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NBDC - LSDB Archive
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DK956300
Clone id TST39A01NGRL0025_G03
Library
Length 363
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_G03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAACCACACCGCCCACAATCAGTCTTACAAAGCGCACAAGAATGGAATCAAGAAGGCCAA
GAAGCACAAGTACACTTCAAGGAAGGGGATGGACCGGAAGTTTCTACTGGAACCTGAGAT
ACGCAAAGAAACACAATCGAGTTGGTGGTGCTGATGCAGGATCCGACTCCTGTGCTGAAG
AGTAAATTGGAGTAGTTACCCGCCATATATGTGGCTCTTGTAATGAGCAGAGAGATGGCT
GCCAAGCCTCTCTACCTCCCAATGTCGCTCTGACTGGGGACCTTTTTGATAATTCTTAAT
TTGCATCGTGTTTAAACAAAATTTTTTCCACCCAACATAAAAAAAAAAAAAAAAAAAAAG
AAA
■■Homology search results ■■ -
sp_hit_id P92127
Definition sp|P92127|VS41_GIALA Variant-specific surface protein VSP4A1 OS=Giardia lamblia
Align length 55
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956300|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_G03, 5'
         (338 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P92127|VS41_GIALA Variant-specific surface protein VSP4A1 OS=...    31   1.7  
sp|Q84WM0|RL292_ARATH 60S ribosomal protein L29-2 OS=Arabidopsis...    31   2.2  
sp|Q6GEN2|NPD_STAAR NAD-dependent deacetylase OS=Staphylococcus ...    31   2.2  
sp|P66816|NPD_STAAN NAD-dependent deacetylase OS=Staphylococcus ...    31   2.2  
sp|P66815|NPD_STAAM NAD-dependent deacetylase OS=Staphylococcus ...    31   2.2  
sp|Q9M7X7|RL291_ARATH 60S ribosomal protein L29-1 OS=Arabidopsis...    30   2.9  
sp|Q8NVC8|NPD_STAAW NAD-dependent deacetylase OS=Staphylococcus ...    30   2.9  
sp|Q6G7B7|NPD_STAAS NAD-dependent deacetylase OS=Staphylococcus ...    30   2.9  
sp|P16373|ZFP59_MOUSE Zinc finger protein 59 OS=Mus musculus GN=...    30   3.8  
sp|P25886|RL29_RAT 60S ribosomal protein L29 OS=Rattus norvegicu...    30   3.8  
sp|Q95281|RL29_PIG 60S ribosomal protein L29 OS=Sus scrofa GN=RP...    30   3.8  
sp|P47915|RL29_MOUSE 60S ribosomal protein L29 OS=Mus musculus G...    30   3.8  
sp|Q8HXB8|RL29_MACFA 60S ribosomal protein L29 OS=Macaca fascicu...    30   3.8  
sp|P47914|RL29_HUMAN 60S ribosomal protein L29 OS=Homo sapiens G...    30   3.8  
sp|Q58DW3|RL29_BOVIN 60S ribosomal protein L29 OS=Bos taurus GN=...    30   3.8  
sp|Q9HZ71|RS1_PSEAE 30S ribosomal protein S1 OS=Pseudomonas aeru...    30   4.9  
sp|Q5HE07|NPD_STAAC NAD-dependent deacetylase OS=Staphylococcus ...    30   4.9  
sp|Q53700|NPD_STAA8 NAD-dependent deacetylase OS=Staphylococcus ...    30   4.9  
sp|Q7SZC5|NDC1_DANRE Nucleoporin NDC1 OS=Danio rerio GN=tmem48 P...    30   4.9  
sp|Q9ZBH0|Y6443_STRCO Putative S-adenosyl-L-methionine-dependent...    29   6.4  

>sp|P92127|VS41_GIALA Variant-specific surface protein VSP4A1
           OS=Giardia lamblia PE=1 SV=1
          Length = 687

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = -1

Query: 170 GVGSCISTTNSIVFLCVSQVPVETSGPSPSLKCTCASWPS*FHSCALCKTDCGRC 6
           GV +C + T           P  ++GP+   +C   ++      CA C +DC  C
Sbjct: 155 GVANCATCT----------APASSTGPATCTECMAGTYKKSDTECAACHSDCATC 199


>sp|Q84WM0|RL292_ARATH 60S ribosomal protein L29-2 OS=Arabidopsis
           thaliana GN=RPL29B PE=2 SV=2
          Length = 61

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/37 (48%), Positives = 20/37 (54%)
 Frame = +3

