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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956274
Clone id TST39A01NGRL0025_F01
Library
Length 612
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_F01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GATTGTATGCACATGAAACTTGGTGAATTTTCAAGTCGATTGACTGAGGACCAACGCTGC
AAGAACACAATGATTCAATGCAATTTGAGGCTTGTCATTTCTGTGGCCAGAAAGTATGAG
GGGAAAGGATTAAACATTGAAGATCTCATTCAGGAAGGAAGTCAGGGGCTAATTCGAGGC
TGTGAAAAATTTGATCCAAAGAAGGGTTGCAAATTTTCAACATATGCACATTGGTGGATT
ATGCAGGCAATAACAAAGGCTCTGGTTCTGAAGTCCCGGCTTCTTCGGTTACCTTCTCAT
GCGTCCGAAACCATGCTAACCATAAGAAGAGCCAAGGATAATCTTCAGGCACAATACGGA
CATATGCCTTCTGATATGTTCATATCCAAGTATACAGGAATCAGCATGGAAAGGCTAAGG
GTGTTGTCTAAAACAACCAAGCGTTGCAAGTCTTTGGATAAGCCAGTGGGAAAAGATTTG
AATATGAATTTGGCAGAAATGCTTGCAGATGGCTCATTCAATCCTTACGATTGCAAATAC
TTGCAAAAGTTTTTCAAGGAAGATGTGGATGTGGTGCTTACGACTCTAAAGCCAAGAGAG
CGTGATGTTATG
■■Homology search results ■■ -
sp_hit_id P38023
Definition sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synechococcus elongatus (strain PCC 7942)
Align length 198
Score (bit) 170.0
E-value 6.0e-42
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956274|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_F01, 5'
         (612 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synec...   170   6e-42
sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaen...   166   1e-40
sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor rpoD OS=Synecho...   165   2e-40
sp|P52322|RPOD_MICAE RNA polymerase sigma factor rpoD1 OS=Microc...   164   4e-40
sp|P77994|RPOD_THEMA RNA polymerase sigma factor rpoD OS=Thermot...   149   1e-35
sp|Q59996|RPSC_SYNY3 Probable RNA polymerase sigma-C factor OS=S...   149   1e-35
sp|Q31ME3|RPOD2_SYNE7 RNA polymerase sigma factor rpoD2 OS=Synec...   142   1e-33
sp|P33118|RPSB_CORDI RNA polymerase sigma factor sigB OS=Coryneb...   140   4e-33
sp|Q03066|RPSC_ANASP RNA polymerase sigma-C factor OS=Anabaena s...   139   9e-33
sp|P52328|RPSD2_BACSP RNA polymerase sigma factor rpoD OS=Bacill...   137   4e-32
sp|O66381|RPOD_BACHD RNA polymerase sigma factor rpoD OS=Bacillu...   136   7e-32
sp|Q03065|RPSB_ANASP RNA polymerase sigma-B factor OS=Anabaena s...   135   1e-31
sp|P33656|RPOD_CLOAB RNA polymerase sigma factor rpoD OS=Clostri...   134   3e-31
sp|P52329|RPOD_ENTFA RNA polymerase sigma factor rpoD OS=Enteroc...   134   4e-31
sp|O33662|RPOD_STRMU RNA polymerase sigma factor rpoD OS=Strepto...   134   5e-31
sp|P0A0I9|RPOD_STAAW RNA polymerase sigma factor rpoD OS=Staphyl...   134   5e-31
sp|Q6G905|RPOD_STAAS RNA polymerase sigma factor rpoD OS=Staphyl...   134   5e-31
sp|Q6GGD8|RPOD_STAAR RNA polymerase sigma factor rpoD OS=Staphyl...   134   5e-31
sp|P0A0I8|RPOD_STAAM RNA polymerase sigma factor rpoD OS=Staphyl...   134   5e-31
sp|Q5HFJ9|RPOD_STAAC RNA polymerase sigma factor rpoD OS=Staphyl...   134   5e-31
sp|P0A0J0|RPOD_STAA8 RNA polymerase sigma factor rpoD OS=Staphyl...   134   5e-31
sp|Q8CP24|RPOD_STAES RNA polymerase sigma factor rpoD OS=Staphyl...   133   6e-31
sp|Q5HNY7|RPOD_STAEQ RNA polymerase sigma factor rpoD OS=Staphyl...   133   6e-31
sp|Q99TT5|RPOD_STAAN RNA polymerase sigma factor rpoD OS=Staphyl...   133   6e-31
sp|P17531|RPOD_MYXXA RNA polymerase sigma factor rpoD OS=Myxococ...   133   6e-31
sp|P58290|RPOD_LACLC RNA polymerase sigma factor rpoD (Fragment)...   133   6e-31
sp|P0A4J0|RPOD_STRR6 RNA polymerase sigma factor rpoD OS=Strepto...   133   8e-31
sp|P0A4I9|RPOD_STRPN RNA polymerase sigma factor rpoD OS=Strepto...   133   8e-31
sp|Q04506|RPOD_LACLA RNA polymerase sigma factor rpoD OS=Lactoco...   133   8e-31
sp|P52331|RPOD_LISMO RNA polymerase sigma factor rpoD OS=Listeri...   132   1e-30

>sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1
           OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD1
           PE=3 SV=2
          Length = 399

 Score =  170 bits (430), Expect = 6e-42
 Identities = 88/198 (44%), Positives = 130/198 (65%)
 Frame = +1

Query: 19  LGEFSSRLTEDQRCKNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGCEKFDP 198
           L EF  RL   +R K+ M+Q NLRLV+S+A+KY  +GL+ +DLIQEGS GLIR  EKFD 
Sbjct: 150 LDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDH 209

Query: 199 KKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYGHMPSDM 378
           +KG KFSTYA WWI QAIT+A+  +SR +RLP H  ET+  I++    L  + G  P++ 
Sbjct: 210 EKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEE 269

Query: 379 FISKYTGISMERLRVLSKTTKRCKSLDKPVGKDLNMNLAEMLADGSFNPYDCKYLQKFFK 558
            I+    +++E+LR ++K+ +   SL+ P+GK+ +  L + +      P D +  +   +
Sbjct: 270 EIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPED-EVAKNLLR 328

Query: 559 EDVDVVLTTLKPRERDVM 612
           ED++ VL+TL PRERDV+
Sbjct: 329 EDLEGVLSTLSPRERDVL 346


>sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaena
           sp. (strain PCC 7120) GN=rpoD PE=3 SV=1
          Length = 390

 Score =  166 bits (419), Expect = 1e-40
 Identities = 86/204 (42%), Positives = 131/204 (64%)
 Frame = +1

Query: 1   DCMHMKLGEFSSRLTEDQRCKNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRG 180
           + + + L  F  RL   +R K+ M+Q NLRLV+S+A+KY  +GL+ +DLIQEGS GLIR 
Sbjct: 135 EAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 194

Query: 181 CEKFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYG 360
            EKFD +KG KFSTYA WWI QAIT+A+  +SR +RLP H  ET+  I++    L  + G
Sbjct: 195 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMG 254

Query: 361 HMPSDMFISKYTGISMERLRVLSKTTKRCKSLDKPVGKDLNMNLAEMLADGSFNPYDCKY 540
             P++  I+    +++E+LR ++K+ +   SL+ P+GK+ +  L + +      P D + 
Sbjct: 255 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPED-QV 313

Query: 541 LQKFFKEDVDVVLTTLKPRERDVM 612
            +   +ED++ VL +L PRERDV+
Sbjct: 314 SKNLLREDLEKVLDSLSPRERDVL 337


>sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor rpoD
           OS=Synechocystis sp. (strain PCC 6803) GN=rpoD PE=3 SV=1
          Length = 425

 Score =  165 bits (417), Expect = 2e-40
 Identities = 86/195 (44%), Positives = 128/195 (65%)
 Frame = +1

Query: 28  FSSRLTEDQRCKNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGCEKFDPKKG 207
           F  RL  D+R K+ M+Q NLRLV+S+A+KY  +GL+ +DLIQEGS GLIR  EKFD +KG
Sbjct: 179 FRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKG 238

Query: 208 CKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYGHMPSDMFIS 387
            KFSTYA WWI QAIT+A+  +SR +RLP H  ET+  I++    L  +    P++  I+
Sbjct: 239 YKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIA 298

Query: 388 KYTGISMERLRVLSKTTKRCKSLDKPVGKDLNMNLAEMLADGSFNPYDCKYLQKFFKEDV 567
           +   +++E+LR ++K+ +   SL+ P+GK+ +  L + +      P D +  +   +ED+
Sbjct: 299 EKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPED-EVSKNLLREDL 357

Query: 568 DVVLTTLKPRERDVM 612
           + VL TL PRERDV+
Sbjct: 358 ENVLDTLSPRERDVL 372


>sp|P52322|RPOD_MICAE RNA polymerase sigma factor rpoD1
           OS=Microcystis aeruginosa GN=rpoD1 PE=3 SV=1
          Length = 416

 Score =  164 bits (414), Expect = 4e-40
 Identities = 86/198 (43%), Positives = 126/198 (63%)
 Frame = +1

