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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956263
Clone id TST39A01NGRL0025_E14
Library
Length 593
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_E14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGCCAATCTTCTGCGAGACATCTACACCTCTCACAGGTCTCTTTCAGTTGTTCTTTTCAT
TCAGCGTTTTGCAGTTCCAAGTAGTGTCTCAAGCTTGTTCAGCTCCCTACTGCCTGTCGA
TTTTGAACGTAGAGCTAGCCAGGTGTTGAATGGTATGTCATCTCTGAAGAGTCTGGCCAC
CCTAAGGAGTTTATCAGCAAAGTTCTTGCCACGGGAGACGCCATTCTGTTACGTTGCAGC
TAGGCATGCACATGCTGACAAGGGTCCTCGTCCCCCCAAATATTTCGACAACACTCGTCC
CACTAAGTCTTTCAATGACCCGAGTTTATTCTTGGATGATTTACCTGCAAGGAATGATGA
ACCAGTGTGGAAGTTCGACAAGGTGGATAAGCCTAGGTCTAAGCTGAAAAAAGGTGAGAG
ACGGCCTATCAGGTCTTTCAAGCATAGAACAGAGGCATACATGCTCCCATTTACCCTTGA
TGTATTCATTTCCAAGAAGTACATCCACGCAAGCATTATGCATCGCATGTCCAACAAGGT
TGTTGCTGTGGCAAGCACCAATTCTAAAGGACTTGCGATCAGTGCTCAAGTCC
■■Homology search results ■■ -
sp_hit_id Q6QD51
Definition sp|Q6QD51|CCD80_RAT Coiled-coil domain-containing protein 80 OS=Rattus norvegicus
Align length 46
Score (bit) 34.3
E-value 0.48
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956263|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_E14, 5'
         (593 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6QD51|CCD80_RAT Coiled-coil domain-containing protein 80 OS=...    34   0.48 
sp|Q8R2G6|CCD80_MOUSE Coiled-coil domain-containing protein 80 O...    31   4.1  
sp|Q17QI8|RHOV_BOVIN Rho-related GTP-binding protein RhoV OS=Bos...    31   5.3  

>sp|Q6QD51|CCD80_RAT Coiled-coil domain-containing protein 80
           OS=Rattus norvegicus GN=Ccdc80 PE=1 SV=1
          Length = 949

 Score = 34.3 bits (77), Expect = 0.48
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = +2

Query: 284 FDNTRPTKSFNDPSLFLDDLPARNDEPVWKFDKVDKP-RSKLKKGE 418
           +D +RPT S  +  L +D++P++N +   K +K +KP + K KKG+
Sbjct: 509 YDLSRPTTSQGEEELQVDNIPSQNAKESKKHEKPEKPEKEKKKKGK 554


>sp|Q8R2G6|CCD80_MOUSE Coiled-coil domain-containing protein 80
           OS=Mus musculus GN=Ccdc80 PE=1 SV=2
          Length = 949

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +2

Query: 284 FDNTRPTKSFNDPSLFLDDLPARNDEPVWKFDKVDKPRSKLKK 412
           +D ++PT S  +    +D +P++N +   K +K++KP  + KK
Sbjct: 509 YDLSQPTSSQGEEERQVDSVPSQNAKESKKLEKLEKPEKEKKK 551


>sp|Q17QI8|RHOV_BOVIN Rho-related GTP-binding protein RhoV OS=Bos
           taurus GN=Rhov PE=2 SV=1
          Length = 236

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +3

Query: 393 LGLS*KKVRDGLSGLSSIEQRHTCSHLPLMY--SFPRSTSTQALCIACPTRLLLWQAPIL 566
           LG+    V DG  G SS+   +TC+  P  Y  +   + S Q L    P R+ LW     
Sbjct: 30  LGIKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQ 89

