DK956190 |
Clone id |
TST39A01NGRL0025_B13 |
Library |
TST39 |
Length |
580 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_B13. 5' end sequence. |
Accession |
DK956190 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1237Contig1 |
Sequence |
CTGCAAGTATGGTCGTTGCACTTAAGAAGATTCCCGTGAAGGGCGATCGATGCTTGGCTC AACTGGTTCTTGCAGGCGACGATGAGCACAGGCTAAACCCAGATAGTATAGCTGAAATTG ACAAGGCCTTGGATCAGGTGGAGAATGACACAAGCATTTCTGCTCTTGTTACAACTAATG AGGGAAAGTTTTATTCTAATGGGCTAGACTTCGAGTTTCTTCGTGCAAATCCAGACAAAG CTACGCTCTTAATTGTTGTCTTTCAGAAACTCCTTCATCGAATTCTGTGCTTCCCTATCC CTACAATTGCTGCTGTTTGTGGGCATGCAGTTGCTGGAGGCTGTATGATGGCACTTGCTC ATGATTTCCGGTACATGCGAAGCGACAGAGGGTTTATAATGTTGAATGAGGTAGAAATCA AGCTTCCTTTAACTCCTGGTATGAATGCAATCATCAAGAGCAAGCTCCCAGTGCCAACCT ACCATGAAGCAGTGCTAACGGCTCATCGGTATGTAGGGAAGACTGCAGCCGTTGCAGGAA TAATACATGGGGGCGTGCTCTGATGTAGACTCCACCCGGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P94549 |
Definition |
sp|P94549|FADB_BACSU Probable enoyl-CoA hydratase OS=Bacillus subtilis |
Align length |
143 |
Score (bit) |
52.0 |
E-value |
2.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956190|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0025_B13, 5' (580 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P94549|FADB_BACSU Probable enoyl-CoA hydratase OS=Bacillus su... 52 2e-06 sp|A8FP63|FADB_SHESH Fatty acid oxidation complex subunit alpha ... 41 0.005 sp|P52046|CRT_CLOAB 3-hydroxybutyryl-CoA dehydratase OS=Clostrid... 41 0.005 sp|A9KU91|FADB_SHEB9 Fatty acid oxidation complex subunit alpha ... 39 0.019 sp|A6WHA0|FADB_SHEB8 Fatty acid oxidation complex subunit alpha ... 39 0.019 sp|Q869N6|CRTL_DICDI 3-hydroxybutyryl-CoA dehydratase-like prote... 39 0.019 sp|A3CYJ4|FADB_SHEB5 Fatty acid oxidation complex subunit alpha ... 37 0.055 sp|A1RDW6|FADB_SHESW Fatty acid oxidation complex subunit alpha ... 37 0.071 sp|A4Y1B6|FADB_SHEPC Fatty acid oxidation complex subunit alpha ... 37 0.071 sp|Q66FR8|FADB_YERPS Fatty acid oxidation complex subunit alpha ... 36 0.12 sp|A4TR27|FADB_YERPP Fatty acid oxidation complex subunit alpha ... 36 0.12 sp|Q1CN99|FADB_YERPN Fatty acid oxidation complex subunit alpha ... 36 0.12 sp|Q8ZAN0|FADB_YERPE Fatty acid oxidation complex subunit alpha ... 36 0.12 sp|Q1C2C4|FADB_YERPA Fatty acid oxidation complex subunit alpha ... 36 0.12 sp|A7FDF2|FADB_YERP3 Fatty acid oxidation complex subunit alpha ... 36 0.12 sp|Q6DAP5|FADB_ERWCT Fatty acid oxidation complex subunit alpha ... 36 0.12 sp|Q0I0T3|FADB_SHESR Fatty acid oxidation complex subunit alpha ... 36 0.16 sp|Q0HPB7|FADB_SHESM Fatty acid oxidation complex subunit alpha ... 