Query: 19  LGEFSSRLTEDQRCKNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGCEKFDP 198
           L  F  RL   +R K  M+Q NLRLV+S+A+KY  +GL+ +DLIQEGS GLIR  EKFD 
Sbjct: 167 LSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDH 226

Query: 199 KKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYGHMPSDM 378
           +KG KFSTYA WWI QAIT+A+  +SR +RLP H  ET+  I++    L  +    P++ 
Sbjct: 227 EKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEE 286

Query: 379 FISKYTGISMERLRVLSKTTKRCKSLDKPVGKDLNMNLAEMLADGSFNPYDCKYLQKFFK 558
            I+    +++E+LR ++K+ +   SL+ P+GK+ +  L + +      P D +  +   +
Sbjct: 287 EIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPED-EVSKNLLR 345

Query: 559 EDVDVVLTTLKPRERDVM 612
           ED++ VL TL PRERDV+
Sbjct: 346 EDLENVLDTLSPRERDVL 363


>sp|P77994|RPOD_THEMA RNA polymerase sigma factor rpoD OS=Thermotoga
           maritima GN=rpoD PE=1 SV=3
          Length = 399

 Score =  149 bits (376), Expect = 1e-35
 Identities = 73/188 (38%), Positives = 121/188 (64%)
 Frame = +1

Query: 49  DQRCKNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGCEKFDPKKGCKFSTYA 228
           D++ K  +I  NLRLV+S+A++Y G+GL+ +DLIQEG+ GL++  EKFD +KG KFSTYA
Sbjct: 152 DKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYA 211

Query: 229 HWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYGHMPSDMFISKYTGISM 408
            WWI QAIT+A+  ++R +R+P H  ET+  + R +     ++G  PS   ++K  G   
Sbjct: 212 TWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPP 271

Query: 409 ERLRVLSKTTKRCKSLDKPVGKDLNMNLAEMLADGSFNPYDCKYLQKFFKEDVDVVLTTL 588
           E+++ + +  K   SL+ P+G+D + ++ + +AD S      + ++   +E+++ VL TL
Sbjct: 272 EKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTL 331

Query: 589 KPRERDVM 612
            PRE  V+
Sbjct: 332 SPREAMVL 339


>sp|Q59996|RPSC_SYNY3 Probable RNA polymerase sigma-C factor
           OS=Synechocystis sp. (strain PCC 6803) GN=sigC PE=3 SV=1
          Length = 404

 Score =  149 bits (375), Expect = 1e-35
 Identities = 75/184 (40%), Positives = 121/184 (65%)
 Frame = +1

Query: 61  KNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGCEKFDPKKGCKFSTYAHWWI 240
           K  MI+ NLRLV+SVA+KY+ +GL + DLIQEG+ GL R  EKFDP KG +FSTY++WWI
Sbjct: 166 KAHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYSYWWI 225

Query: 241 MQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYGHMPSDMFISKYTGISMERLR 420
            Q IT+A+  +SR++RLP H +E +  I+RA+  +  + GH P    +++  G++ E++R
Sbjct: 226 RQGITRAIATQSRMIRLPVHITEKLNKIKRAQRKISQEKGHTPKIDEVAEELGMTPEQVR 285

Query: 421 VLSKTTKRCKSLDKPVGKDLNMNLAEMLADGSFNPYDCKYLQKFFKEDVDVVLTTLKPRE 600
            +     R  SL+  VG+D +  L ++L   + +P D + +++  + D+  +L  L PRE
Sbjct: 286 EVLTQVPRSVSLELKVGQDKDTELMDLLETDTQSPED-ELMREALQNDMQEILLDLTPRE 344

Query: 601 RDVM 612
           ++V+
Sbjct: 345 QEVI 348


>sp|Q31ME3|RPOD2_SYNE7 RNA polymerase sigma factor rpoD2
           OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD2
           PE=1 SV=1
          Length = 320

 Score =  142 bits (358), Expect = 1e-33
 Identities = 75/201 (37%), Positives = 123/201 (61%), Gaps = 1/201 (0%)
 Frame = +1

Query: 13  MKLGEFSSRLTEDQRCKNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGCEKF 192
           + L +   ++ + QR K  MI+ NLRLV+S+A+KY+ + +   DLIQEG+ GL RG EKF
Sbjct: 70  LNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKF 129

Query: 193 DPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYGHMPS 372
           DP KG KFSTYA+WWI QAIT+A+  +SR +RLP H +E +  +++ +  L  Q G   +
Sbjct: 130 DPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSAT 189