Query: 567 KDL 575
           +DL
Sbjct: 90  EDL 92
tr_hit_id A9SVY5
Definition tr|A9SVY5|A9SVY5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 72
Score (bit) 70.9
E-value 5.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956263|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_E14, 5'
         (593 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SVY5|A9SVY5_PHYPA Predicted protein OS=Physcomitrella paten...    71   5e-11
tr|B6TUI1|B6TUI1_MAIZE Structural constituent of ribosome OS=Zea...    69   3e-10
tr|A9TM44|A9TM44_PHYPA Predicted protein (Fragment) OS=Physcomit...    68   3e-10
tr|A9NZ46|A9NZ46_PICSI Putative uncharacterized protein OS=Picea...    68   3e-10
tr|Q6ZGY5|Q6ZGY5_ORYSJ cDNA clone:J023132I06, full insert sequen...    67   6e-10
tr|A2X8G7|A2X8G7_ORYSI Putative uncharacterized protein OS=Oryza...    67   6e-10
tr|A7QDQ1|A7QDQ1_VITVI Chromosome chr15 scaffold_82, whole genom...    67   8e-10
tr|A7QX13|A7QX13_VITVI Chromosome chr14 scaffold_211, whole geno...    65   4e-09
tr|Q9LJX6|Q9LJX6_ARATH Genomic DNA, chromosome 3, P1 clone:MAL21...    64   6e-09
tr|Q8SB98|Q8SB98_ORYSA Putative uncharacterized protein OSJNBa00...    63   1e-08
tr|Q8GW22|Q8GW22_ARATH Putative uncharacterized protein (At1g088...    63   1e-08
tr|Q7XC72|Q7XC72_ORYSJ Os10g0559900 protein OS=Oryza sativa subs...    63   1e-08
tr|A2ZA70|A2ZA70_ORYSI Putative uncharacterized protein OS=Oryza...    63   1e-08
tr|B4FUY5|B4FUY5_MAIZE Putative uncharacterized protein OS=Zea m...    61   4e-08
tr|B8LMX3|B8LMX3_PICSI Putative uncharacterized protein OS=Picea...    53   1e-05
tr|Q9LJA1|Q9LJA1_ARATH Arabidopsis thaliana genomic DNA, chromos...    50   7e-05
tr|A7NWN3|A7NWN3_VITVI Chromosome chr5 scaffold_2, whole genome ...    48   5e-04
tr|Q8W357|Q8W357_ORYSA Putative uncharacterized protein OSJNBa00...    42   0.020
tr|Q8LNU7|Q8LNU7_ORYSJ Putative uncharacterized protein OSJNBa00...    42   0.020
tr|Q337J7|Q337J7_ORYSJ Os10g0484400 protein OS=Oryza sativa subs...    42   0.020
tr|B8BHJ8|B8BHJ8_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.020
tr|B6TPY3|B6TPY3_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.034
tr|Q8XZJ4|Q8XZJ4_RALSO Putative uncharacterized protein OS=Ralst...    39   0.22 
tr|A7CJR2|A7CJR2_BURPI RNA-binding S4 domain protein OS=Ralstoni...    39   0.22 
tr|B5SLF1|B5SLF1_RALSO Putative uncharacterized protein OS=Ralst...    37   0.65 
tr|A3RXR9|A3RXR9_RALSO Ribosomal large subunit pseudouridine syn...    37   0.65 
tr|B2UB03|B2UB03_RALPJ RNA-binding S4 domain protein OS=Ralstoni...    37   0.85 
tr|B4GWQ5|B4GWQ5_DROPE GL16390 OS=Drosophila persimilis GN=GL163...    35   4.2  
tr|B7RNC7|B7RNC7_9RHOB ATP-dependent rna helicase, dead/deah box...    34   5.5  
tr|Q5HWR1|Q5HWR1_CAMJR Prophage MuSo1, F protein, putative OS=Ca...    34   7.2  

>tr|A9SVY5|A9SVY5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_216270 PE=4 SV=1
          Length = 196

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 35/72 (48%), Positives = 50/72 (69%)
 Frame = +2

Query: 368 WKFDKVDKPRSKLKKGERRPIRSFKHRTEAYMLPFTLDVFISKKYIHASIMHRMSNKVVA 547
           W  +     RSK + G+ +  +S+K RTE Y  PF LDVFIS KY+HA +MHR+++ VV+
Sbjct: 69  WIVEAAWTRRSKGQPGKNK--KSWKQRTEKYFKPFILDVFISSKYVHAKVMHRVTSSVVS 126

Query: 548 VASTNSKGLAIS 583
           VA+TN+K L +S
Sbjct: 127 VATTNAKDLRLS 138


>tr|B6TUI1|B6TUI1_MAIZE Structural constituent of ribosome OS=Zea
           mays PE=2 SV=1
          Length = 189

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 32/59 (54%), Positives = 47/59 (79%), Gaps = 1/59 (1%)
 Frame = +2

Query: 410 KGERRPIR-SFKHRTEAYMLPFTLDVFISKKYIHASIMHRMSNKVVAVASTNSKGLAIS 583
           + E+RP R S+K RT+ YM PF L+VF SK+++HA +MHR ++KV+AVA+TNSK L ++
Sbjct: 73  EAEQRPNRKSWKQRTDMYMRPFLLNVFFSKRFVHAKVMHRGTSKVIAVATTNSKDLRLT 131


>tr|A9TM44|A9TM44_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_48641 PE=4 SV=1
          Length = 118

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 33/56 (58%), Positives = 45/56 (80%)
 Frame = +2

Query: 401 KLKKGERRPIRSFKHRTEAYMLPFTLDVFISKKYIHASIMHRMSNKVVAVASTNSK 568
           K +K ++   +SFK RTE  + PF+LDVF+S KYIHAS+MHR+++KVVAV STN+K
Sbjct: 1   KEEKKKKTGKKSFKLRTEKCLRPFSLDVFLSGKYIHASVMHRVTSKVVAVCSTNAK 56


>tr|A9NZ46|A9NZ46_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 186

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
 Frame = +2

Query: 377 DKVDKPRSKLK-KGERRPIR--SFKHRTEAYMLPFTLDVFISKKYIHASIMHRMSNKVVA 547
           D   KP + +K K  + P +  SFK RT AYM PFTLDVFISK+++ ASI HR+++K VA
Sbjct: 53  DDNSKPYTYMKEKKSKNPHKHVSFKQRTIAYMQPFTLDVFISKRFVSASITHRVTSKQVA 112

