTCTCCACGTGCAAACAGTACAACGCTCTCTCTCAAGCCCCCCCCCC
CCGCCCCAAAAAAAACACACACACACACACTATCGCACACGATCTCTCTTGCAATATATA
CAAGAAAGTTGAACAGACAGACGCACCTCTCTTTTCCTCTCAAACACACTCGCCATTATT
TCTGTCTAACCAGAGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACGA
CTTTGATCTGTGCACAGAAGCCCTATTTCTCTCTCCCTCTCCCACACACAGACACTCCAC
ACACGATCTGTCGTAATATGGGCAGCGCCATGGCTTCCTCGCGCTCCTCTGCTGCATTTT
CATCCCACTTACCCTCCCCCCGTAAGCTGACCTCTTCCCAGATGCAGAGCATTTCCCTGA
GGCCGCATCCCCCAACCCACA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK956147|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_P18, 5'
(501 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done

***** No hits found ******


tr_hit_id Q65ZG8
Definition tr|Q65ZG8|Q65ZG8_CAEEL Abnormal cell lineage protein 42, isoform b OS=Caenorhabditis elegans
Align length 65
Score (bit) 35.4
E-value 1.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK956147|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_P18, 5'
(501 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q65ZG8|Q65ZG8_CAEEL Abnormal cell lineage protein 42, isoform... 35 1.5
tr|P91314|P91314_CAEEL Abnormal cell lineage protein 42, isoform... 35 1.5
tr|A7MG55|A7MG55_ENTS8 Putative uncharacterized protein OS=Enter... 35 2.0
tr|B7S372|B7S372_9GAMM TonB-dependent receptor domain protein (F... 34 4.4
tr|B0JJZ4|B0JJZ4_MICAN Putative uncharacterized protein OS=Micro... 33 5.7

>tr|Q65ZG8|Q65ZG8_CAEEL Abnormal cell lineage protein 42, isoform b
OS=Caenorhabditis elegans GN=lin-42 PE=2 SV=1
Length = 597

Score = 35.4 bits (80), Expect = 1.5
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +2

Query: 68 WIFSTCKQYNALSQAPPPRPKKNTH-THTIAHDL----SCNIYKKVEQTDAPLFSSQTHS 232
W S+ Y ++ APPP P KN T+T DL S N VE P+ S+ +
Sbjct: 489 WTSSSQNHYRTMAPAPPPPPGKNYQITYTPLDDLTDQKSTNTKSDVENVAYPISGSKFST 548

Query: 233 PLFLS 247
P+ LS
Sbjct: 549 PMRLS 553


>tr|P91314|P91314_CAEEL Abnormal cell lineage protein 42, isoform a
OS=Caenorhabditis elegans GN=lin-42 PE=2 SV=2
Length = 297

Score = 35.4 bits (80), Expect = 1.5
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +2

Query: 68 WIFSTCKQYNALSQAPPPRPKKNTH-THTIAHDL----SCNIYKKVEQTDAPLFSSQTHS 232
W S+ Y ++ APPP P KN T+T DL S N VE P+ S+ +
Sbjct: 189 WTSSSQNHYRTMAPAPPPPPGKNYQITYTPLDDLTDQKSTNTKSDVENVAYPISGSKFST 248

Query: 233 PLFLS 247
P+ LS
Sbjct: 249 PMRLS 253


>tr|A7MG55|A7MG55_ENTS8 Putative uncharacterized protein
OS=Enterobacter sakazakii (strain ATCC BAA-894)
GN=ESA_03439 PE=4 SV=1
Length = 554

Score = 35.0 bits (79), Expect = 2.0
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = -1

Query: 498 GLGDAASGKCSASGKRSAYGGRVSGMKMQQRS----ARKPWRCPYYDRSCVEC 352
G G G+C SGK S YG SG M+QRS K R Y SC C
Sbjct: 133 GSGSVNCGQCHGSGKTSCYGCGGSGQVMRQRSYYDHYTKQNRTENYYESCPTC 185


>tr|B7S372|B7S372_9GAMM TonB-dependent receptor domain protein
(Fragment) OS=marine gamma proteobacterium HTCC2148
GN=GPB2148_1914 PE=4 SV=1
Length = 524

Score = 33.9 bits (76), Expect = 4.4
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +2

Query: 11 GPSTVQTTAPTSFKGWGGRWIFSTCKQ---YNALSQAPPPRPKKNTHTHTIAHDLS 169
G VQT ++ W G W+ ++ Q Y L A PR + N TI+HD S
Sbjct: 201 GVRVVQTDVESTGYNWDGDWLAASIDQIGGYQLLVDALDPRGEFNVRQETISHDYS 256


>tr|B0JJZ4|B0JJZ4_MICAN Putative uncharacterized protein
OS=Microcystis aeruginosa (strain NIES-843) GN=MAE_60260
PE=4 SV=1
Length = 557

Score = 33.5 bits (75), Expect = 5.7
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2

Query: 44 SFKGWG--GRWIFSTCKQYNALSQAPPPRPKKNTHTHTIAHDLSCNIYKKVEQTDAP 208
+F WG G + ST L A P ++ + IAHD+ N YK+V++ + P
Sbjct: 396 AFGSWGTFGNCVGSTLAVAKILFYAKNPAAQRQLYLEAIAHDVFANGYKEVQRLEEP 452