BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956178|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_B01, 5'
         (545 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O08852|PKD1_MOUSE Polycystin-1 OS=Mus musculus GN=Pkd1 PE=2 SV=1    31   3.4  
sp|Q2H731|EIF3C_CHAGB Eukaryotic translation initiation factor 3...    31   3.4  
sp|Q9Y485|DMXL1_HUMAN DmX-like protein 1 OS=Homo sapiens GN=DMXL...    31   3.4  
sp|Q4FLL2|RPOB_PELUB DNA-directed RNA polymerase subunit beta OS...    30   5.8  
sp|Q8VG03|OL482_MOUSE Olfactory receptor 482 OS=Mus musculus GN=...    30   5.8  

>sp|O08852|PKD1_MOUSE Polycystin-1 OS=Mus musculus GN=Pkd1 PE=2 SV=1
          Length = 4293

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 308  NMKVLTIKPKPYLTGYLHNRTQPN 237
            N + L+ +P+PYL  YLH+ +QPN
Sbjct: 2922 NERYLSAEPEPYLAVYLHSVSQPN 2945


>sp|Q2H731|EIF3C_CHAGB Eukaryotic translation initiation factor 3
           subunit C OS=Chaetomium globosum GN=NIP1 PE=3 SV=1
          Length = 863

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 166 LLGPDQERT*EEGNIVLYTEPRPKQLFRIDQIVDAHPANFKHRLT 32
           +LGPD +     G++V Y E    +L R  Q +D H + +  RLT
Sbjct: 353 ILGPDDKYIKVPGSVVSYIERLDDELTRSLQSIDPHTSEYIERLT 397


>sp|Q9Y485|DMXL1_HUMAN DmX-like protein 1 OS=Homo sapiens GN=DMXL1
            PE=1 SV=2
          Length = 3027

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 284  PKPYLTGYLHNRTQPNFRTTESSPNLGTTRLKT 186
            PKPYLT   HN+T  +F    SS  + T  L T
Sbjct: 2828 PKPYLTWQCHNKTANDFVFVSSSSLIATAGLST 2860


>sp|Q4FLL2|RPOB_PELUB DNA-directed RNA polymerase subunit beta
           OS=Pelagibacter ubique GN=rpoB PE=3 SV=1
          Length = 1363

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -1

Query: 347 KLNFLYALRIAKGNMKVLTIKPKPYLTGYLHNRTQPNFRTTESSPNLGT 201
           K+NFL A ++A   +K + +  +  +  YLHN  + +    E +  +GT
Sbjct: 277 KINFLTAKKLASDGLKDILVSQESLIGKYLHNEVKVSDDEEEGTFGIGT 325


>sp|Q8VG03|OL482_MOUSE Olfactory receptor 482 OS=Mus musculus
           GN=Olfr482 PE=2 SV=1
          Length = 323

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +2

Query: 104 GFSV*YNVALFLGSLLVWAKQLLLIENMFSI---LSYLGLVSFQLCESLVVSCYVGSQ*G 274
           G S+ +  A F G L  +   ++  +   +I   L Y   +S Q+C  LVV  Y+GS   
Sbjct: 99  GCSIQFGSATFFGVLECFLLAVMAYDRFVAICNPLLYSIKMSTQVCVKLVVGSYIGSSLN 158

Query: 275 KVWV*LSTPSCFPLLF 322
             +V   T S F LLF
Sbjct: 159 ASFV---TVSIFNLLF 171

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956178|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_B01, 5'
         (545 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6FJW3|A6FJW3_9RHOB Putative uncharacterized protein OS=Roseo...    34   4.4  

>tr|A6FJW3|A6FJW3_9RHOB Putative uncharacterized protein
           OS=Roseobacter sp. AzwK-3b GN=RAZWK3B_00635 PE=4 SV=1
          Length = 161

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 474 ENQDQHGKLIQAHSMPGTALSSDIQSNSMADVIPGDDV 361
           EN+DQ   ++  H +PG  +S D+ +N MA  + G +V
Sbjct: 87  ENKDQLTAILTYHVVPGKVMSGDLSNNMMAATVQGGEV 124