DK956184 |
Clone id |
TST39A01NGRL0025_B07 |
Library |
TST39 |
Length |
626 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_B07. 5' end sequence. |
Accession |
DK956184 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL378Contig1 |
Sequence |
GGCAATCTTCTGACGGGGAGCCCCGAGCCCGACAGCCACAGCCATGGCTGCAGCAGTCAA GCTCACTTCCTCTTCTGTGGCTTCTTCCCCCACCATGCAGCCCCTGTATCTGCGAACAGG TTTCCATGGTTCCTCTTTACCGTCCTCCTCCTTCTCGGCTACACCTGCTTCAACAGGTAG CAGCTACAAGCTGGTCGTGTGCATGGCTTCCTCCACAGATCAGCCGATAATCATAGGGCT TGCTGCAGACTCTGGATGTGGAAAGAGTACATTCATGCGGCGGTTGACGAGCGTCTTCGG GGGTGCTGCGTCCCCTCCCAAGGGGGGTAACCCAGACTCCAACACTCTGATCAGTGACAC CACTACTGTGATATGCTTGGATGATTACCATTCTCTGGACCGCACCGGTCGAAAGCAGAA GGGTGTTACAGCGCTTGACCCTCGGGCGAACAACTTTGATCTCATGTATGAACAGGTGAA GGCGATTAAAGAAGGGAAGTCCATTGAGAAGCCCATCTACAACCATGTGACAGGCCTTTT GGATCCTCCGGAAACTATCCAGCCCCCCAAAATTTTTGTCATTGAGGGCCTGCATCCCAT GTTTGATGCACGAGTTCGCGAGCTTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P26302 |
Definition |
sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triticum aestivum |
Align length |
141 |
Score (bit) |
262.0 |
E-value |
9.0e-70 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956184|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0025_B07, 5' (626 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triti... 262 9e-70 sp|P27774|KPPR_MESCR Phosphoribulokinase, chloroplastic OS=Mesem... 256 5e-68 sp|P09559|KPPR_SPIOL Phosphoribulokinase, chloroplastic OS=Spina... 248 2e-65 sp|P25697|KPPR_ARATH Phosphoribulokinase, chloroplastic OS=Arabi... 245 1e-64 sp|P19824|KPPR_CHLRE Phosphoribulokinase, chloroplastic OS=Chlam... 221 3e-57 sp|P37101|KPPR_SYNY3 Phosphoribulokinase OS=Synechocystis sp. (s... 181 2e-45 sp|P85112|KPPR_VITSX Phosphoribulokinase, chloroplastic (Fragmen... 115 2e-25 sp|Q17413|UCK_CAEEL Probable uridine-cytidine kinase OS=Caenorha... 67 6e-11 sp|Q9PQF9|URK_UREPA Uridine kinase OS=Ureaplasma parvum GN=udk P... 60 1e-08 sp|B1AIX1|URK_UREP2 Uridine kinase OS=Ureaplasma parvum serovar ... 60 1e-08 sp|Q9Z7H0|URK_CHLPN Uridine kinase OS=Chlamydia pneumoniae GN=ud... 53 1e-06 sp|P67408|URK_SALTY Uridine kinase OS=Salmonella typhimurium GN=... 51 4e-06 sp|P67409|URK_SALTI Uridine kinase OS=Salmonella typhi GN=udk PE... 51 4e-06 sp|A9N7M0|URK_SALPB Uridine kinase OS=Salmonella paratyphi B (st... 51 4e-06 sp|Q5PDX6|URK_SALPA Uridine kinase OS=Salmonella paratyphi A GN=... 