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NBDC - LSDB Archive
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DK956188
Clone id TST39A01NGRL0025_B11
Library
Length 494
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_B11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTGATTGTACGCAGTATTCAGTATGGCCATCTCCATAGCCGCTTCCTCGGCAGTTGTCGC
TCCTAGCTGCGCCCCCGCAGAGAGCTTGTCAAAGAGCTTCTCTGGTCTCAAGGCCACTAC
CCTGTTCGCCCCCAAGAGCCCCAACCCGCTCGCCATCTCTAATGGCAGCCGTGTGAGCGC
CATGCTTGTGTGGAAGCCGTATGACAACAAGAAGTTCGAGACTCTGTCCTACTTGCCGCC
TTTGTCAAGTGAGCAGATTGCGAAGCAGGTGGACTTCATGGTCCGAAAAGGCTGGACCCC
TTGCATTGAGTTCGACAAAATCGGGAGCGTGTACCGAGAGCACTTCCACGGCAGCGGCTA
CTACGATGGGCGGTACTGGGTGATGTGGAAGCTGCCCATGTTTTGGCTGCCAAGATGCCG
CTTGCTGTGCTGCGTGAAATTGCAGAGTGCGCCAAGGAGTATCCTGAAGCCTTCATCCGC
GAGCTGGGCTTTGA
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 111
Score (bit) 127.0
E-value 6.0e-32
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956188|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_B11, 5'
         (477 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   127   6e-32
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   130   2e-31
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   123   2e-31
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   126   3e-31
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   131   8e-31
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   125   1e-30
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   122   1e-30
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   123   1e-30
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   121   2e-30
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   120   2e-30
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   121   4e-30
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   129   4e-30
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   125   4e-30
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   125   4e-30
sp|Q41373|RBS_SACHY Ribulose bisphosphate carboxylase small chai...   130   4e-30
sp|P07689|RBS3_PEA Ribulose bisphosphate carboxylase small chain...   128   5e-30
sp|P00869|RBS2_PEA Ribulose bisphosphate carboxylase small chain...   128   5e-30
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   129   5e-30
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   129   5e-30
sp|Q08186|RBS6_MESCR Ribulose bisphosphate carboxylase small cha...   124   6e-30
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   129   7e-30
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   120   8e-30
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   129   9e-30
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   120   1e-29
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   119   1e-29
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   124   1e-29
sp|Q08183|RBS3_MESCR Ribulose bisphosphate carboxylase small cha...   123   2e-29
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   120   2e-29
sp|Q04450|RBS2_MESCR Ribulose bisphosphate carboxylase small cha...   124   3e-29
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   119   3e-29

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  127 bits (318), Expect(2) = 6e-32
 Identities = 60/111 (54%), Positives = 76/111 (68%), Gaps = 5/111 (4%)
 Frame = +2

Query: 86  LSKSFSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 253
           L+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS E
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 254 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMF 403
            ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMF
Sbjct: 82  ALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMF 132



 Score = 30.4 bits (67), Expect(2) = 6e-32
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 427 VLREIAECAKEYPEAFI 477
           V++E+ EC KEYP AFI
Sbjct: 140 VMKEVGECKKEYPNAFI 156


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  130 bits (326), Expect(2) = 2e-31
 Identities = 60/103 (58%), Positives = 71/103 (68%)
 Frame = +2

Query: 95  SFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVD 274
           S +    T  FA  S  P   SNG RV  M VW P   KKFETLSYLPPL+ EQ+ ++VD
Sbjct: 31  SSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVD 87

Query: 275 FMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMF 403
           +++R GW PCIEF K+G VYRE+ +  GYYDGRYW MWKLPMF
Sbjct: 88  YLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMF 130



 Score = 25.8 bits (55), Expect(2) = 2e-31
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 427 VLREIAECAKEYPEAF 474
           VL+E+ EC+K YP+ F
Sbjct: 138 VLKEVDECSKAYPDYF 153


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  123 bits (309), Expect(2) = 2e-31
 Identities = 58/110 (52%), Positives = 79/110 (71%), Gaps = 4/110 (3%)
 Frame = +2

Query: 86  LSKSFSGLKATTLF-APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQ 256
           L+  F+GLK++  F   K  N +    SNGSRV+ M VW P   KKFETLSYLPPL+ EQ
Sbjct: 21  LATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQ 80

Query: 257 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMF 403
           + K+V++++RKGW PC+EF+ + G V+R++    GYYDGRYW MW+LP+F
Sbjct: 81  LLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLF 130



 Score = 32.3 bits (72), Expect(2) = 2e-31
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +1