Query: 373 DMFISKYTGISMERLRVLSKTTKRCKSLDKPVGKDLNMNLAEMLADGSFNPYDCKYL-QK 549
              +++   + +E++R   +  ++  SLD  VG   +  L E+L D   +P D  Y+ Q+
Sbjct: 190 ASELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLEDEQSSPSD--YVEQE 247

Query: 550 FFKEDVDVVLTTLKPRERDVM 612
             + D+  ++  L P+++ V+
Sbjct: 248 SLRRDLRNLMAELTPQQQAVI 268


>sp|P33118|RPSB_CORDI RNA polymerase sigma factor sigB
           OS=Corynebacterium diphtheriae GN=sigB PE=3 SV=2
          Length = 329

 Score =  140 bits (354), Expect = 4e-33
 Identities = 72/189 (38%), Positives = 114/189 (60%)
 Frame = +1

Query: 46  EDQRCKNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGCEKFDPKKGCKFSTY 225
           E ++ ++ +++ NLRLV+S+A++Y G+G+ + DLIQEG+ GLIR  EKFD  KG KFSTY
Sbjct: 88  EGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYSKGFKFSTY 147

Query: 226 AHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYGHMPSDMFISKYTGIS 405
           A WWI QAIT+ +  +SR +RLP H  E +  + R K  +  Q G   ++  +++ +GI 
Sbjct: 148 ATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNEELAEESGIE 207

Query: 406 MERLRVLSKTTKRCKSLDKPVGKDLNMNLAEMLADGSFNPYDCKYLQKFFKEDVDVVLTT 585
             ++ +L + ++   SLD PVG D    L + + D      +   +      D+  VL T
Sbjct: 208 ESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRHSDIRTVLDT 267

Query: 586 LKPRERDVM 612
           L+ RE+DV+
Sbjct: 268 LEQREQDVI 276


>sp|Q03066|RPSC_ANASP RNA polymerase sigma-C factor OS=Anabaena sp.
           (strain PCC 7120) GN=sigC PE=3 SV=2
          Length = 416

 Score =  139 bits (351), Expect = 9e-33
 Identities = 75/200 (37%), Positives = 118/200 (59%)
 Frame = +1

Query: 13  MKLGEFSSRLTEDQRCKNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGCEKF 192
           M + E     ++  + K  MI+ NLRLV+SVA+KY+ +GL + DL+QEG+ GL R  EKF
Sbjct: 162 MTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKF 221

Query: 193 DPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYGHMPS 372
           DP KG +FSTYA+WWI Q IT+A+   SR +RLP H +E +  I++A+  +  + G  P+
Sbjct: 222 DPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPT 281

Query: 373 DMFISKYTGISMERLRVLSKTTKRCKSLDKPVGKDLNMNLAEMLADGSFNPYDCKYLQKF 552
              ++    ++  ++R +     R  SL+  VGKD +  L E+L      P +   +++ 
Sbjct: 282 LEDLAIELDMTPTQVREVLLRVPRSVSLETKVGKDKDTELGELLETDGVTPEE-MLMRES 340

Query: 553 FKEDVDVVLTTLKPRERDVM 612
            + D+  +L  L  RERDV+
Sbjct: 341 LQRDLQHLLADLTSRERDVI 360


>sp|P52328|RPSD2_BACSP RNA polymerase sigma factor rpoD OS=Bacillus
           sp. GN=sigA PE=3 SV=1
          Length = 377

 Score =  137 bits (345), Expect = 4e-32
 Identities = 73/189 (38%), Positives = 115/189 (60%), Gaps = 1/189 (0%)
 Frame = +1

Query: 49  DQRCKNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGCEKFDPKKGCKFSTYA 228
           D+  K  + + NLRLV+S+A++Y G+G+   DLIQEG+ GLI+  EKFD  KG KFSTYA
Sbjct: 137 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHNKGFKFSTYA 196

Query: 229 HWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYGHMPSDMFISKYTGISM 408
            WWI QAIT+A+  ++R +R+P H  ET+  + R    L  + G  P+   I+    +S+
Sbjct: 197 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMELSV 256

Query: 409 ERLRVLSKTTKRCKSLDKPVGKDLNMNLAEMLAD-GSFNPYDCKYLQKFFKEDVDVVLTT 585
           E++R + K  +   SL+ P+G++ + +L + + D  +  P D     +  KE ++ VL T
Sbjct: 257 EKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALTPADAA-AYELLKEQLEDVLDT 315