Query: 51  RRPRSTSTLQGRGWTGSFYWNLRYAKKHNRVGGADAG 161
           RR R T T   RG    F  N RYA+KHN   G +AG
Sbjct: 25  RRHRHTPT---RGMDPKFLRNQRYARKHNVKSGENAG 58



 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 2   NHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDRKFL 106
           NHTAHNQS               +T  +GMD KFL
Sbjct: 6   NHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFL 40


>sp|Q6GEN2|NPD_STAAR NAD-dependent deacetylase OS=Staphylococcus
           aureus (strain MRSA252) GN=npdA PE=3 SV=1
          Length = 243

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
 Frame = +3

Query: 150 ADAGSDSCAEE*IGVVTRHICGSCNEQR-------------DGCQASLPPNVALTGDLFD 290
           +DAGS    +E  G + R  C +C++               D C  ++ P++ L G++ D
Sbjct: 112 SDAGSQH-VDELHGTLNRFYCNACHKSYMKSDVIDRTLKHCDNCGGAIRPDIVLYGEMLD 170

Query: 291 NS*FASCLNKI 323
                  LNKI
Sbjct: 171 QPTIIRALNKI 181


>sp|P66816|NPD_STAAN NAD-dependent deacetylase OS=Staphylococcus
           aureus (strain N315) GN=npdA PE=3 SV=1
          Length = 243

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
 Frame = +3

Query: 150 ADAGSDSCAEE*IGVVTRHICGSCNEQR-------------DGCQASLPPNVALTGDLFD 290
           +DAGS    +E  G + R  C +C++               D C  ++ P++ L G++ D
Sbjct: 112 SDAGSQH-VDELHGTLNRFYCNACHKSYTKSDVIDRTLKHCDNCGGAIRPDIVLYGEMLD 170

Query: 291 NS*FASCLNKI 323
                  LNKI
Sbjct: 171 QPTIIRALNKI 181


>sp|P66815|NPD_STAAM NAD-dependent deacetylase OS=Staphylococcus
           aureus (strain Mu50 / ATCC 700699) GN=npdA PE=3 SV=1
          Length = 243

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
 Frame = +3

Query: 150 ADAGSDSCAEE*IGVVTRHICGSCNEQR-------------DGCQASLPPNVALTGDLFD 290
           +DAGS    +E  G + R  C +C++               D C  ++ P++ L G++ D
Sbjct: 112 SDAGSQH-VDELHGTLNRFYCNACHKSYTKSDVIDRTLKHCDNCGGAIRPDIVLYGEMLD 170

Query: 291 NS*FASCLNKI 323
                  LNKI
Sbjct: 171 QPTIIRALNKI 181


>sp|Q9M7X7|RL291_ARATH 60S ribosomal protein L29-1 OS=Arabidopsis
           thaliana GN=RPL29A PE=2 SV=1
          Length = 61

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 2   NHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDRKFL 106
           NHTAHNQS               +T  +GMD KFL
Sbjct: 6   NHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFL 40



 Score = 30.0 bits (66), Expect = 3.8
 Identities = 20/44 (45%), Positives = 23/44 (52%)
 Frame = +3

Query: 51  RRPRSTSTLQGRGWTGSFYWNLRYAKKHNRVGGADAGSDSCAEE 182
           RR R T T   RG    F  N RYA+KHN      AG ++ AEE
Sbjct: 25  RRHRHTPT---RGMDPKFLRNQRYARKHN----VKAGENASAEE 61


>sp|Q8NVC8|NPD_STAAW NAD-dependent deacetylase OS=Staphylococcus
           aureus (strain MW2) GN=npdA PE=3 SV=1
          Length = 243

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
 Frame = +3

Query: 150 ADAGSDSCAEE*IGVVTRHICGSCNEQR-------------DGCQASLPPNVALTGDLFD 290
           +DAGS    +E  G + R  C +C++               D C  ++ P++ L G++ D
Sbjct: 112 SDAGSQH-VDELHGTLNRFYCNACHKSYTKSDVIDRTLKHCDNCGGAIRPDIVLYGEMLD 170

Query: 291 NS*FASCLNKI 323
                  LNKI
Sbjct: 171 QPTIIRSLNKI 181


>sp|Q6G7B7|NPD_STAAS NAD-dependent deacetylase OS=Staphylococcus
           aureus (strain MSSA476) GN=npdA PE=3 SV=1
          Length = 243