Query: 427 VLREIAECAKEYPEAFI 477
           VL+E+AEC  EYPEAFI
Sbjct: 138 VLKEVAECKAEYPEAFI 154


>sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Medicago sativa PE=2 SV=1
          Length = 180

 Score =  126 bits (317), Expect(2) = 3e-31
 Identities = 59/107 (55%), Positives = 78/107 (72%), Gaps = 5/107 (4%)
 Frame = +2

Query: 98  FSGLKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 265
           F+GLK++  F    K+ N +    SNG RV+ M VW P   KKFETLSYLPPL+ EQ+AK
Sbjct: 26  FTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAK 85

Query: 266 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMF 403
           +V++++RKGW PC+EF+ + G VYRE+    GYYDGRYW MW+LP+F
Sbjct: 86  EVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLF 132



 Score = 28.5 bits (62), Expect(2) = 3e-31
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +1

Query: 427 VLREIAECAKEYPEAFI 477
           VL+E+A+C  EYP++FI
Sbjct: 140 VLKELADCKAEYPDSFI 156


>sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1
          Length = 170

 Score =  131 bits (329), Expect(2) = 8e-31
 Identities = 61/105 (58%), Positives = 74/105 (70%), Gaps = 3/105 (2%)
 Frame = +2

Query: 98  FSGLKATTLF--APKSPNPLA-ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 268
           F GLK+T     A +S   L  +SNG R+  M VW  Y NKKFETLSYLPPLS++ + KQ
Sbjct: 17  FQGLKSTASLPVARRSSRSLGNVSNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQ 76

Query: 269 VDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMF 403
           VD+++R GW PC+EF K+G VYRE+     YYDGRYW MWKLPMF
Sbjct: 77  VDYLLRNGWIPCLEFSKVGFVYRENSTSPCYYDGRYWTMWKLPMF 121



 Score = 22.3 bits (46), Expect(2) = 8e-31
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 427 VLREIAECAKEYPEAF 474
           V +E+ E  K YP+AF
Sbjct: 129 VYKELQEAIKSYPDAF 144


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  125 bits (313), Expect(2) = 1e-30
 Identities = 63/107 (58%), Positives = 76/107 (71%), Gaps = 5/107 (4%)
 Frame = +2

Query: 98  FSGLKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 265
           F+ LK+T+ F    K+ N +    SNG RV  M VW P   KKFETLSYLPPLSSEQ+AK
Sbjct: 28  FTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAK 87

Query: 266 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMF 403
           +VD+++RK   PC+EF+ + G VYREH    GYYDGRYW MWKLPMF
Sbjct: 88  EVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMF 134



 Score = 28.1 bits (61), Expect(2) = 1e-30
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 427 VLREIAECAKEYPEAFI 477
           VL+E+ EC K YP AFI
Sbjct: 142 VLKELEECKKAYPSAFI 158


>sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1
          Length = 178

 Score =  122 bits (306), Expect(2) = 1e-30
 Identities = 59/106 (55%), Positives = 73/106 (68%), Gaps = 4/106 (3%)
 Frame = +2

Query: 98  FSGLKATTLF-APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 268
           F+GLK+   F   K  N  +   SNG RV  M VW P   KK+ETLSYLPPL+  Q+AK+
Sbjct: 25  FTGLKSNAAFPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKE 84

Query: 269 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMF 403
           VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMF
Sbjct: 85  VDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMF 130



 Score = 30.4 bits (67), Expect(2) = 1e-30
 Identities = 11/17 (64%), Positives = 16/17 (94%)
 Frame = +1

Query: 427 VLREIAECAKEYPEAFI 477
           V++E+AEC KEYP+A+I
Sbjct: 138 VMKELAECKKEYPQAWI 154


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score =  123 bits (309), Expect(2) = 1e-30
 Identities = 59/111 (53%), Positives = 74/111 (66%), Gaps = 8/111 (7%)
 Frame = +2

Query: 95  SFSGLKATTLFAP--KSPNPLA------ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 250
           +F+GLK+T  F    K  N  A       SNG RV  M VW P+ N KFETLSYLP L+ 
Sbjct: 15  AFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTE 74

Query: 251 EQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMF 403
           EQ+ K+V++++R  W PC+EFD  GS+ R++    GYYDGRYWVMWKLPMF
Sbjct: 75  EQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMF 125



 Score = 29.3 bits (64), Expect(2) = 1e-30
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 427 VLREIAECAKEYPEAFI 477
           V+ E+ ECAK YP+AFI
Sbjct: 133 VINEVRECAKAYPKAFI 149


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  121 bits (304), Expect(2) = 2e-30
 Identities = 57/107 (53%), Positives = 75/107 (70%), Gaps = 5/107 (4%)
 Frame = +2

Query: 98  FSGLKATTLFAP--KSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 265
           F+GLK++  F    K+ N +    SNG RV+ M VW P   KKFETLSYLP L+  ++AK
Sbjct: 24  FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83

Query: 266 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMF 403
           +VD+++R  W PC+EF+ + G VYREH +  GYYDGRYW MWKLP+F
Sbjct: 84  EVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLF 130



 Score = 30.8 bits (68), Expect(2) = 2e-30
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 427 VLREIAECAKEYPEAFI 477
           VL+E+ EC KEYP AFI
Sbjct: 138 VLKEVEECKKEYPNAFI 154


>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain
           2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1
          Length = 180

 Score =  120 bits (301), Expect(2) = 2e-30
 Identities = 56/106 (52%), Positives = 72/106 (67%), Gaps = 4/106 (3%)
 Frame = +2

Query: 98  FSGLKATTLFAPKSPNP---LAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 268
           F+GLK+T  F     N       SNG RV  M VW   + K++ETLSYLPPL+++Q+A+Q
Sbjct: 27  FTGLKSTVGFPATKKNDDITSLASNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQ 86

Query: 269 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMF 403
           VD+++   W PC+EF+   G VYREH +  GYYDGRYW MWKLPMF
Sbjct: 87  VDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMF 132



 Score = 31.6 bits (70), Expect(2) = 2e-30
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +1

Query: 418 PLAVLREIAECAKEYPEAFI 477
           P  VL E+ EC KEYP AFI
Sbjct: 137 PAQVLNELEECKKEYPNAFI 156
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 106
Score (bit) 210.0
E-value 1.0e-57
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956188|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_B11, 5'
         (477 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   210   1e-57
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   143   8e-34
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   140   5e-33
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   140   7e-33
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   140   7e-33
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   140   7e-33
tr|A9U380|A9U380_PHYPA Ribulose bisphosphate carboxylase small c...   140   4e-32
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   137   4e-32
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   129   2e-31
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   130   3e-31
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   130   5e-31
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   127   5e-31
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   129   2e-30
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   129   3e-30
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c...   128   4e-30
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   125   5e-30
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...   128   6e-30
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   128   6e-30
tr|B7FHB2|B7FHB2_MEDTR Putative uncharacterized protein OS=Medic...   129   6e-30
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   128   6e-30
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   123   6e-30
tr|B4FSJ3|B4FSJ3_MAIZE Putative uncharacterized protein OS=Zea m...   131   8e-30
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c...   127   1e-29
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   123   1e-29
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   121   2e-29
tr|Q9FEE4|Q9FEE4_WHEAT Ribulose bisphosphate carboxylase small c...   127   2e-29
tr|O20253|O20253_SPIOL Ribulose bisphosphate carboxylase small c...   120   2e-29
tr|A9NL36|A9NL36_PICSI Ribulose bisphosphate carboxylase small c...   121   4e-29
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c...   121   4e-29
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c...   121   4e-29

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  210 bits (535), Expect(2) = 1e-57
 Identities = 95/106 (89%), Positives = 102/106 (96%)
 Frame = +2

Query: 86  LSKSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 265
           LSKSFSGLKA TLFAPK  NPLAISNGSR+SAMLVWKPYDNKKFETLSYLPPL+++QIAK
Sbjct: 22  LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 266 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMF 403
           QV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMF
Sbjct: 82  QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMF 127



 Score = 36.2 bits (82), Expect(2) = 1e-57
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 424 AVLREIAECAKEYPEAFI 477
           +VLREIAECAKEYP AFI
Sbjct: 134 SVLREIAECAKEYPTAFI 151


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  143 bits (361), Expect(2) = 8e-34
 Identities = 68/107 (63%), Positives = 79/107 (73%), Gaps = 3/107 (2%)
 Frame = +2

Query: 92  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 271
           K FSGLK+TTLFA K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 272 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMF 403
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMF
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMF 133



 Score = 23.5 bits (49), Expect(2) = 8e-34
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 427 VLREIAECAKEYPEAFI 477
           VLREI EC + +P  ++
Sbjct: 141 VLREIQECKQSFPSCWV 157


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  140 bits (352), Expect(2) = 5e-33
 Identities = 65/107 (60%), Positives = 78/107 (72%), Gaps = 3/107 (2%)
 Frame = +2

Query: 92  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 271
           K+FSGLK+ TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS +QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 272 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMF 403
           D+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMF
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMF 138



 Score = 24.3 bits (51), Expect(2) = 5e-33
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 427 VLREIAECAKEYPEAFI 477
           VLREI EC   YP  ++
Sbjct: 146 VLREIQECKTSYPSCWV 162


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  140 bits (352), Expect(2) = 7e-33
 Identities = 65/107 (60%), Positives = 79/107 (73%), Gaps = 3/107 (2%)
 Frame = +2

Query: 92  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 271
           K+FSGLK+ TLF+ K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 272 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMF 403
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMF
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMF 168



 Score = 23.9 bits (50), Expect(2) = 7e-33
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 427 VLREIAECAKEYPEAFI 477
           VLREI EC  ++P  ++
Sbjct: 176 VLREIQECKSQFPSCWV 192


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  140 bits (352), Expect(2) = 7e-33
 Identities = 66/107 (61%), Positives = 78/107 (72%), Gaps = 3/107 (2%)
 Frame = +2

Query: 92  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 271
           K+FSGLK  TLF+ K+    A+ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 272 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMF 403
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMF
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMF 138



 Score = 23.9 bits (50), Expect(2) = 7e-33
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 427 VLREIAECAKEYPEAFI 477
           VLREI EC  ++P  ++
Sbjct: 146 VLREIQECKSQFPSCWV 162


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  140 bits (353), Expect(2) = 7e-33
 Identities = 67/107 (62%), Positives = 78/107 (72%), Gaps = 3/107 (2%)
 Frame = +2

Query: 92  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 271
           K FSGLK+TTL A K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 272 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMF 403
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMF
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMF 133



 Score = 23.5 bits (49), Expect(2) = 7e-33
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 427 VLREIAECAKEYPEAFI 477
           VLREI EC + +P  ++
Sbjct: 141 VLREIQECKQSFPSCWV 157


>tr|A9U380|A9U380_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_8310 PE=3 SV=1
          Length = 156

 Score =  140 bits (352), Expect = 4e-32
 Identities = 65/107 (60%), Positives = 78/107 (72%), Gaps = 3/107 (2%)
 Frame = +2

Query: 92  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 271
           K+FSGLK+ TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS +QIA+QV
Sbjct: 36  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 95

Query: 272 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMF 403
           D+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMF
Sbjct: 96  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMF 142


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  137 bits (346), Expect(2) = 4e-32
 Identities = 63/107 (58%), Positives = 79/107 (73%), Gaps = 3/107 (2%)
 Frame = +2

Query: 92  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 271
           K+FSGLK+ TLF+ ++    ++ NGSRV  M VW P    KFET SYLPPL+ ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 272 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMF 403
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMF
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMF 137



 Score = 23.5 bits (49), Expect(2) = 4e-32
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 427 VLREIAECAKEYPEAFI 477
           VLREI EC  ++P  ++
Sbjct: 145 VLREIQECKTQFPSCWV 161


>tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small
           chain OS=Panax ginseng PE=2 SV=1
          Length = 183

 Score =  129 bits (324), Expect(2) = 2e-31
 Identities = 61/106 (57%), Positives = 75/106 (70%), Gaps = 4/106 (3%)
 Frame = +2

Query: 98  FSGLKATTLF-APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 268
           F+GLK+T  F   +  N +    SNG RV  M VW P   KKFETLSYLP L+ EQ++K+
Sbjct: 28  FTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMKVWPPLGLKKFETLSYLPQLTQEQLSKE 87

Query: 269 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMF 403
           VD+++R GW PC+EF+ + G VYREH H  GYYDGRYW MWKLPMF
Sbjct: 88  VDYLLRSGWVPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMF 133



 Score = 29.6 bits (65), Expect(2) = 2e-31
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 427 VLREIAECAKEYPEAFI 477
           VL+E+ EC KEYP A+I
Sbjct: 141 VLKEVEECKKEYPNAYI 157


>tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small
           chain OS=Populus trichocarpa PE=2 SV=1
          Length = 170

 Score =  130 bits (328), Expect(2) = 3e-31
 Identities = 53/83 (63%), Positives = 66/83 (79%)
 Frame = +2

Query: 155 ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVY 334
           +SNGS+   M  W P +NKKFE LSYLPPLS + IAK++D+M++KGW PC+EFD++GSV 
Sbjct: 41  VSNGSKTFCMKTWNPINNKKFEALSYLPPLSEDSIAKEIDYMMKKGWIPCLEFDEVGSVR 100

Query: 335 REHFHGSGYYDGRYWVMWKLPMF 403
           REH    GYYDGRYW +WKLPMF
Sbjct: 101 REHSRMPGYYDGRYWTLWKLPMF 123



 Score = 27.3 bits (59), Expect(2) = 3e-31
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 427 VLREIAECAKEYPEAFI 477
           VL EI EC K YP+A+I
Sbjct: 131 VLEEIHECKKAYPDAYI 147