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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956207
Clone id TST39A01NGRL0025_C06
Library
Length 619
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_C06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AAGGAAACGGCCCAGAGAAGACAACTCTGCTGGAAAAGCTGGCAGAAGACAGAAAGGGCC
GCTTGCCATCGGCTTGGAGCAAAATGCTACGCCAGGGAAGAGATCAAGTAGTGTGTCACA
GTCTTCTACCGAGTCGGATTCTGCGGACTCTTCCACAAGTGAAAGCGATGGATAAACGCT
TTCTAGGTTGAGGCAGCAACCGCCAGTCTCAATGTCCTTAGCATGAGCAACGGCCCCTAC
TTATGACCACACTTCCTTAATAGAGGGGTAGCTGCAAGAAGTAGAAGATGTCTTGAGCTA
TCCACCACTAAAATTACACCCGATATCTCAAACAAACCTGCTCTGCACAGCAAATGTCGG
CAGTCTAGAATTTTTGACAGAAGACTTACCCTCCAACAAGGTTAAAGCTGATCATTATAA
GTGTCACTCTTGATCCATATTTTCTTTATAAAAATGTTCGTCCCCATTGGGGATTCATGC
TAGTGTCCATACCTTAGGACTGTTTGTACTTTTACCTCAACACAACTCTTGCCTGGACTT
CACTGTACACTAAAGGTGGATCACCGTTTGCTTTGTAGAATACTTCTTTTGAAACCTTCT
TTAAGGGTAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6TAQ6
Definition sp|Q6TAQ6|HOX10_ORYSJ Homeobox-leucine zipper protein HOX10 OS=Oryza sativa subsp. japonica
Align length 69
Score (bit) 30.8
E-value 5.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956207|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_C06, 5'
         (608 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6TAQ6|HOX10_ORYSJ Homeobox-leucine zipper protein HOX10 OS=O...    31   5.6  
sp|A2XBL9|HOX10_ORYSI Homeobox-leucine zipper protein HOX10 OS=O...    31   5.6  
sp|Q9HCK8|CHD8_HUMAN Chromodomain-helicase-DNA-binding protein 8...    30   7.4  
sp|Q9AV49|HOX9_ORYSJ Homeobox-leucine zipper protein HOX9 OS=Ory...    30   9.6  
sp|A2Z8L4|HOX9_ORYSI Homeobox-leucine zipper protein HOX9 OS=Ory...    30   9.6  

>sp|Q6TAQ6|HOX10_ORYSJ Homeobox-leucine zipper protein HOX10
           OS=Oryza sativa subsp. japonica GN=HOX10 PE=2 SV=1
          Length = 839

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 17/69 (24%), Positives = 34/69 (49%)
 Frame = +1

Query: 169 WINAF*VEAATASLNVLSMSNGPYL*PHFLNRGVAARSRRCLELSTTKITPDISNKPALH 348
           W+    ++    S+ ++++S+G         RGVAAR+   + L  TK+   + ++P+  
Sbjct: 184 WVQMPGMKPGPDSVGIVAISHGC--------RGVAARACGLVNLEPTKVVEILKDRPSWF 235

Query: 349 SKCRQSRIF 375
             CR   +F
Sbjct: 236 RDCRNLEVF 244


>sp|A2XBL9|HOX10_ORYSI Homeobox-leucine zipper protein HOX10
           OS=Oryza sativa subsp. indica GN=HOX10 PE=2 SV=2
          Length = 839

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 17/69 (24%), Positives = 34/69 (49%)
 Frame = +1

Query: 169 WINAF*VEAATASLNVLSMSNGPYL*PHFLNRGVAARSRRCLELSTTKITPDISNKPALH 348
           W+    ++    S+ ++++S+G         RGVAAR+   + L  TK+   + ++P+  
Sbjct: 184 WVQMPGMKPGPDSVGIVAISHGC--------RGVAARACGLVNLEPTKVVEILKDRPSWF 235

Query: 349 SKCRQSRIF 375
             CR   +F
Sbjct: 236 RDCRNLEVF 244


>sp|Q9HCK8|CHD8_HUMAN Chromodomain-helicase-DNA-binding protein 8
            OS=Homo sapiens GN=CHD8 PE=1 SV=3
          Length = 2302

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 12   PEKTTLLEKLAEDRKGRLPSAWSKMLRQGRDQVVCHSLLPSRILRTLP 155
            P+    +E + E+R  R      ++LR+ R+QV+CH LL  R+    P
Sbjct: 1590 PDPNLFIEPITEERASRTLYR-IELLRRLREQVLCHPLLEDRLALCQP 1636


>sp|Q9AV49|HOX9_ORYSJ Homeobox-leucine zipper protein HOX9 OS=Oryza
           sativa subsp. japonica GN=HOX9 PE=2 SV=1
          Length = 840

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 262 RGVAARSRRCLELSTTKITPDISNKPALHSKCRQSRIF 375
           RGVAAR+   + L  TKI   + ++P+    CR   +F
Sbjct: 209 RGVAARACGLVNLEPTKIVEILKDRPSWFRDCRSLEVF 246


>sp|A2Z8L4|HOX9_ORYSI Homeobox-leucine zipper protein HOX9 OS=Oryza
           sativa subsp. indica GN=HOX9 PE=2 SV=2
          Length = 840

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 262 RGVAARSRRCLELSTTKITPDISNKPALHSKCRQSRIF 375
           RGVAAR+   + L  TKI   + ++P+    CR   +F
Sbjct: 209 RGVAARACGLVNLEPTKIVEILKDRPSWFRDCRSLEVF 246
tr_hit_id Q9U3L8
Definition tr|Q9U3L8|Q9U3L8_CAEEL Protein C47A4.2b, partially confirmed by transcript evidence OS=Caenorhabditis elegans
Align length 57
Score (bit) 37.4
E-value 0.68
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956207|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_C06, 5'
         (608 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9U3L8|Q9U3L8_CAEEL Protein C47A4.2b, partially confirmed by ...    37   0.68 
tr|Q7JKL2|Q7JKL2_CAEEL Protein C47A4.2a, partially confirmed by ...    37   0.68 
tr|Q2EEN3|Q2EEN3_CAEEL Protein C47A4.2c, partially confirmed by ...    37   0.68 
tr|A8NQP8|A8NQP8_COPC7 Putative uncharacterized protein OS=Copri...    33   9.8  

>tr|Q9U3L8|Q9U3L8_CAEEL Protein C47A4.2b, partially confirmed by
           transcript evidence OS=Caenorhabditis elegans GN=C47A4.2
           PE=4 SV=2
          Length = 451

 Score = 37.4 bits (85), Expect = 0.68
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = +3

Query: 384 TYPPTRLKLI--IISVTLDPYFLYKNVRPHWGFMLVSIP*DCLYFYLNTTLAWTSLY 548
           T+P  RL ++  +I +   P+F++ N  PH   M V    + ++F+ NT LA+TS Y
Sbjct: 345 TFPGPRLLIVPCVIRLLFIPFFMFSNYLPHSRTMGVLFTNEWIFFFGNTLLAFTSGY 401


>tr|Q7JKL2|Q7JKL2_CAEEL Protein C47A4.2a, partially confirmed by
           transcript evidence OS=Caenorhabditis elegans GN=C47A4.2
           PE=4 SV=1
          Length = 445

 Score = 37.4 bits (85), Expect = 0.68
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = +3

Query: 384 TYPPTRLKLI--IISVTLDPYFLYKNVRPHWGFMLVSIP*DCLYFYLNTTLAWTSLY 548
           T+P  RL ++  +I +   P+F++ N  PH   M V    + ++F+ NT LA+TS Y
Sbjct: 339 TFPGPRLLIVPCVIRLLFIPFFMFSNYLPHSRTMGVLFTNEWIFFFGNTLLAFTSGY 395


>tr|Q2EEN3|Q2EEN3_CAEEL Protein C47A4.2c, partially confirmed by
           transcript evidence OS=Caenorhabditis elegans GN=C47A4.2
           PE=4 SV=1
          Length = 383

 Score = 37.4 bits (85), Expect = 0.68
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = +3

Query: 384 TYPPTRLKLI--IISVTLDPYFLYKNVRPHWGFMLVSIP*DCLYFYLNTTLAWTSLY 548
           T+P  RL ++  +I +   P+F++ N  PH   M V    + ++F+ NT LA+TS Y
Sbjct: 277 TFPGPRLLIVPCVIRLLFIPFFMFSNYLPHSRTMGVLFTNEWIFFFGNTLLAFTSGY 333


>tr|A8NQP8|A8NQP8_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_03430 PE=4 SV=1
          Length = 324

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 1   KETAQRRQLCWKSWQKTERAACHRLGAKCYAREEIK*CVTVFYRVGFCGL 150
           KE A+RR+  WK+W + +R  C     K + R+     V VF+  G C +
Sbjct: 108 KEKAERRREFWKAWNRDQRGLC----GKYFTRK-----VFVFFMFGLCAV 148