51 4e-06 sp|Q57MN1|URK_SALCH Uridine kinase OS=Salmonella choleraesuis GN... 51 4e-06 sp|A5VKU8|URK_LACRD Uridine kinase OS=Lactobacillus reuteri (str... 50 1e-05 sp|A7MHG8|URK_ENTS8 Uridine kinase OS=Enterobacter sakazakii (st... 50 1e-05 sp|P0A8F7|URK_SHIFL Uridine kinase OS=Shigella flexneri GN=udk P... 49 2e-05 sp|A1S796|URK_SHEAM Uridine kinase OS=Shewanella amazonensis (st... 49 2e-05 sp|P0A8F4|URK_ECOLI Uridine kinase OS=Escherichia coli (strain K... 49 2e-05 sp|P0A8F5|URK_ECOL6 Uridine kinase OS=Escherichia coli O6 GN=udk... 49 2e-05 sp|P0A8F6|URK_ECO57 Uridine kinase OS=Escherichia coli O157:H7 G... 49 2e-05 sp|Q8XJI6|URK_CLOPE Uridine kinase OS=Clostridium perfringens GN... 49 2e-05 sp|Q0TPI4|URK_CLOP1 Uridine kinase OS=Clostridium perfringens (s... 49 2e-05 sp|P27515|URK1_YEAST Uridine kinase OS=Saccharomyces cerevisiae ... 49 2e-05 sp|Q92BL6|URK_LISIN Uridine kinase OS=Listeria innocua GN=udk PE... 48 5e-05 sp|Q8Y727|URK_LISMO Uridine kinase OS=Listeria monocytogenes GN=... 47 6e-05 sp|Q88WR0|URK_LACPL Uridine kinase OS=Lactobacillus plantarum GN... 47 6e-05 sp|Q9KDD8|URK_BACHD Uridine kinase OS=Bacillus halodurans GN=udk... 47 6e-05
>sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1 Length = 404
Score = 262 bits (670), Expect = 9e-70 Identities = 125/141 (88%), Positives = 135/141 (95%) Frame = +2
Query: 203 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 382 ++ + +QPI+IGLAADSGCGKSTFMRRLTSVFGGAA PPKGGNPDSNTLISDTTTVICLD Sbjct: 51 VSCAVEQPIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLD 110
Query: 383 DYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQ 562 DYHSLDRTGRK+KGVTALDP+AN+FDLMYEQVKAIKEGK+IEKPIYNHVTGLLDP E IQ Sbjct: 111 DYHSLDRTGRKEKGVTALDPKANDFDLMYEQVKAIKEGKAIEKPIYNHVTGLLDPAELIQ 170
Query: 563 PPKIFVIEGLHPMFDARVREL 625 PPKIFVIEGLHPM+D RVREL Sbjct: 171 PPKIFVIEGLHPMYDERVREL 191
>sp|P27774|KPPR_MESCR Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1 Length = 397
Score = 256 bits (655), Expect = 5e-68 Identities = 122/145 (84%), Positives = 136/145 (93%) Frame = +2
Query: 191 LVVCMASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTV 370 ++ C+A + Q I+IGLAADSGCGKSTFMRRLTSVFGGAA PP+GGNPDSNTLISDTTTV Sbjct: 41 VITCLAGDS-QTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPDSNTLISDTTTV 99
Query: 371 ICLDDYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPP 550 ICLDDYHSLDRTGRK+KGVTALDPRAN+FDLMYEQVKA+KEGK++EKPIYNHVTGLLD P Sbjct: 100 ICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKEGKAVEKPIYNHVTGLLDAP 159
Query: 551 ETIQPPKIFVIEGLHPMFDARVREL 625 E I+PPKI VIEGLHPMFD+RVR+L Sbjct: 160 ELIKPPKILVIEGLHPMFDSRVRDL 184
>sp|P09559|KPPR_SPIOL Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1 Length = 402
Score = 248 bits (633), Expect = 2e-65 Identities = 118/138 (85%), Positives = 129/138 (93%) Frame = +2
Query: 212 STDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYH 391 S Q I+IGLAADSGCGKSTFMRRLTSVFGGAA PPKGGNPDSNTLISDTTTVICLDD+H Sbjct: 52 SQQQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDFH 111