Query: 586 LKPRERDVM 612
           L  RE +V+
Sbjct: 316 LTEREENVL 324
tr_hit_id A9RTR4
Definition tr|A9RTR4|A9RTR4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 200
Score (bit) 188.0
E-value 2.0e-46
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956274|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_F01, 5'
         (612 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RTR4|A9RTR4_PHYPA Predicted protein OS=Physcomitrella paten...   188   2e-46
tr|Q9AYR7|Q9AYR7_PHYPA PpSIG2 OS=Physcomitrella patens GN=Sig2 P...   180   7e-44
tr|A9RXT3|A9RXT3_PHYPA Plastid sigma facor SIG2 OS=Physcomitrell...   180   7e-44
tr|Q7VD88|Q7VD88_PROMA RNA polymerase sigma factor OS=Prochloroc...   174   5e-42
tr|Q9MTH3|Q9MTH3_SINAL Sigma factor 2 OS=Sinapis alba GN=sig2 PE...   173   8e-42
tr|Q710C3|Q710C3_SPIOL Sigma factor OS=Spinacia oleracea GN=sig2...   173   8e-42
tr|A9RTR6|A9RTR6_PHYPA Predicted protein OS=Physcomitrella paten...   172   1e-41
tr|A9BEB7|A9BEB7_PROM4 RNA polymerase sigma factor OS=Prochloroc...   172   2e-41
tr|B5VWQ7|B5VWQ7_SPIMA RNA polymerase, sigma 70 subunit, RpoD fa...   171   2e-41
tr|Q2JS52|Q2JS52_SYNJA RNA polymerase sigma factor OS=Synechococ...   171   3e-41
tr|Q31C37|Q31C37_PROM9 RNA polymerase sigma factor OS=Prochloroc...   171   4e-41
tr|A8G3L2|A8G3L2_PROM2 RNA polymerase sigma factor OS=Prochloroc...   171   4e-41
tr|A2BVF8|A2BVF8_PROM5 RNA polymerase sigma factor OS=Prochloroc...   171   4e-41
tr|A2BPX8|A2BPX8_PROMS RNA polymerase sigma factor OS=Prochloroc...   171   4e-41
tr|B4WPM0|B4WPM0_9SYNE RNA polymerase sigma factor, cyanobacteri...   171   4e-41
tr|Q7V2I0|Q7V2I0_PROMP RNA polymerase sigma factor OS=Prochloroc...   170   5e-41
tr|B0CDC4|B0CDC4_ACAM1 RNA polymerase sigma-70 factor OS=Acaryoc...   170   5e-41
tr|Q5N3Q1|Q5N3Q1_SYNP6 RNA polymerase sigma factor OS=Synechococ...   170   7e-41
tr|A3PBM1|A3PBM1_PROM0 RNA polymerase sigma factor OS=Prochloroc...   170   7e-41
tr|A0YTZ3|A0YTZ3_9CYAN RNA polymerase sigma factor OS=Lyngbya sp...   170   7e-41
tr|Q7NHG5|Q7NHG5_GLOVI RNA polymerase sigma factor OS=Gloeobacte...   169   9e-41
tr|B5ILG7|B5ILG7_9CHRO DNA-directed RNA polymerase sigma subunit...   169   9e-41
tr|Q46GS6|Q46GS6_PROMT RNA polymerase sigma factor OS=Prochloroc...   169   1e-40
tr|A7PSL8|A7PSL8_VITVI Chromosome chr6 scaffold_28, whole genome...   169   1e-40
tr|Q7V698|Q7V698_PROMM RNA polymerase sigma factor OS=Prochloroc...   169   2e-40
tr|Q2JJL6|Q2JJL6_SYNJB RNA polymerase sigma factor OS=Synechococ...   169   2e-40
tr|Q10UV2|Q10UV2_TRIEI RNA polymerase sigma factor OS=Trichodesm...   169   2e-40
tr|A2C7M0|A2C7M0_PROM3 RNA polymerase sigma factor OS=Prochloroc...   169   2e-40
tr|Q05RP2|Q05RP2_9SYNE RNA polymerase sigma factor OS=Synechococ...   169   2e-40
tr|B8HPM3|B8HPM3_9CHRO RNA polymerase, sigma 70 subunit, RpoD su...   169   2e-40

>tr|A9RTR4|A9RTR4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_160930 PE=4 SV=1
          Length = 591

 Score =  188 bits (478), Expect = 2e-46
 Identities = 89/200 (44%), Positives = 135/200 (67%)
 Frame = +1

Query: 13  MKLGEFSSRLTEDQRCKNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGCEKF 192
           M+   F  R+ E +  K+ M+  NLRLV+S+ + Y+G+G+ + DLIQEGS GLIRG EKF
Sbjct: 335 MEQNAFELRVKEGRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSMGLIRGAEKF 394

