DK956213 |
Clone id |
TST39A01NGRL0025_C12 |
Library |
TST39 |
Length |
636 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_C12. 5' end sequence. |
Accession |
DK956213 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1239Contig1 |
Sequence |
CTTCGCTTGCCATCGCTGCTCTACGAGCTCTCTGTGCGTCTTCGGGTCGCGCCTTTCCTC CTCGTCCCTTGCTTCTGTGTCCACCAGCTTTCATCCCGGTCCTCTTCGTCAACGCCGCAG CTCCCCTGCCCAACGCGGTAGGTTTTCCCGTGTGATTAGCATGGCCTCCATTGCCGTTGA ACCCGTTGAAGTTCTCGTCAAGGCTGCGACGGGAGAGCCCGAGAAGCTCGGAGACTGTCC ATTTTGTCATAGAGTTCTTTTGACTTTGGAGGAGAAGGGTGTTCCTTATGACTTGAAACT TGTTGATCTGGCCAATAAGCCTGACTGGTTTGTGGAAATTAACCCGGAAGGAAAGGTACC TGTTGTAAAACATGAAGGGAAATGGGTGCCTGATTCAGATGTAATTACCCAAATCATTGA GGAAAGATATCCAGAGCCCCCCCTCCAAACACCTGCAGACAAGGTTTCAGTGGGCTCAAA AGTGTTTTCTAGCTTTGTCAAGTTCCTGAAGAGCAAGGATTCTTCTGATGGGTCTGAAGA AGCTTTGGTGGCTGAATTGACAGCTTTGAATGTCTATTTGAAAGAGAATGGACCATTTAT TGCTGGCGATAAGATTACTGCAGCGGATCTAAGTTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9FWR4 |
Definition |
sp|Q9FWR4|DHAR1_ARATH Glutathione S-transferase DHAR1, mitochondrial OS=Arabidopsis thaliana |
Align length |
145 |
Score (bit) |
147.0 |
E-value |
3.0e-35 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956213|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0025_C12, 5' (618 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9FWR4|DHAR1_ARATH Glutathione S-transferase DHAR1, mitochond... 147 3e-35 sp|P81124|GSTO_APLCA Probable glutathione transferase (Fragment)... 70 9e-12 sp|Q9Z339|GSTO1_RAT Glutathione S-transferase omega-1 OS=Rattus ... 64 5e-10 sp|O09131|GSTO1_MOUSE Glutathione S-transferase omega-1 OS=Mus m... 64 5e-10 sp|Q9N1F5|GSTO1_PIG Glutathione S-transferase omega-1 OS=Sus scr... 61 4e-09 sp|P78417|GSTO1_HUMAN Glutathione S-transferase omega-1 OS=Homo ... 59 3e-08 sp|P45207|SSPA_HAEIN Stringent starvation protein A homolog OS=H... 57 6e-08 sp|P31784|SSPA_HAESO Stringent starvation protein A homolog OS=H... 55 3e-07 sp|P30347|LIGF_PSEPA Protein ligF OS=Pseudomonas paucimobilis GN... 55 4e-07 sp|P46421|GSTXA_ARATH Glutathione S-transferase 103-1A OS=Arabid... 54 5e-07 sp|Q9CNB0|SSPA_PASMU Stringent starvation protein A homolog OS=P... 54 6e-07 sp|P34277|GSTO2_CAEEL Probable glutathione transferase omega-2 O... 53 1e-06 sp|Q7VLK4|SSPA_HAEDU Stringent starvation protein A homolog OS=H... 53 1e-06 sp|P0ACA6|SSPA_SHIFL Stringent starvation protein A OS=Shigella ... 52 2e-06 sp|P0ACA3|SSPA_ECOLI Stringent starvation protein A OS=Escherich... 52 2e-06 sp|P0ACA4|SSPA_ECOL6 Stringent starvation protein A OS=Escherich... 52 2e-06 sp|P0ACA5|SSPA_ECO57 Stringent starvation protein A OS=Escherich... 52 2e-06 sp|Q8K2Q2|GSTO2_MOUSE Glutathione S-transferase omega-2 OS=Mus m... 51 4e-06 sp|P32111|GSTX1_SOLTU Probable glutathione S-transferase OS=Sola... 51 5e-06 sp|A2XMN2|GSTU1_ORYSI Probable glutathione S-transferase GSTU1 O... 51 5e-06 sp|Q5M883|CLIC2_RAT Chloride intracellular channel protein 2 OS=... 