36 0.16 sp|Q8EKR9|FADB_SHEON Fatty acid oxidation complex subunit alpha ... 36 0.16 sp|A0KR50|FADB_SHESA Fatty acid oxidation complex subunit alpha ... 35 0.21 sp|B0TLB9|FADB_SHEHH Fatty acid oxidation complex subunit alpha ... 35 0.35 sp|Q3TLP5|ECHD2_MOUSE Enoyl-CoA hydratase domain-containing prot... 34 0.46 sp|Q2TBT3|ECHD2_BOVIN Enoyl-CoA hydratase domain-containing prot... 34 0.46 sp|Q9KNI1|FADB_VIBCH Fatty acid oxidation complex subunit alpha ... 34 0.60 sp|A5F465|FADB_VIBC3 Fatty acid oxidation complex subunit alpha ... 34 0.60 sp|Q86YB7|ECHD2_HUMAN Enoyl-CoA hydratase domain-containing prot... 33 0.79 sp|Q55791|Y075_SYNY3 Probable ATP-dependent transporter slr0075 ... 33 1.3 sp|Q5E3U1|FADJ_VIBF1 Fatty acid oxidation complex subunit alpha ... 33 1.3 sp|Q7MQH9|FADB_VIBVY Fatty acid oxidation complex subunit alpha ... 32 3.0 sp|Q8DDK6|FADB_VIBVU Fatty acid oxidation complex subunit alpha ... 32 3.0
>sp|P94549|FADB_BACSU Probable enoyl-CoA hydratase OS=Bacillus subtilis GN=fadB PE=2 SV=1 Length = 258
Score = 52.0 bits (123), Expect = 2e-06 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 3/143 (2%) Frame = +3
Query: 21 LKKIPVKGDRCLAQLVLAGDDEHRLNPDSIAEIDKALDQVENDTSISALVTTNEGKFYSN 200 + I + D+ +A L + + L+ + E+ LDQ E D + +++ EG+F+S Sbjct: 1 MNAISLAVDQFVAVLTIHNPPANALSSRILEELSSCLDQCETDAGVRSIIIHGEGRFFSA 60
Query: 201 GLD---FEFLRANPDKATLLIVVFQKLLHRILCFPIPTIXXXXXXXXXXXXMMALAHDFR 371 G D F L+ N D ++LL Q+L+ RI FP P I +A+A R Sbjct: 61 GADIKEFTSLKGNED-SSLLAERGQQLMERIESFPKPIIAAIHGAALGGGLELAMACHIR 119
Query: 372 YMRSDRGFIMLNEVEIKLPLTPG 440 D L E+ L + PG Sbjct: 120 IAAED---AKLGLPELNLGIIPG 139
>sp|A8FP63|FADB_SHESH Fatty acid oxidation complex subunit alpha OS=Shewanella sediminis (strain HAW-EB3) GN=fadB PE=3 SV=1 Length = 716
Score = 40.8 bits (94), Expect = 0.005 Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 8/137 (5%) Frame = +3
Query: 72 AGDDEHRLNPDSIAEIDKALDQVENDTSISALVTTNEGKFYSNGLDF-EFLRANPDKATL 248 A ++L+ ++I +D ALD ++ D+ I ALV T+ + G D EFL + ++ Sbjct: 24 ASGSVNKLDRETINSLDAALDAIQQDSHIQALVLTSAKGAFIVGADITEFLGLFAQEDSV 83
Query: 249 LI-------VVFQKLLHRILCFPIPTIXXXXXXXXXXXXMMALAHDFRYMRSDRGFIMLN 407 L+ VVF KL P PTI LA DFR + + Sbjct: 84 LLPWIAEANVVFNKLED----LPFPTISAINGFALGGGFETVLATDFRIADTT---AKIG 136
Query: 408 EVEIKLPLTPGMNAIIK 458 E KL L PG ++ Sbjct: 137 LPETKLGLIPGFGGTVR 153
>sp|P52046|CRT_CLOAB 3-hydroxybutyryl-CoA dehydratase OS=Clostridium acetobutylicum GN=crt PE=3 SV=1 Length = 261
Score = 40.8 bits (94), Expect = 0.005 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 2/118 (1%) Frame = +3