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
 Frame = +3

Query: 150 ADAGSDSCAEE*IGVVTRHICGSCNEQR-------------DGCQASLPPNVALTGDLFD 290
           +DAGS    +E  G + R  C +C++               D C  ++ P++ L G++ D
Sbjct: 112 SDAGSQH-VDELHGTLNRFYCNACHKSYTKSDVIDRTLKHCDNCGGAIRPDIVLYGEMLD 170

Query: 291 NS*FASCLNKI 323
                  LNKI
Sbjct: 171 QPTIIRSLNKI 181


>sp|P16373|ZFP59_MOUSE Zinc finger protein 59 OS=Mus musculus
           GN=Zfp59 PE=2 SV=2
          Length = 634

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = -1

Query: 206 MAGNYSNLLFSTGVGSCISTTNSIVFLCVSQVP-----VETSGPSPSLK 75
           M   YSNL+    VGSCIS  N IV L   + P      ET  PSP L+
Sbjct: 1   MLETYSNLV--AVVGSCISKPNLIVLLEQEKEPWMAVNEETGRPSPDLE 47


>sp|P25886|RL29_RAT 60S ribosomal protein L29 OS=Rattus norvegicus
           GN=Rpl29 PE=1 SV=3
          Length = 156

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = +2

Query: 2   NHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDRKFLLEPEIRKE 130
           NHT HNQS               Y S KG+D KFL      K+
Sbjct: 6   NHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKK 48



 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 51  RRPRSTSTLQGRGWTGSFYWNLRYAKKHNRVG 146
           ++PRS      +G    F  N+R+AKKHN+ G
Sbjct: 22  KKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53
tr_hit_id A9S9C3
Definition tr|A9S9C3|A9S9C3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 47
Score (bit) 40.0
E-value 0.058
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956300|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_G03, 5'
         (338 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S9C3|A9S9C3_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.058
tr|A9RU27|A9RU27_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.058
tr|A9NK14|A9NK14_PICSI Putative uncharacterized protein OS=Picea...    40   0.076
tr|A9SHM2|A9SHM2_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.100
tr|A5BGX6|A5BGX6_VITVI Putative uncharacterized protein (Chromos...    37   0.50 
tr|Q9FP55|Q9FP55_ORYSJ Os05g0355500 protein OS=Oryza sativa subs...    36   1.1  
tr|B6T5X5|B6T5X5_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    36   1.1  
tr|A2WNY2|A2WNY2_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|Q9FR31|Q9FR31_SOLLC Ripening regulated protein DDTFR19 OS=Sol...    35   1.4  
tr|A9PCN1|A9PCN1_POPTR Putative uncharacterized protein OS=Popul...    35   1.9  
tr|A9P870|A9P870_POPTR Putative uncharacterized protein OS=Popul...    35   1.9  
tr|A5BSZ9|A5BSZ9_VITVI Putative uncharacterized protein (Chromos...    35   1.9  
tr|A8WNC3|A8WNC3_CAEBR Putative uncharacterized protein OS=Caeno...    35   1.9  
tr|B6UC87|B6UC87_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    34   3.2  
tr|B6U0G5|B6U0G5_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    34   3.2  
tr|B6TL28|B6TL28_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    34   3.2  
tr|B6SYX2|B6SYX2_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    34   3.2  
tr|B6SPH4|B6SPH4_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    34   3.2  
tr|B6SP02|B6SP02_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    34   3.2  
tr|B6SKT2|B6SKT2_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    34   3.2  
tr|Q9MAW5|Q9MAW5_PANGI Ribosomal protein L29 OS=Panax ginseng GN...    34   4.2  
tr|A4S4Y4|A4S4Y4_OSTLU Ribosomal protein L29, component of cytos...    34   4.2  
tr|A6GU99|A6GU99_9BURK 30S ribosomal protein S1 OS=Limnobacter s...    33   5.5  
tr|Q23DF1|Q23DF1_TETTH Putative uncharacterized protein OS=Tetra...    33   5.5  
tr|Q23DF0|Q23DF0_TETTH Putative uncharacterized protein OS=Tetra...    33   5.5  
tr|B4D8T4|B4D8T4_9BACT Leucyl-tRNA synthetase OS=Chthoniobacter ...    33   7.2  
tr|B4PW10|B4PW10_DROYA GE14550 OS=Drosophila yakuba GN=GE14550 P...    33   7.2  
tr|A9UNI8|A9UNI8_MONBE Predicted protein OS=Monosiga brevicollis...    33   7.2  
tr|Q1H2E8|Q1H2E8_METFK SSU ribosomal protein S1P OS=Methylobacil...    33   9.3  
tr|B8GRS3|B8GRS3_9GAMM Ribosomal protein S1 OS=Thioalkalivibrio ...    33   9.3  