51 5e-06 sp|O15247|CLIC2_HUMAN Chloride intracellular channel protein 2 O... 51 5e-06 sp|Q10CE7|GSTU1_ORYSJ Probable glutathione S-transferase GSTU1 O... 50 7e-06 sp|O95833|CLIC3_HUMAN Chloride intracellular channel protein 3 O... 50 7e-06 sp|Q6AXV9|GSTO2_RAT Glutathione S-transferase omega-2 OS=Rattus ... 50 1e-05 sp|P34345|GSTO1_CAEEL Glutathione transferase omega-1 OS=Caenorh... 50 1e-05 sp|Q83AY0|SSPA_COXBU Stringent starvation protein A homolog OS=C... 49 2e-05 sp|Q9D7P7|CLIC3_MOUSE Chloride intracellular channel protein 3 O... 49 2e-05 sp|Q06398|GSTU6_ORYSJ Probable glutathione S-transferase GSTU6 O... 49 3e-05 sp|Q811Q2|CLIC6_RAT Chloride intracellular channel protein 6 OS=... 49 3e-05
>sp|Q9FWR4|DHAR1_ARATH Glutathione S-transferase DHAR1, mitochondrial OS=Arabidopsis thaliana GN=DHAR1 PE=1 SV=1 Length = 213
Score = 147 bits (372), Expect = 3e-35 Identities = 72/145 (49%), Positives = 97/145 (66%), Gaps = 1/145 (0%) Frame = +2
Query: 185 VEVLVKAATGEPEKLGDCPFCHRVLLTLEEKGVPYDLKLVDLANKPDWFVEINPEGKVPV 364 +E+ VKAA G P+ LGDCPF R LLTLEEK + Y + L++L++KP WF++I+P+GKVPV Sbjct: 3 LEICVKAAVGAPDHLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPV 62
Query: 365 VKHEGKWVPDSDVITQIIEERYPEPPLQTPAXXXXXXXXXXXXXXXXXXXXXXXXGSEEA 544 +K + KWV DSDVI I+EE+YP+PPL+TPA GSE A Sbjct: 63 LKIDDKWVTDSDVIVGILEEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHA 122
Query: 545 LVAELTALNVYLK-ENGPFIAGDKI 616 L+ EL AL +LK +GPFIAG+++ Sbjct: 123 LLVELEALENHLKSHDGPFIAGERV 147
>sp|P81124|GSTO_APLCA Probable glutathione transferase (Fragment) OS=Aplysia californica PE=1 SV=1 Length = 92
Score = 70.1 bits (170), Expect = 9e-12 Identities = 32/70 (45%), Positives = 44/70 (62%) Frame = +2
Query: 236 CPFCHRVLLTLEEKGVPYDLKLVDLANKPDWFVEINPEGKVPVVKHEGKWVPDSDVITQI 415 CP+ R L + KG+ DL VDL KPD F ++NP G+VPVV H G V +S + + Sbjct: 3 CPYAQRARLIIAAKGISADLVNVDLNKKPDHFFDLNPYGEVPVVLHNGGHVYESLIAAEY 62
Query: 416 IEERYPEPPL 445 +EE +P+PPL Sbjct: 63 LEEAFPDPPL 72
>sp|Q9Z339|GSTO1_RAT Glutathione S-transferase omega-1 OS=Rattus norvegicus GN=Gsto1 PE=1 SV=2 Length = 241
Score = 64.3 bits (155), Expect = 5e-10 Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 1/71 (1%) Frame = +2
Query: 236 CPFCHRVLLTLEEKGVPYDLKLVDLANKPDWFVEINPEGKVPVVKH-EGKWVPDSDVITQ 412 CPF R L+ L+ KG+ +++ ++L NKP+WF E NP G VPV+++ +G + +S + + Sbjct: 32 CPFAQRTLMVLKAKGIRHEIININLKNKPEWFFEKNPFGLVPVLENTQGHLITESVITCE 91
Query: 413 IIEERYPEPPL 445 ++E YPE L Sbjct: 92 YLDEAYPEKKL 102
>sp|O09131|GSTO1_MOUSE Glutathione S-transferase omega-1 OS=Mus musculus GN=Gsto1 PE=2 SV=2 Length = 240
Score = 64.3 bits (155), Expect = 5e-10 Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 1/71 (1%) Frame = +2
Query: 236 CPFCHRVLLTLEEKGVPYDLKLVDLANKPDWFVEINPEGKVPVVKH-EGKWVPDSDVITQ 412 CPF R L+ L+ KG+ +++ ++L NKP+WF E NP G VPV+++ +G V +S + + Sbjct: 32 CPFAQRTLMVLKAKGIRHEVININLKNKPEWFFEKNPLGLVPVLENSQGHLVTESVITCE 91
Query: 413 IIEERYPEPPL 445 ++E YPE L Sbjct: 92 YLDEAYPEKKL 102
>sp|Q9N1F5|GSTO1_PIG Glutathione S-transferase omega-1 OS=Sus scrofa GN=GSTO1 PE=1 SV=2 Length = 241