Query: 93 LNPDSIAEIDKALDQVENDTSISALVTTNEG-KFYSNGLDF-EFLRANPDKATLLIVVFQ 266 LN D++ E+D + ++END+ + A++ T G K + G D E N + ++ Sbjct: 28 LNSDTLKEMDYVIGEIENDSEVLAVILTGAGEKSFVAGADISEMKEMNTIEGRKFGILGN 87
Query: 267 KLLHRILCFPIPTIXXXXXXXXXXXXMMALAHDFRYMRSDRGFIMLNEVEIKLPLTPG 440 K+ R+ P I +A++ D R S+ F + E+ L +TPG Sbjct: 88 KVFRRLELLEKPVIAAVNGFALGGGCEIAMSCDIRIASSNARF---GQPEVGLGITPG 142
>sp|A9KU91|FADB_SHEB9 Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS195) GN=fadB PE=3 SV=1 Length = 716
Score = 38.9 bits (89), Expect = 0.019 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 4/128 (3%) Frame = +3
Query: 87 HRLNPDSIAEIDKALDQVENDTSISALVTTNEGKFYSNGLDF-EFLRA-NPDKATLLIVV 260 ++ + +++A +D ALD ++ D++I ALV T+ + G D EFL D A LL V Sbjct: 29 NKFDRETLASLDAALDSIKQDSNIKALVLTSSKDTFIVGADITEFLGLFAQDDAVLLSWV 88
Query: 261 FQ--KLLHRILCFPIPTIXXXXXXXXXXXXMMALAHDFRYMRSDRGFIMLNEVEIKLPLT 434 Q + +++ P PT LA DFR + + E KL + Sbjct: 89 EQANAVFNKLEDLPFPTASAIKGFALGGGCETILATDFRVADTT---AKIGLPETKLGII 145
Query: 435 PGMNAIIK 458 PG ++ Sbjct: 146 PGFGGTVR 153
>sp|A6WHA0|FADB_SHEB8 Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS185) GN=fadB PE=3 SV=1 Length = 716
Score = 38.9 bits (89), Expect = 0.019 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 4/128 (3%) Frame = +3
Query: 87 HRLNPDSIAEIDKALDQVENDTSISALVTTNEGKFYSNGLDF-EFLRA-NPDKATLLIVV 260 ++ + +++A +D ALD ++ D++I ALV T+ + G D EFL D A LL V Sbjct: 29 NKFDRETLASLDAALDSIKQDSNIKALVLTSSKDTFIVGADITEFLGLFAQDDAVLLSWV 88
Query: 261 FQ--KLLHRILCFPIPTIXXXXXXXXXXXXMMALAHDFRYMRSDRGFIMLNEVEIKLPLT 434 Q + +++ P PT LA DFR + + E KL + Sbjct: 89 EQANAVFNKLEDLPFPTASAIKGFALGGGCETILATDFRIADTT---AKIGLPETKLGII 145
Query: 435 PGMNAIIK 458 PG ++ Sbjct: 146 PGFGGTVR 153
>sp|Q869N6|CRTL_DICDI 3-hydroxybutyryl-CoA dehydratase-like protein, mitochondrial OS=Dictyostelium discoideum GN=DDB_G0271866 PE=3 SV=1 Length = 299
Score = 38.9 bits (89), Expect = 0.019 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%) Frame = +3
Query: 123 KALDQVENDTSISALVTTNEGKFYSNGLDFEFL----RANPDKATLLIVVFQKLLHRILC 290 K +D + D + +V T EGK +S G D +FL + P+ ++ F + I Sbjct: 69 KVVDTLAEDKDLKCVVLTGEGKAFSAGGDLDFLIERTKDTPENNQRIMERFYRTFLYIRS 128
Query: 291 FPIPTIXXXXXXXXXXXXMMALAHDFRYMRSDRGFIMLNEVEIKLPLTPGM 443 P+P I +ALA D R + S++ + L KL + PGM Sbjct: 129 LPVPIISAINGAAIGAGFCLALATDIRVV-SNKAPVGLTFT--KLGIHPGM 176
>sp|A3CYJ4|FADB_SHEB5 Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadB PE=3 SV=1 Length = 716
Score = 37.4 bits (85), Expect = 0.055 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 4/128 (3%) Frame = +3
Query: 87 HRLNPDSIAEIDKALDQVENDTSISALVTTNEGKFYSNGLDF-EFLRA-NPDKATLLIVV 260 ++ + +++ +D ALD ++ D++I ALV T+ + G D EFL D A LL V Sbjct: 29 NKFDRETLTSLDAALDSIKQDSNIKALVLTSSKDTFIVGADITEFLGLFAQDDAVLLSWV 88
Query: 261 FQ--KLLHRILCFPIPTIXXXXXXXXXXXXMMALAHDFRYMRSDRGFIMLNEVEIKLPLT 434 Q + +++ P PT LA DFR + + E KL + Sbjct: 89 EQANAVFNKLEDLPFPTASAIKGFALGGGCETILATDFRIADTT---AKIGLPETKLGII 145
Query: 435 PGMNAIIK 458 PG ++ Sbjct: 146 PGFGGTVR 153
>sp|A1RDW6|FADB_SHESW Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain W3-18-1) GN=fadB PE=3 SV=1 Length = 716
Score = 37.0 bits (84), Expect = 0.071 Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 4/128 (3%) Frame = +3
Query: 87 HRLNPDSIAEIDKALDQVENDTSISALVTTNEGKFYSNGLDF-EFLRA-NPDKATLLIVV 260 ++ + +++A +D ALD ++ +++I ALV T+ + G D EFL D A LL V Sbjct: 29 NKFDRETLASLDAALDSIKQNSNIKALVLTSSKDTFIVGADITEFLGLFAQDDAVLLSWV 88
Query: 261 FQ--KLLHRILCFPIPTIXXXXXXXXXXXXMMALAHDFRYMRSDRGFIMLNEVEIKLPLT 434 Q + +++ P PT LA DFR + + E KL + Sbjct: 89 EQANAVFNKLEDLPFPTASAIKGFALGGGCETILATDFRIADTT---AKIGLPETKLGII 145
Query: 435 PGMNAIIK 458 PG ++ Sbjct: 146 PGFGGTVR 153
>sp|A4Y1B6|FADB_SHEPC Fatty acid oxidation complex subunit alpha OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadB PE=3 SV=1 Length = 716
Score = 37.0 bits (84), Expect = 0.071 Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 4/128 (3%) Frame = +3
Query: 87 HRLNPDSIAEIDKALDQVENDTSISALVTTNEGKFYSNGLDF-EFLRA-NPDKATLLIVV 260 ++ + +++A +D ALD ++ +++I ALV T+ + G D EFL D A LL V Sbjct: 29 NKFDRETLASLDAALDSIKQNSNIKALVLTSSKDTFIVGADITEFLGLFAQDDAVLLSWV 88
Query: 261 FQ--KLLHRILCFPIPTIXXXXXXXXXXXXMMALAHDFRYMRSDRGFIMLNEVEIKLPLT 434 Q + +++ P PT LA DFR + + E KL + Sbjct: 89 EQANAVFNKLEDLPFPTASAIKGFALGGGCETILATDFRIADTT---AKIGLPETKLGII 145
Query: 435 PGMNAIIK 458 PG ++ Sbjct: 146 PGFGGTVR 153
>sp|Q66FR8|FADB_YERPS Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis GN=fadB PE=3 SV=1 Length = 729
Score = 36.2 bits (82), Expect = 0.12 Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 5/140 (3%) Frame = +3
Query: 54 LAQLVL-AGDDEHRLNPDSIAEIDKALDQVENDTSISALVTTNEGKFYSNGLDF-EFL-- 221 +A+LV A ++L+ ++A + +AL+ +E + + L+ + G D EFL Sbjct: 17 IAELVFDAPGSVNKLDTKTVANLGEALNVLEKQSELKGLLLRSAKTALIVGADITEFLSL 76
Query: 222 -RANPDKATLLIVVFQKLLHRILCFPIPTIXXXXXXXXXXXXMMALAHDFRYMRSDRGFI 398 A P+K +V + +R+ P+PTI LA DFR + Sbjct: 77 FNAPPEKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPE---A 133
Query: 399 MLNEVEIKLPLTPGMNAIIK 458 + E KL + PG ++ Sbjct: 134 RIGLPETKLGIMPGFGGSVR 153
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RRB0 |
Definition |
tr|A9RRB0|A9RRB0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
162 |
Score (bit) |
172.0 |
E-value |
2.0e-41 |
Report |
|