Query: 392 SLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQPPK 571 SLDR GRK + VTALDP+AN+FDLMYEQVKA+KEGK+++KPIYNHV+GLLDPPE IQPPK Sbjct: 112 SLDRNGRKVEKVTALDPKANDFDLMYEQVKALKEGKAVDKPIYNHVSGLLDPPELIQPPK 171
Query: 572 IFVIEGLHPMFDARVREL 625 I VIEGLHPM+DARVREL Sbjct: 172 ILVIEGLHPMYDARVREL 189
>sp|P25697|KPPR_ARATH Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=1 SV=1 Length = 395
Score = 245 bits (626), Expect = 1e-64 Identities = 117/141 (82%), Positives = 128/141 (90%) Frame = +2
Query: 203 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 382 + + + I+IGLAADSGCGKSTFMRRLTSVFGGAA PPKGGNPDSNTLISDTTTVICLD Sbjct: 43 LITCAQETIVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLD 102
Query: 383 DYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQ 562 DYHSLDR GRK++ VTALDPRAN+FDLMYEQVKA+K G ++EKPIYNHVTGLLDPPE IQ Sbjct: 103 DYHSLDRYGRKEQKVTALDPRANDFDLMYEQVKALKNGIAVEKPIYNHVTGLLDPPELIQ 162
Query: 563 PPKIFVIEGLHPMFDARVREL 625 PPKI VIEGLHPMFD RVR+L Sbjct: 163 PPKILVIEGLHPMFDERVRDL 183
>sp|P19824|KPPR_CHLRE Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1 Length = 375
Score = 221 bits (562), Expect = 3e-57 Identities = 103/136 (75%), Positives = 115/136 (84%) Frame = +2
Query: 218 DQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYHSL 397 D+ ++IGLAADSGCGKSTFMRR+TS+FGG PP GGNPDSNTLISD TTVICLDDYH L Sbjct: 34 DKTVVIGLAADSGCGKSTFMRRMTSIFGGVPKPPAGGNPDSNTLISDMTTVICLDDYHCL 93
Query: 398 DRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQPPKIF 577 DR GRK KGVTAL P A NFDLMY QVKA+KEGKS++KPIYNHV+GL+D PE I+ P I Sbjct: 94 DRNGRKVKGVTALAPEAQNFDLMYNQVKALKEGKSVDKPIYNHVSGLIDAPEKIESPPIL 153
Query: 578 VIEGLHPMFDARVREL 625 VIEGLHP +D RV EL Sbjct: 154 VIEGLHPFYDKRVAEL 169
>sp|P37101|KPPR_SYNY3 Phosphoribulokinase OS=Synechocystis sp. (strain PCC 6803) GN=prk PE=2 SV=1 Length = 332
Score = 181 bits (460), Expect = 2e-45 Identities = 88/141 (62%), Positives = 104/141 (73%) Frame = +2
Query: 203 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 382 M + D+ ++IG+A DSGCGKSTF+RRLT +FG + TVICLD Sbjct: 1 MTTQLDRVVLIGVAGDSGCGKSTFLRRLTDLFG-----------------EEFMTVICLD 43
Query: 383 DYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQ 562 DYHSLDR GRK GVTALDPRANNFDLMYEQ+K +K G+SI KPIYNH TGLLDPPE ++ Sbjct: 44 DYHSLDRQGRKAAGVTALDPRANNFDLMYEQIKTLKSGQSIMKPIYNHETGLLDPPEKVE 103
Query: 563 PPKIFVIEGLHPMFDARVREL 625 P K+ VIEGLHP++D RVREL Sbjct: 104 PNKVVVIEGLHPLYDERVREL 124
>sp|P85112|KPPR_VITSX Phosphoribulokinase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1 Length = 89
Score = 115 bits (287), Expect = 2e-25 Identities = 57/66 (86%), Positives = 59/66 (89%) Frame = +2
