DK956239 |
Clone id |
TST39A01NGRL0025_D14 |
Library |
TST39 |
Length |
588 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_D14. 5' end sequence. |
Accession |
DK956239 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2707Contig1 |
Sequence |
GGATGAGCTTAGTGAAGATGATAAGCTGACTGTCGCTCGTGCAAGGAAGATTCAGAGGTT TTTGAGTCAACCCTTCCACGTTGCGGAGGTCTTTACGGGCTCCCCTGGAAAATATGTTGA CTTGAAAGATTGTATCTCGGGCTTCAAGGGTCTTTTGGAGGGGAAATTTGATGATCTCCC TGAGCAGGCTTTTTACATGGTTGGTAGTATTGAGGAGGTGGTGCAGAAGGCAGAGAAGCT TGCCAAGCTGTGAGAAAGGTTTATGGATACCAACAAGGCTGCTTTTTCTCGTCAAAACGG TCGGGGCCCTCATAAAGAGAGATTGCAGCAGAGCACCCTTTTTATCCATCCTCTTTTTTA GGGAAATAAGCGGGGCCTACCTGCCTCCAGTTTTGATAATGTAGTGCTCTGCACTATGCC TAGGTGGCTTTTAAACTACTTGTGGGGACGACGCTGTCAAAATTGGATTTGAGTAGGTTC AACTTTTGAGGCAGGATAATGATGAAAATACCAGAATTGTAAAGTTTTTTTGATTCAAGC TTTTTTTGTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P37399 |
Definition |
sp|P37399|ATPBM_DAUCA ATP synthase subunit beta, mitochondrial OS=Daucus carota |
Align length |
82 |
Score (bit) |
144.0 |
E-value |
3.0e-34 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956239|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0025_D14, 5' (556 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P37399|ATPBM_DAUCA ATP synthase subunit beta, mitochondrial O... 144 3e-34 sp|P43395|ATPBM_ACTDE ATP synthase subunit beta, mitochondrial (... 144 4e-34 sp|Q01859|ATPBM_ORYSJ ATP synthase subunit beta, mitochondrial O... 142 1e-33 sp|P19023|ATPBM_MAIZE ATP synthase subunit beta, mitochondrial O... 141 2e-33 sp|P38482|ATPBM_CHLRE ATP synthase subunit beta, mitochondrial O... 140 3e-33 sp|Q9C5A9|ATPBO_ARATH ATP synthase subunit beta-3, mitochondrial... 140 5e-33 sp|P83484|ATPBN_ARATH ATP synthase subunit beta-2, mitochondrial... 140 5e-33 sp|P29685|ATPBM_HEVBR ATP synthase subunit beta, mitochondrial O... 140 5e-33 sp|P83483|ATPBM_ARATH ATP synthase subunit beta-1, mitochondrial... 140 5e-33 sp|P17614|ATPBM_NICPL ATP synthase subunit beta, mitochondrial O... 139 1e-32 sp|Q15MU4|ATPB2_PSEA6 ATP synthase subunit beta 2 OS=Pseudoalter... 138 2e-32 sp|A8HS10|ATPB_AZOC5 ATP synthase subunit beta OS=Azorhizobium c... 137 4e-32 sp|A7HIX7|ATPB_ANADF ATP synthase subunit beta OS=Anaeromyxobact... 136 8e-32 sp|Q3YVN6|ATPB_SHISS ATP synthase subunit beta OS=Shigella sonne... 135 1e-31 sp|P0ABB7|ATPB_SHIFL ATP synthase subunit beta OS=Shigella flexn... 135 1e-31 sp|Q0SYU4|ATPB_SHIF8 ATP synthase subunit beta OS=Shigella flexn... 135 1e-31 sp|Q329S1|ATPB_SHIDS ATP synthase subunit beta OS=Shigella dysen... 135 1e-31 sp|Q31UN2|ATPB_SHIBS ATP synthase subunit beta OS=Shigella boydi... 135 1e-31 sp|Q1R4K2|ATPB_ECOUT ATP synthase subunit beta OS=Escherichia co... 135 1e-31 sp|P0ABB4|ATPB_ECOLI ATP synthase subunit beta OS=Escherichia co... 135 1e-31 sp|B1IX06|ATPB_ECOLC ATP synthase subunit beta OS=Escherichia co... 135 1e-31 sp|P0ABB5|ATPB_ECOL6 ATP synthase subunit beta OS=Escherichia co... 135 1e-31 sp|Q0TAX7|ATPB_ECOL5 ATP synthase subunit beta OS=Escherichia co... 135 1e-31 sp|A1AHR4|ATPB_ECOK1 ATP synthase subunit beta OS=Escherichia co... 135 1e-31 sp|A8A6J5|ATPB_ECOHS ATP synthase subunit beta OS=Escherichia co... 135 1e-31 sp|P0ABB6|ATPB_ECO57 ATP synthase subunit beta OS=Escherichia co... 135 1e-31 sp|A7ZTU4|ATPB_ECO24 ATP synthase subunit beta OS=Escherichia co... 135 1e-31 sp|Q89X74|ATPB_BRAJA ATP synthase subunit beta OS=Bradyrhizobium... 135 1e-31 sp|A1SBU0|ATPB_SHEAM ATP synthase subunit beta OS=Shewanella ama... 135 2e-31 sp|A0KQX8|ATPB_AERHH ATP synthase subunit beta OS=Aeromonas hydr... 135 2e-31
>sp|P37399|ATPBM_DAUCA ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1 Length = 547
Score = 144 bits (363), Expect = 3e-34 Identities = 65/82 (79%), Positives = 79/82 (96%) Frame = +2
Query: 2 DELSEDDKLTVARARKIQRFLSQPFHVAEVFTGSPGKYVDLKDCISGFKGLLEGKFDDLP 181 DELSEDDKLTVARARKIQRFLSQPFHVAE+FTG+PGKYV+LK+C++ F+G+L+GK+DDLP Sbjct: 462 DELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVELKECVTSFQGVLDGKYDDLP 521
Query: 182 EQAFYMVGSIEEVVQKAEKLAK 247 EQ+FYM+G IEEV+ KAEK+AK Sbjct: 522 EQSFYMLGGIEEVIAKAEKMAK 543
>sp|P43395|ATPBM_ACTDE ATP synthase subunit beta, mitochondrial (Fragment) OS=Actinidia deliciosa GN=ATPB PE=2 SV=1 Length = 173
Score = 144 bits (362), Expect = 4e-34 Identities = 68/82 (82%), Positives = 78/82 (95%) Frame = +2
Query: 2 DELSEDDKLTVARARKIQRFLSQPFHVAEVFTGSPGKYVDLKDCISGFKGLLEGKFDDLP 181 DELSEDDKLTVARARKIQRFLSQPFHVAEVFTG+PGKYVDLK+ I+ F+G+L+GKFDDLP Sbjct: 88 DELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKESITSFQGVLDGKFDDLP 147
Query: 182 EQAFYMVGSIEEVVQKAEKLAK 247 EQ+FYMVG IEEV+ KAEK++K Sbjct: 148 EQSFYMVGGIEEVIAKAEKISK 169
>sp|Q01859|ATPBM_ORYSJ ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2 Length = 552
Score = 142 bits (357), Expect = 1e-33 Identities = 66/82 (80%), Positives = 78/82 (95%) Frame = +2
Query: 2 DELSEDDKLTVARARKIQRFLSQPFHVAEVFTGSPGKYVDLKDCISGFKGLLEGKFDDLP 181 DELSEDDKLTVARARKIQRFLSQPFHVAEVFTG+PGKYV+LK+ ++ F+G+L+GK+DDLP Sbjct: 467 DELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESVNSFQGVLDGKYDDLP 526
Query: 182 EQAFYMVGSIEEVVQKAEKLAK 247 EQ+FYMVG IEEV+ KAEK+AK Sbjct: 527 EQSFYMVGGIEEVIAKAEKIAK 548
>sp|P19023|ATPBM_MAIZE ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1 Length = 553
Score = 141 bits (356), Expect = 2e-33 Identities = 66/82 (80%), Positives = 77/82 (93%) Frame = +2
Query: 2 DELSEDDKLTVARARKIQRFLSQPFHVAEVFTGSPGKYVDLKDCISGFKGLLEGKFDDLP 181 DELSEDDKLTVARARKIQRFLSQPFHVAEVFTG+PGKYV+LK+ + F+G+L+GK+DDLP Sbjct: 468 DELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESVKSFQGVLDGKYDDLP 527
Query: 182 EQAFYMVGSIEEVVQKAEKLAK 247 EQ+FYMVG IEEV+ KAEK+AK Sbjct: 528 EQSFYMVGGIEEVIAKAEKIAK 549
>sp|P38482|ATPBM_CHLRE ATP synthase subunit beta, mitochondrial OS=Chlamydomonas reinhardtii GN=ATP2 PE=1 SV=1 Length = 574
Score = 140 bits (354), Expect = 3e-33 Identities = 72/98 (73%), Positives = 81/98 (82%) Frame = +2
Query: 2 DELSEDDKLTVARARKIQRFLSQPFHVAEVFTGSPGKYVDLKDCISGFKGLLEGKFDDLP 181 DELSE+DKLTVARARKIQRFLSQPF VAEVFTG+PGKYVDLKD IS F G+L+GK+DDLP Sbjct: 423 DELSEEDKLTVARARKIQRFLSQPFQVAEVFTGTPGKYVDLKDTISAFTGILQGKYDDLP 482