Query: 193 DPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYGHMPS 372
           DP KG KFSTYAHWWI QA+T+A+  +SR++RLP H  E +  I +AK  L  ++G  P 
Sbjct: 395 DPDKGFKFSTYAHWWIRQAVTRAIADQSRIIRLPIHLYEVISRINKAKKMLIQEHGRQPR 454

Query: 373 DMFISKYTGISMERLRVLSKTTKRCKSLDKPVGKDLNMNLAEMLADGSFNPYDCKYLQKF 552
           D  +++  G+S+E+L+ + K+ K   S+D+ +GK+ + ++ EM+AD      +   +++ 
Sbjct: 455 DEEVAELVGMSVEKLKFIVKSAKTPSSMDRLIGKEKDQSIGEMIADKDVESPEDDLIRQV 514

Query: 553 FKEDVDVVLTTLKPRERDVM 612
            K+DVD VL TL PRER+V+
Sbjct: 515 LKQDVDGVLCTLNPREREVL 534


>tr|Q9AYR7|Q9AYR7_PHYPA PpSIG2 OS=Physcomitrella patens GN=Sig2 PE=2
           SV=1
          Length = 579

 Score =  180 bits (456), Expect = 7e-44
 Identities = 83/200 (41%), Positives = 137/200 (68%)
 Frame = +1

Query: 13  MKLGEFSSRLTEDQRCKNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGCEKF 192
           M+   F +RL + +  K+ M+  NLRLV+S+A+ Y+G+G+ ++DLIQEGS GL+RG EKF
Sbjct: 321 MEQNAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEGSMGLVRGAEKF 380

Query: 193 DPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYGHMPS 372
           DP KG KFSTYAHWWI QA+T+++  +SR +RLP H  E +  I +AK  L  ++G    
Sbjct: 381 DPTKGFKFSTYAHWWIRQAVTRSIADQSRTIRLPIHLYEVISRINKAKRMLVQEHGREAR 440

Query: 373 DMFISKYTGISMERLRVLSKTTKRCKSLDKPVGKDLNMNLAEMLADGSFNPYDCKYLQKF 552
           +  +++  G+++E+L+ + K+ K   S+++P+GKD +  L E++AD   +  +   +++ 
Sbjct: 441 NEEVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDVDSPEDAIVKQL 500

Query: 553 FKEDVDVVLTTLKPRERDVM 612
            ++D++ VL TL PRER+V+
Sbjct: 501 MRQDIEGVLRTLNPREREVL 520


>tr|A9RXT3|A9RXT3_PHYPA Plastid sigma facor SIG2 OS=Physcomitrella
           patens subsp. patens GN=PpSig2 PE=4 SV=1
          Length = 579

 Score =  180 bits (456), Expect = 7e-44
 Identities = 83/200 (41%), Positives = 137/200 (68%)
 Frame = +1

Query: 13  MKLGEFSSRLTEDQRCKNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGCEKF 192
           M+   F +RL + +  K+ M+  NLRLV+S+A+ Y+G+G+ ++DLIQEGS GL+RG EKF
Sbjct: 321 MEQNAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEGSMGLVRGAEKF 380

Query: 193 DPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYGHMPS 372
           DP KG KFSTYAHWWI QA+T+++  +SR +RLP H  E +  I +AK  L  ++G    
Sbjct: 381 DPTKGFKFSTYAHWWIRQAVTRSIADQSRTIRLPIHLYEVISRINKAKRMLVQEHGREAR 440

Query: 373 DMFISKYTGISMERLRVLSKTTKRCKSLDKPVGKDLNMNLAEMLADGSFNPYDCKYLQKF 552
           +  +++  G+++E+L+ + K+ K   S+++P+GKD +  L E++AD   +  +   +++ 
Sbjct: 441 NEEVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDVDSPEDAIVKQL 500

Query: 553 FKEDVDVVLTTLKPRERDVM 612
            ++D++ VL TL PRER+V+
Sbjct: 501 MRQDIEGVLRTLNPREREVL 520


>tr|Q7VD88|Q7VD88_PROMA RNA polymerase sigma factor
           OS=Prochlorococcus marinus GN=rpoD PE=3 SV=1
          Length = 438

 Score =  174 bits (440), Expect = 5e-42
 Identities = 89/202 (44%), Positives = 133/202 (65%)
 Frame = +1

Query: 7   MHMKLGEFSSRLTEDQRCKNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGCE 186
           ++M +  F  RL   +R K  M+Q NLRLV+S+A+KY  +GL+ +DLIQEGS GLIR  E
Sbjct: 185 VNMPMARFRRRLMLARRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 244