Score = 61.2 bits (147), Expect = 4e-09 Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 1/67 (1%) Frame = +2
Query: 236 CPFCHRVLLTLEEKGVPYDLKLVDLANKPDWFVEINPEGKVPVVKH-EGKWVPDSDVITQ 412 CPF R LL L KG+ + + ++L NKP+WF + NP G VPV+++ +G+ + +S + + Sbjct: 32 CPFAQRTLLVLNAKGIRHQVININLKNKPEWFFQKNPSGLVPVLENSQGQLIYESAITCE 91
Query: 413 IIEERYP 433 ++E YP Sbjct: 92 YLDEAYP 98
>sp|P78417|GSTO1_HUMAN Glutathione S-transferase omega-1 OS=Homo sapiens GN=GSTO1 PE=1 SV=2 Length = 241
Score = 58.5 bits (140), Expect = 3e-08 Identities = 25/67 (37%), Positives = 45/67 (67%), Gaps = 1/67 (1%) Frame = +2
Query: 236 CPFCHRVLLTLEEKGVPYDLKLVDLANKPDWFVEINPEGKVPVVKH-EGKWVPDSDVITQ 412 CPF R L L+ KG+ +++ ++L NKP+WF + NP G VPV+++ +G+ + +S + + Sbjct: 32 CPFAERTRLVLKAKGIRHEVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESAITCE 91
Query: 413 IIEERYP 433 ++E YP Sbjct: 92 YLDEAYP 98
>sp|P45207|SSPA_HAEIN Stringent starvation protein A homolog OS=Haemophilus influenzae GN=sspA PE=3 SV=1 Length = 212
Score = 57.4 bits (137), Expect = 6e-08 Identities = 27/68 (39%), Positives = 42/68 (61%) Frame = +2
Query: 242 FCHRVLLTLEEKGVPYDLKLVDLANKPDWFVEINPEGKVPVVKHEGKWVPDSDVITQIIE 421 +CH+V + L EKGV Y+ VDL P+ +E+NP G VP + + +S +I + ++ Sbjct: 21 YCHQVKIVLAEKGVLYENAEVDLQALPEDLMELNPYGTVPTLVDRDLVLFNSRIIMEYLD 80
Query: 422 ERYPEPPL 445 ER+P PPL Sbjct: 81 ERFPHPPL 88
>sp|P31784|SSPA_HAESO Stringent starvation protein A homolog OS=Haemophilus somnus GN=sspA PE=3 SV=1 Length = 212
Score = 55.1 bits (131), Expect = 3e-07 Identities = 24/68 (35%), Positives = 42/68 (61%) Frame = +2
Query: 242 FCHRVLLTLEEKGVPYDLKLVDLANKPDWFVEINPEGKVPVVKHEGKWVPDSDVITQIIE 421 +CH+V + L EKGV Y ++VD + + +E+NP G +P + + +S +I + ++ Sbjct: 21 YCHQVRIVLAEKGVAYATEIVDSESISEDLMELNPYGTIPTLVDRDLVLFNSRIIMEYLD 80
Query: 422 ERYPEPPL 445 ER+P PPL Sbjct: 81 ERFPHPPL 88
>sp|P30347|LIGF_PSEPA Protein ligF OS=Pseudomonas paucimobilis GN=ligF PE=3 SV=1 Length = 257
Score = 54.7 bits (130), Expect = 4e-07 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 3/63 (4%) Frame = +2
Query: 257 LLTLEEKGVPYDLKLVD---LANKPDWFVEINPEGKVPVVKHEGKWVPDSDVITQIIEER 427 L TL EKG+ ++ VD DWF +INP G+VP + H+GK V +S VI + +E+ Sbjct: 18 LATLYEKGLEFEQVFVDPSKFEQHSDWFKKINPRGQVPALWHDGKVVTESTVICEYLEDV 77
Query: 428 YPE 436 +PE Sbjct: 78 FPE 80
>sp|P46421|GSTXA_ARATH Glutathione S-transferase 103-1A OS=Arabidopsis thaliana GN=103-1A PE=2 SV=1 Length = 224
Score = 54.3 bits (129), Expect = 5e-07 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Frame = +2
Query: 239 PFCHRVLLTLEEKGVPYDLKLVDLANKPDWFVEINP-EGKVPVVKHEGKWVPDSDVITQI 415 PF RV + L+ KG+PY+ L NK + +NP KVPV+ H GK + +S VI + Sbjct: 16 PFSRRVEMALKLKGIPYEYVEEILENKSPLLLALNPIHKKVPVLVHNGKTILESHVILEY 75
Query: 416 IEERYPEPPL 445 I+E +P+ P+ Sbjct: 76 IDETWPQNPI 85
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9LFE6 |
Definition |
tr|Q9LFE6|Q9LFE6_ARATH Valine--tRNA ligase-like protein OS=Arabidopsis thaliana |
Align length |
168 |
Score (bit) |
186.0 |
E-value |
7.0e-46 |
Report |
|