Query: 182 EQAFYMVGSIEEVVQKAEKLAKL*ERFMDTNKAAFSRQ 295 E AFYMVG I EVV+KA+KLAK D +K A S + Sbjct: 483 EMAFYMVGGIHEVVEKADKLAKDVAARKDESKKAKSSE 520
>sp|Q9C5A9|ATPBO_ARATH ATP synthase subunit beta-3, mitochondrial OS=Arabidopsis thaliana GN=At5g08680 PE=2 SV=1 Length = 559
Score = 140 bits (352), Expect = 5e-33 Identities = 67/82 (81%), Positives = 77/82 (93%) Frame = +2
Query: 2 DELSEDDKLTVARARKIQRFLSQPFHVAEVFTGSPGKYVDLKDCISGFKGLLEGKFDDLP 181 DELSEDDKLTVARARKIQRFLSQPFHVAE+FTG+PGKYVDLK+ I+ F+GLL+GK+DDL Sbjct: 474 DELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLS 533
Query: 182 EQAFYMVGSIEEVVQKAEKLAK 247 EQ+FYMVG I+EVV KAEK+AK Sbjct: 534 EQSFYMVGGIDEVVAKAEKIAK 555
>sp|P83484|ATPBN_ARATH ATP synthase subunit beta-2, mitochondrial OS=Arabidopsis thaliana GN=At5g08690 PE=1 SV=1 Length = 556
Score = 140 bits (352), Expect = 5e-33 Identities = 67/82 (81%), Positives = 77/82 (93%) Frame = +2
Query: 2 DELSEDDKLTVARARKIQRFLSQPFHVAEVFTGSPGKYVDLKDCISGFKGLLEGKFDDLP 181 DELSEDDKLTVARARKIQRFLSQPFHVAE+FTG+PGKYVDLK+ I+ F+GLL+GK+DDL Sbjct: 471 DELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLS 530
Query: 182 EQAFYMVGSIEEVVQKAEKLAK 247 EQ+FYMVG I+EVV KAEK+AK Sbjct: 531 EQSFYMVGGIDEVVAKAEKIAK 552
>sp|P29685|ATPBM_HEVBR ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1 Length = 562
Score = 140 bits (352), Expect = 5e-33 Identities = 65/82 (79%), Positives = 78/82 (95%) Frame = +2
Query: 2 DELSEDDKLTVARARKIQRFLSQPFHVAEVFTGSPGKYVDLKDCISGFKGLLEGKFDDLP 181 DELSEDDKLTVARARKIQRFLSQPFHVAEVFTG+PGKYV+LK+ I+ F+G+L+GK+DDLP Sbjct: 477 DELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESITSFQGVLDGKYDDLP 536
Query: 182 EQAFYMVGSIEEVVQKAEKLAK 247 EQ+FYMVG I+EV+ KA+K+AK Sbjct: 537 EQSFYMVGGIDEVIAKADKIAK 558
>sp|P83483|ATPBM_ARATH ATP synthase subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08670 PE=1 SV=1 Length = 556
Score = 140 bits (352), Expect = 5e-33 Identities = 67/82 (81%), Positives = 77/82 (93%) Frame = +2
Query: 2 DELSEDDKLTVARARKIQRFLSQPFHVAEVFTGSPGKYVDLKDCISGFKGLLEGKFDDLP 181 DELSEDDKLTVARARKIQRFLSQPFHVAE+FTG+PGKYVDLK+ I+ F+GLL+GK+DDL Sbjct: 471 DELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLS 530
Query: 182 EQAFYMVGSIEEVVQKAEKLAK 247 EQ+FYMVG I+EVV KAEK+AK Sbjct: 531 EQSFYMVGGIDEVVAKAEKIAK 552
>sp|P17614|ATPBM_NICPL ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1 Length = 560
Score = 139 bits (349), Expect = 1e-32 Identities = 65/82 (79%), Positives = 77/82 (93%) Frame = +2
Query: 2 DELSEDDKLTVARARKIQRFLSQPFHVAEVFTGSPGKYVDLKDCISGFKGLLEGKFDDLP 181 DELSEDDK+TVARARKIQRFLSQPFHVAEVFTG+PGKYVDLK+ I+ F+G+L+GK+DDL Sbjct: 475 DELSEDDKMTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKESINSFQGVLDGKYDDLS 534
Query: 182 EQAFYMVGSIEEVVQKAEKLAK 247 EQ+FYMVG I+EV+ KAEK+AK Sbjct: 535 EQSFYMVGGIDEVIAKAEKIAK 556
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9T281 |
Definition |
tr|A9T281|A9T281_PHYPA ATP synthase subunit beta OS=Physcomitrella patens subsp. patens |
Align length |
82 |
Score (bit) |
151.0 |
E-value |
3.0e-35 |
Report |
|