Query: 187 KFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYGHM 366
           KFD +KG KFSTYA WWI QAIT+A+  +SR +RLP H  ET+  I++    L  ++G  
Sbjct: 245 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRK 304

Query: 367 PSDMFISKYTGISMERLRVLSKTTKRCKSLDKPVGKDLNMNLAEMLADGSFNPYDCKYLQ 546
           PS+  I++   +++E+LR ++K+ +   SL+ P+GK+ +  L + +   S NP +    +
Sbjct: 305 PSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDSENP-ELDVAK 363

Query: 547 KFFKEDVDVVLTTLKPRERDVM 612
              +ED++ VL TL PRERDV+
Sbjct: 364 TLLREDLEGVLATLSPRERDVL 385


>tr|Q9MTH3|Q9MTH3_SINAL Sigma factor 2 OS=Sinapis alba GN=sig2 PE=2
           SV=1
          Length = 575

 Score =  173 bits (438), Expect = 8e-42
 Identities = 81/192 (42%), Positives = 131/192 (68%)
 Frame = +1

Query: 37  RLTEDQRCKNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGCEKFDPKKGCKF 216
           R+T   +CK+ MI+ N+RLVIS+A+ Y+G G++ +DL+QEG +GL+RG EKFD  KG KF
Sbjct: 325 RITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKF 384

Query: 217 STYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYGHMPSDMFISKYT 396
           STYAHWWI QA+ K+L  +SR++RLP H  E    ++ A+  L ++ G  P +  +++ T
Sbjct: 385 STYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKQPKNEEVAEAT 444

Query: 397 GISMERLRVLSKTTKRCKSLDKPVGKDLNMNLAEMLADGSFNPYDCKYLQKFFKEDVDVV 576
           G+SM+RL  +  + K  +SLD+ +G +LN+  +E++AD      +   +++F ++D+D V
Sbjct: 445 GLSMKRLMAVLLSPKPPRSLDQKIGINLNLKPSEVIADPEAETSEDILMKQFMRQDLDKV 504

Query: 577 LTTLKPRERDVM 612
           L +L  RE+ V+
Sbjct: 505 LDSLSTREKQVI 516


>tr|Q710C3|Q710C3_SPIOL Sigma factor OS=Spinacia oleracea GN=sig2
           PE=2 SV=2
          Length = 575

 Score =  173 bits (438), Expect = 8e-42
 Identities = 82/192 (42%), Positives = 129/192 (67%)
 Frame = +1

Query: 37  RLTEDQRCKNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGCEKFDPKKGCKF 216
           RL     CK+ MI+ N+RLVIS+A+ Y+G G+N++DL+QEG +GL+RG EKFD  KG KF
Sbjct: 330 RLNHGTFCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 389

Query: 217 STYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYGHMPSDMFISKYT 396
           STYAHWWI QA+ K+L  +SR +RLP H  E    ++ A+  L ++ G  P++  +++ T
Sbjct: 390 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGKQPNNEEVAEAT 449

Query: 397 GISMERLRVLSKTTKRCKSLDKPVGKDLNMNLAEMLADGSFNPYDCKYLQKFFKEDVDVV 576
           G+SM+RL  +  T K  +SLD+ +G ++N+  +E++AD      +    ++F ++D++ V
Sbjct: 450 GLSMKRLTAVLMTPKAPRSLDQKIGFNMNLKPSEVIADPEAETAEDLLTKQFMRQDLEKV 509

Query: 577 LTTLKPRERDVM 612
           L TL  RE+ V+
Sbjct: 510 LDTLSSREKQVI 521


>tr|A9RTR6|A9RTR6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_178031 PE=4 SV=1
          Length = 583

 Score =  172 bits (436), Expect = 1e-41
 Identities = 81/192 (42%), Positives = 126/192 (65%)
 Frame = +1

Query: 37  RLTEDQRCKNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGCEKFDPKKGCKF 216
           R+ E +  K+ ++  NLRLV+S+ + Y+G+G+ + DLIQEGS GLIRG EKFDP+ G KF
Sbjct: 336 RVKEGRSAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSLGLIRGAEKFDPEMGYKF 395

Query: 217 STYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYGHMPSDMFISKYT 396
           STYA WWI QA+T+A+  +SR++RLP H  E +  I +AK  +  + G  P D  ++   
Sbjct: 396 STYATWWIRQAVTRAIADQSRIIRLPVHIYEVISRINKAKMTISQELGRQPRDEEVAAMV 455

Query: 397 GISMERLRVLSKTTKRCKSLDKPVGKDLNMNLAEMLADGSFNPYDCKYLQKFFKEDVDVV 576
           G+S+E+L  + K+ +   S+D+P+GKD   +L EM+AD      +   + +  K+D++ V
Sbjct: 456 GMSVEKLLFIVKSARPPTSMDRPIGKDGEQSLGEMVADKGVGSPEDDIMTQVLKQDIEDV 515

Query: 577 LTTLKPRERDVM 612
           L +L P ER+V+
Sbjct: 516 LRSLNPMEREVL 527


>tr|A9BEB7|A9BEB7_PROM4 RNA polymerase sigma factor
           OS=Prochlorococcus marinus (strain MIT 9211)
           GN=P9211_04961 PE=3 SV=1
          Length = 425

 Score =  172 bits (435), Expect = 2e-41
 Identities = 89/202 (44%), Positives = 132/202 (65%)
 Frame = +1

Query: 7   MHMKLGEFSSRLTEDQRCKNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGCE 186
           + M +  F  RL   +R K  M+Q NLRLV+S+A+KY  +GL+ +DLIQEGS GLIR  E
Sbjct: 172 VEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 231

Query: 187 KFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYGHM 366
           KFD +KG KFSTYA WWI QAIT+A+  +SR +RLP H  ET+  I++    L  ++G  
Sbjct: 232 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRK 291

Query: 367 PSDMFISKYTGISMERLRVLSKTTKRCKSLDKPVGKDLNMNLAEMLADGSFNPYDCKYLQ 546
           PS+  I++   +++E+LR ++K+ +   SL+ P+GK+ +  L + +   S NP +    +
Sbjct: 292 PSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDSENP-ELDVAK 350

Query: 547 KFFKEDVDVVLTTLKPRERDVM 612
              +ED++ VL TL PRERDV+
Sbjct: 351 TLLREDLEGVLATLSPRERDVL 372


>tr|B5VWQ7|B5VWQ7_SPIMA RNA polymerase, sigma 70 subunit, RpoD
           family OS=Arthrospira maxima CS-328 GN=AmaxDRAFT_0949
           PE=4 SV=1
          Length = 387

 Score =  171 bits (434), Expect = 2e-41
 Identities = 89/204 (43%), Positives = 133/204 (65%)
 Frame = +1

Query: 1   DCMHMKLGEFSSRLTEDQRCKNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRG 180
           + + M+L EF  RL   +R K+ M+Q NLRLV+S+A+KY  +GL+ +DLIQEGS GLIR 
Sbjct: 132 NAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 191

Query: 181 CEKFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYG 360
            EKFD +KG KFSTYA WWI QAIT+A+  +SR +RLP H  ET+  I++    L  + G
Sbjct: 192 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMG 251

Query: 361 HMPSDMFISKYTGISMERLRVLSKTTKRCKSLDKPVGKDLNMNLAEMLADGSFNPYDCKY 540
             P++  I+    +++E+LR ++K+ +   SL+ P+GK+ +  L + +      P D + 
Sbjct: 252 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPED-QV 310

Query: 541 LQKFFKEDVDVVLTTLKPRERDVM 612
            +   +ED++ VL TL PRERDV+
Sbjct: 311 SKNLLREDLESVLDTLSPRERDVL 334


>tr|Q2JS52|Q2JS52_SYNJA RNA polymerase sigma factor OS=Synechococcus
           sp. (strain JA-3-3Ab) GN=rpoD PE=3 SV=1
          Length = 404

 Score =  171 bits (433), Expect = 3e-41
 Identities = 89/200 (44%), Positives = 129/200 (64%)
 Frame = +1

Query: 13  MKLGEFSSRLTEDQRCKNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGCEKF 192
           M L EF  RL   +R K  M+Q NLRLV+S+A+KY  +GL+ +DLIQEGS GLIR  EKF
Sbjct: 153 MSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 212

Query: 193 DPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNLQAQYGHMPS 372
           D +KG KFSTYA WWI QAIT+A+  +SR +RLP H  ET+  I++    L  + G  P+
Sbjct: 213 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKVTKQLSQELGRRPT 272

Query: 373 DMFISKYTGISMERLRVLSKTTKRCKSLDKPVGKDLNMNLAEMLADGSFNPYDCKYLQKF 552
           +  I+    I++E+LR ++K+ +   SL+ P+GK+ +  L + +      P + +  +  
Sbjct: 273 EEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESEGETPEE-RVAKVL 331

Query: 553 FKEDVDVVLTTLKPRERDVM 612
            +ED++ VL TL PRERDV+
Sbjct: 332 LREDLESVLETLTPRERDVL 351