>tr|A9S9C3|A9S9C3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_109840 PE=4 SV=1
          Length = 63

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 21/47 (44%), Positives = 22/47 (46%)
 Frame = +2

Query: 2   NHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDRKFLLEPEIRKETQSS 142
           NHTAHNQSY              Y SRKGMD KFL      K+   S
Sbjct: 6   NHTAHNQSYKNHKNGIKKVKKHKYASRKGMDPKFLRNQRYAKKHNRS 52


>tr|A9RU27|A9RU27_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_205600 PE=4 SV=1
          Length = 63

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 21/47 (44%), Positives = 22/47 (46%)
 Frame = +2

Query: 2   NHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDRKFLLEPEIRKETQSS 142
           NHTAHNQSY              Y SRKGMD KFL      K+   S
Sbjct: 6   NHTAHNQSYKNHKNGIKKVKKHKYASRKGMDPKFLRNQRYAKKHNRS 52


>tr|A9NK14|A9NK14_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 65

 Score = 39.7 bits (91), Expect = 0.076
 Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 2   NHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDRKFLLEPE-IRKETQSS 142
           NHTAHNQSY              +TSRKGMD KFL      RK  Q++
Sbjct: 6   NHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYARKHNQAN 53



 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 51  RRPRSTSTLQGRGWTGSFYWNLRYAKKHNRVGGADAGSDS 170
           ++P+       +G    F  N RYA+KHN+  GA +G+ S
Sbjct: 22  KKPKKHRHTSRKGMDPKFLRNQRYARKHNQANGAGSGTGS 61


>tr|A9SHM2|A9SHM2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_106454 PE=4 SV=1
          Length = 63

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 20/43 (46%), Positives = 21/43 (48%)
 Frame = +2

Query: 2   NHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDRKFLLEPEIRKE 130
           NHTAHNQSY              Y SRKGMD KFL      K+
Sbjct: 6   NHTAHNQSYKNHKNGIKKVKKHKYISRKGMDPKFLRNQRYAKK 48


>tr|A5BGX6|A5BGX6_VITVI Putative uncharacterized protein (Chromosome
           chr7 scaffold_42, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00028098001 PE=4 SV=1
          Length = 62

 Score = 37.0 bits (84), Expect = 0.50
 Identities = 18/35 (51%), Positives = 19/35 (54%)
 Frame = +2

Query: 2   NHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDRKFL 106
           NHTAHNQSY              +TS KGMD KFL
Sbjct: 6   NHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFL 40


>tr|Q9FP55|Q9FP55_ORYSJ Os05g0355500 protein OS=Oryza sativa subsp.
           japonica GN=P0475H04.12 PE=4 SV=1
          Length = 60

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 18/35 (51%), Positives = 18/35 (51%)
 Frame = +2

Query: 2   NHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDRKFL 106
           NHTAHNQSY               TS KGMD KFL
Sbjct: 6   NHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFL 40


>tr|B6T5X5|B6T5X5_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=4
           SV=1
          Length = 58

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 18/35 (51%), Positives = 18/35 (51%)
 Frame = +2

Query: 2   NHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDRKFL 106
           NHTAHNQSY               TS KGMD KFL
Sbjct: 6   NHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFL 40


>tr|A2WNY2|A2WNY2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_01562 PE=4 SV=1
          Length = 60

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 18/35 (51%), Positives = 18/35 (51%)
 Frame = +2

Query: 2   NHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDRKFL 106
           NHTAHNQSY               TS KGMD KFL
Sbjct: 6   NHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFL 40


>tr|Q9FR31|Q9FR31_SOLLC Ripening regulated protein DDTFR19
           OS=Solanum lycopersicum GN=DDTFR19 PE=4 SV=1
          Length = 54

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = +2

Query: 2   NHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDRKFL 106
           NHTAHNQSY              ++S KGMD KFL
Sbjct: 6   NHTAHNQSYKAHRNGIKKPRKHRHSSTKGMDPKFL 40


>tr|A9PCN1|A9PCN1_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 61

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = +2

Query: 2   NHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDRKFL 106
           NHTAHNQS+              +TS KGMD KFL
Sbjct: 6   NHTAHNQSHKAHKNGIKKPKRHRHTSTKGMDPKFL 40