Query: 284 LTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKQKGVTALDPRANNFDL 463 LTSVFGGAA PP+GGNPDSNTLISDTTTVICLDDYHSLDR GVTALDPRAN+FDL Sbjct: 1 LTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHSLDR------GVTALDPRANDFDL 54
Query: 464 MYEQVK 481 MYEQVK Sbjct: 55 MYEQVK 60
>sp|Q17413|UCK_CAEEL Probable uridine-cytidine kinase OS=Caenorhabditis elegans GN=B0001.4 PE=2 SV=2 Length = 248
Score = 67.4 bits (163), Expect = 6e-11 Identities = 42/148 (28%), Positives = 76/148 (51%), Gaps = 7/148 (4%) Frame = +2
Query: 203 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 382 M ++ P++IG+A + CGKST + R+ N ++N S I Sbjct: 1 MKNTLKLPLLIGVAGGTSCGKSTIVERIIE------------NLNANAKQSGRQIDIVHL 48
Query: 383 DYHSLDRTGRKQKGVTALDPRAN-------NFDLMYEQVKAIKEGKSIEKPIYNHVTGLL 541 HS R ++ + A + + N NFDL+ E ++ + +GK++E P Y+ +T + Sbjct: 49 SLHSFYRELSAEEKILAREGKFNFDHPDQINFDLLAETLQNMIDGKTVEIPKYDMITSSM 108
Query: 542 DPPETIQPPKIFVIEGLHPMFDARVREL 625 + T++P K+ +IEG+ ++D RVR+L Sbjct: 109 NGTVTVEPAKVIIIEGILLLYDERVRKL 136
>sp|Q9PQF9|URK_UREPA Uridine kinase OS=Ureaplasma parvum GN=udk PE=3 SV=1 Length = 207
Score = 59.7 bits (143), Expect = 1e-08 Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 3/141 (2%) Frame = +2
Query: 212 STDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYH 391 +T PI+I +A SG GK+TF + A PK + T+ VIC D Y+ Sbjct: 2 NTKSPILILIAGASGSGKTTFANEI------IARIPK----------NTTSVVICQDSYY 45
Query: 392 -SLDRTGRKQKGVTALD-PRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGL-LDPPETIQ 562 S + +K++ + D P + ++LM EQ+ IK+ K I+ PIY++ T + LD I Sbjct: 46 ISNSQLNKKERRLINYDHPSSFEWELMREQLSDIKKRKKIKVPIYDYKTEIRLDKTIDIS 105
Query: 563 PPKIFVIEGLHPMFDARVREL 625 + V+EG++ ++D + ++ Sbjct: 106 DVDVIVLEGIYAIYDDVINQI 126
>sp|B1AIX1|URK_UREP2 Uridine kinase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=udk PE=3 SV=1 Length = 207
Score = 59.7 bits (143), Expect = 1e-08 Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 3/141 (2%) Frame = +2
Query: 212 STDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYH 391 +T PI+I +A SG GK+TF + A PK + T+ VIC D Y+ Sbjct: 2 NTKSPILILIAGASGSGKTTFANEI------IARIPK----------NTTSVVICQDSYY 45
Query: 392 -SLDRTGRKQKGVTALD-PRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGL-LDPPETIQ 562 S + +K++ + D P + ++LM EQ+ IK+ K I+ PIY++ T + LD I Sbjct: 46 ISNSQLNKKERRLINYDHPSSFEWELMREQLSDIKKRKKIKVPIYDYKTEIRLDKTIDIS 105
Query: 563 PPKIFVIEGLHPMFDARVREL 625 + V+EG++ ++D + ++ Sbjct: 106 DVDVIVLEGIYAIYDDVINQI 126
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q8GRU9 |
Definition |
tr|Q8GRU9|Q8GRU9_ORYSI Phosphoribulokinase OS=Oryza sativa subsp. indica |
Align length |
141 |
Score (bit) |
267.0 |
E-value |
3.0e-70 |
Report |
|