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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956166
Clone id TST39A01NGRL0025_A13
Library
Length 508
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_A13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ACTAGCACTTCGGCGGCTTGGACAGCTGAAGCTTGTCACCTGCAGCAGATATGGCGCGCC
TGTCCGTTGCGCTGCTTCTGCTCTTCGCAATGTGTGCCTTCATTGCTAGCCCTGCCCTTG
CGCGCAGGTCTACTAGGAGGCTCAACAGCGGCTACCCTAAGAAGGGCTCGTCTGACTCGT
CGCCTTCCACAAGCTCTCCATACCCATCGGGCGGGTCGCCCTCTTCTGGAAGCTCGCCCT
CATCTGGAAGCTCTCCTTCTGGTAGCTCTCCGTCATCATCCACACCATCCATCACTGTTC
CGCCAGTGATCTCATCTCCTTCCCCAGTAACCATTCCCCCGGTGACGTCGACTCCTTCTG
GTGGTTATGGAGGATATGGGTCTCGAAGCGGTATGGGAACGTCAGGGTTCTTTGGACGCA
ACCCTGCCAGGATTCCAAAGATTCTGTCGCTGGTGTCAACGATTGCAAAGCTAGTTTGGC
CCTCGGCTACTGAAGTTTTTTGCAGGGA
■■Homology search results ■■ -
sp_hit_id Q5TG08
Definition sp|Q5TG08|YV009_HUMAN Putative uncharacterized protein LOC388900 OS=Homo sapiens
Align length 29
Score (bit) 30.4
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956166|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_A13, 5'
         (490 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5TG08|YV009_HUMAN Putative uncharacterized protein LOC388900...    30   4.5  

>sp|Q5TG08|YV009_HUMAN Putative uncharacterized protein LOC388900
           OS=Homo sapiens PE=1 SV=2
          Length = 646

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 272 HHCSASDLISFPSNHSPGDV--DSFWWLW 352
           H CS  +L  F S+ SP  +  DSFWW++
Sbjct: 168 HFCSGRELEKFLSSSSPRAIWLDSFWWIF 196
tr_hit_id Q87QC3
Definition tr|Q87QC3|Q87QC3_VIBPA Putative uncharacterized protein VP1226 OS=Vibrio parahaemolyticus
Align length 59
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956166|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_A13, 5'
         (490 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q87QC3|Q87QC3_VIBPA Putative uncharacterized protein VP1226 O...    36   0.84 
tr|A6B4Q8|A6B4Q8_VIBPA ABC-type antimicrobial peptide transport ...    36   0.84 
tr|A5L5Q9|A5L5Q9_9GAMM Putative uncharacterized protein OS=Vibri...    33   5.5  
tr|A8T1W8|A8T1W8_9VIBR Putative uncharacterized protein OS=Vibri...    33   7.1  
tr|A3UYG6|A3UYG6_VIBSP Putative uncharacterized protein OS=Vibri...    33   7.1  

>tr|Q87QC3|Q87QC3_VIBPA Putative uncharacterized protein VP1226
           OS=Vibrio parahaemolyticus GN=VP1226 PE=4 SV=1
          Length = 836

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
 Frame = +2

Query: 284 ASDLISFPSNHSPG----------DVDSFWWLWRIWVSKRYGNVRVLWTQPCQDSKDSV 430
           A+D+  +P+N+S G          +V+S WW W   V   +G ++V+ T P +   DS+
Sbjct: 517 AADIYIYPTNNSAGRMSAWLQDQPEVESVWWRWEKDVPTEHGALQVVSTGPSEGELDSL 575


>tr|A6B4Q8|A6B4Q8_VIBPA ABC-type antimicrobial peptide transport
           system, permease component OS=Vibrio parahaemolyticus
           AQ3810 GN=A79_1929 PE=4 SV=1
          Length = 817

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
 Frame = +2

Query: 284 ASDLISFPSNHSPG----------DVDSFWWLWRIWVSKRYGNVRVLWTQPCQDSKDSV 430
           A+D+  +P+N+S G          +V+S WW W   V   +G ++V+ T P +   DS+
Sbjct: 498 AADIYIYPTNNSAGRMSAWLQDQPEVESVWWRWEKDVPTEHGALQVVSTGPSEGELDSL 556


>tr|A5L5Q9|A5L5Q9_9GAMM Putative uncharacterized protein
           OS=Vibrionales bacterium SWAT-3 GN=VSWAT3_05381 PE=4
           SV=1
          Length = 817

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
 Frame = +2

Query: 284 ASDLISFPSNHSPG----------DVDSFWWLWRIWVSKRYGNVRVLWTQPCQDSKDSV 430
           A+DL  +P+N++            +VDS WW W   V+   G+++V+ T P +   +++
Sbjct: 498 AADLYIYPTNNAAARMSNWLSEQPEVDSVWWRWEKDVASPVGSIQVVSTGPSEGELEAL 556


>tr|A8T1W8|A8T1W8_9VIBR Putative uncharacterized protein OS=Vibrio
           campbellii AND4 GN=AND4_02648 PE=4 SV=1
          Length = 817

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
 Frame = +2

Query: 284 ASDLISFPSNHSPG----------DVDSFWWLWRIWVSKRYGNVRVLWTQPCQDSKDSV 430
           A+DL  +P+N+S            +VD+ WW W   V    G ++V+ T   Q  +DS+
Sbjct: 498 AADLYIYPTNNSSARMSTWLKEQPEVDAVWWRWEKDVPTERGALQVVSTGTSQGERDSL 556


>tr|A3UYG6|A3UYG6_VIBSP Putative uncharacterized protein OS=Vibrio
           splendidus 12B01 GN=V12B01_03678 PE=4 SV=1
          Length = 817

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
 Frame = +2

Query: 284 ASDLISFPSNHSPG----------DVDSFWWLWRIWVSKRYGNVRVLWTQPCQDSKDSV 430
           A+DL  +P+N+             +VDS WW W   V+   G+++V+ T P +   +++
Sbjct: 498 AADLYIYPTNNGAARMSNWLSEQPEVDSVWWRWEKDVASPVGSIQVVSTGPSEGELEAL 556