Query: 548 VASTNSKGL 574
           VA TNSK +
Sbjct: 113 VAGTNSKDI 121


>tr|Q6ZGY5|Q6ZGY5_ORYSJ cDNA clone:J023132I06, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OJ1743_B12.26 PE=2
           SV=1
          Length = 181

 Score = 67.4 bits (163), Expect = 6e-10
 Identities = 32/61 (52%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
 Frame = +2

Query: 395 RSKLKKGERRPIR-SFKHRTEAYMLPFTLDVFISKKYIHASIMHRMSNKVVAVASTNSKG 571
           R   K+ E RP R S+K RT+ YM PF L+VF SK+++HA ++HR ++KV++VASTN+K 
Sbjct: 60  RRSRKEAEERPNRKSWKQRTDMYMRPFLLNVFFSKRFVHAKVVHRGTSKVISVASTNAKD 119

Query: 572 L 574
           L
Sbjct: 120 L 120


>tr|A2X8G7|A2X8G7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08528 PE=4 SV=1
          Length = 181

 Score = 67.4 bits (163), Expect = 6e-10
 Identities = 32/61 (52%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
 Frame = +2

Query: 395 RSKLKKGERRPIR-SFKHRTEAYMLPFTLDVFISKKYIHASIMHRMSNKVVAVASTNSKG 571
           R   K+ E RP R S+K RT+ YM PF L+VF SK+++HA ++HR ++KV++VASTN+K 
Sbjct: 60  RRSRKEAEERPNRKSWKQRTDMYMRPFLLNVFFSKRFVHAKVVHRGTSKVISVASTNAKD 119

Query: 572 L 574
           L
Sbjct: 120 L 120


>tr|A7QDQ1|A7QDQ1_VITVI Chromosome chr15 scaffold_82, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036689001
           PE=4 SV=1
          Length = 183

 Score = 67.0 bits (162), Expect = 8e-10
 Identities = 30/60 (50%), Positives = 46/60 (76%)
 Frame = +2

Query: 395 RSKLKKGERRPIRSFKHRTEAYMLPFTLDVFISKKYIHASIMHRMSNKVVAVASTNSKGL 574
           RS+ +  +R   +S+K +T+ YM PF L+VF SK++IHA +MHR ++KV++VA+TNSK L
Sbjct: 63  RSRSEAAKRPSRKSWKQKTDMYMRPFLLNVFFSKRFIHAKVMHRPTSKVISVATTNSKDL 122


>tr|A7QX13|A7QX13_VITVI Chromosome chr14 scaffold_211, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00008905001
           PE=4 SV=1
          Length = 212

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 46/118 (38%), Positives = 59/118 (50%)
 Frame = +2

Query: 221 PFCYVAARHAHADKGPRPPKYFDNTRPTKSFNDPSLFLDDLPARNDEPVWKFDKVDKPRS 400
           P  YV     H  K    P+ F              FLDD    N  P + + K  K ++
Sbjct: 49  PCLYVPTSGFHNGKAHLAPRSFFGVED---------FLDD---DNSRP-YTYQKEKKSKN 95

Query: 401 KLKKGERRPIRSFKHRTEAYMLPFTLDVFISKKYIHASIMHRMSNKVVAVASTNSKGL 574
             K        SFK RT AYM PFTLDV ISK+++ AS+ HR+++K VAVA TNSK +
Sbjct: 96  PNKH------ISFKQRTGAYMEPFTLDVLISKRFVSASLTHRVTSKQVAVAGTNSKDI 147


>tr|Q9LJX6|Q9LJX6_ARATH Genomic DNA, chromosome 3, P1 clone:MAL21
           (Putative uncharacterized protein At3g20230) (Putative
           uncharacterized protein) OS=Arabidopsis thaliana
           GN=At3g20230 PE=2 SV=1
          Length = 187

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 28/60 (46%), Positives = 46/60 (76%)
 Frame = +2

Query: 395 RSKLKKGERRPIRSFKHRTEAYMLPFTLDVFISKKYIHASIMHRMSNKVVAVASTNSKGL 574
           RS+ +  +R   +S+K RT+ YM PF L+VF S+K+IHA +MHR ++KV++VA+TN++ +
Sbjct: 66  RSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDI 125


>tr|Q8SB98|Q8SB98_ORYSA Putative uncharacterized protein
           OSJNBa0042H09.18 OS=Oryza sativa GN=OSJNBa0042H09.18
           PE=4 SV=1
          Length = 187

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 33/60 (55%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
 Frame = +2

Query: 401 KLKKGERRPIR--SFKHRTEAYMLPFTLDVFISKKYIHASIMHRMSNKVVAVASTNSKGL 574
           K +K  + P +  SFK RT AYM PFTLDVFISK+++ AS+ HR + + VAVA TNSK +
Sbjct: 63  KKEKRSKNPHKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRTTCRQVAVAGTNSKDI 122